SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for Solyc07g043610.2.1 from Solanum lycopersicum v2.3

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  Solyc07g043610.2.1
Domain Number 1 Region: 202-282
Classification Level Classification E-value
Superfamily CAD & PB1 domains 0.000000301
Family PB1 domain 0.047
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Solyc07g043610.2.1
Sequence length 342
Comment genomic_reference:SL2.40ch07 gene_region:54882486-54885433 transcript_region:SL2.40ch07:54882486..54885433- go_terms:GO:0046983 functional_description:"Auxin response factor 6 (AHRD V1 ***- C7FFK5_SOLLC); contains Interpro domain(s) IPR011525 Aux/IAA-ARF-dimerisation "
Sequence
MASATQPHLSHLQVLSSTGSLQTFSDILGNHVNASSNSNMQSLLSSFSRDGASAVLNMHE
THPLVSSSSSSKRIALESQLPSRVTPFVVSQPEDVIAHNTKVSDLSSLLPPFPSRESFSD
YRGVDDSQSNALYGFTDFLNILQTGMSNMKGSSGDNGSLSIHYATSTFTSTAGNEYPLNS
DMTASSCVDESGFLQSSENGDQANPTNRIFVKVQKSGSFGRSLDISKFSSYHELRSELAR
MFGLEGLLEDPERSGWQLVIVDRENDVLLLGDDPWQEFVNNVWYIKILSPHEVQQIGKEG
LDLPNGVQAQTLPGNVNGCDDYMNQKGSRNTMNGIPLGSLDY
Download sequence
Identical sequences K4CEL8
Solyc07g043610.2.1 Solyc07g043610.2.1 Sopim07g043610.0.1

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]