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Domain assignment for Solyc09g055190.1.1 from Solanum lycopersicum v2.3

Domain architecture


Domain assignment details

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No Significant Hits.

Weak hits

Sequence:  Solyc09g055190.1.1
Domain Number - Region: 228-255
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.000227
Family Retrovirus zinc finger-like domains 0.0052
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) Solyc09g055190.1.1
Sequence length 304
Comment evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:32557195-32558858 transcript_region:SL2.40ch09:32557195..32558858+ go_terms:GO:0008270 functional_description:"Gag-protease polyprotein (AHRD V1 *-*- Q84KB1_CUCME); contains Interpro domain(s) IPR001878 Zinc finger, CCHC-type "
Sequence
MNTRRNATRRLEEEIYNAGVPPRGDQVPPLKEVVVDDSTLANPPPITLAQIRAIFSQMTQ
AITNQSQATMVQAQSMIAQANRDVAPRVHEQTMASRLGDFTRMNPPILYGSKVDEHLKEF
IDEFYMILCSMGLSTNYNYEFEEVRAKRKDMDSKGARSFDGGATKIGLRFKTSVNTRRGY
RIMFHLNFRNGRDCRVSNSKFQKGGNASSPTRKPTCGKCGKKHCGDSLMGTENCFGCVKS
GHKVKDCPTIKGKEKSAQPSGSSDAPKKNRFYSLRTRGIVTFGNGGNVTAVGKYGIVGNF
GTVG
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Identical sequences K4CT18
Solyc09g055190.1.1 Solyc09g055190.1.1

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