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Domain assignment for Solyc03g112340.1.1 from Solanum lycopersicum v2.3

Domain architecture


Domain assignment details

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Strong hits

Sequence:  Solyc03g112340.1.1
Domain Number 1 Region: 118-168
Classification Level Classification E-value
Superfamily RING/U-box 9.84e-22
Family RING finger domain, C3HC4 0.0015
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Solyc03g112340.1.1
Sequence length 398
Comment evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:56820717-56821913 transcript_region:SL2.40ch03:56820717..56821913+ go_terms:GO:0004842 functional_description:"Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "
Sequence
MVNFKALSVNLLLLVLLCPASAQPSNSPDSENRFEYPSVSPAMAIIIVILIAALFFIAFF
SIYIRNRGAVNGSIGQTFSMRRRTAAATRGLEDSVIETFPTFTYVEVKDHHIGKGALECA
VCLNEFEDDEMLRLIPKCDHVFHPECIDAWLKSHVTCPVCRADLTPKPDEPVPVQTPEVN
RELGQEQENTQQNNEVTIQIDVDENLMSQQEETSVKPEVKRNLSFNAVNRPPRSFSLKRP
KMLSKFRSHSTGHSLVVPGENLDRYTLRLPEKVRKDVMDRALLNRTRSCAVTLPRHGSTT
RGYRAGPGEGSNRGARSFKRIDRFDPETKSDRWFLKIAPPFFTRGSSMKSPKVRADNEEA
STSRSNMKVAVKLPSFQCLEPKGDEPGLMANDSARSPV
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Identical sequences K4BK88
XP_004236256.1.44838 Sopim03g112340.0.1 Solyc03g112340.1.1 Solyc03g112340.1.1

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