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Domain assignment for Solyc12g099850.1.1 from Solanum lycopersicum v2.3

Domain architecture


Domain assignment details

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No Significant Hits.

Weak hits

Sequence:  Solyc12g099850.1.1
Domain Number - Region: 485-533,601-678,712-759
Classification Level Classification E-value
Superfamily TPR-like 0.00163
Family Tetratricopeptide repeat (TPR) 0.016
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) Solyc12g099850.1.1
Sequence length 796
Comment evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:65165499-65167889 transcript_region:SL2.40ch12:65165499..65167889- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KGE6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "
Sequence
MFHHVRIFRIASSPLLLFTKSLQTLTESSQSYQKDLLNFCSTTKSLLQTQQAHAFSIING
FLPFSISISAALILRYAAFSSDPRIVRTMFYQSLPFSRSAFLYNTLIRAQTILGVVGVLE
VYNGMLRSGVVPDDHTFPFVIKLCTDFGEVRKGLEVHGLLMKLGFDYDVFVNNTLMLFYG
SFGDLVSAGKIFDEMSERDLVSWNSMIRVFTDNRCYFEGIGVFREMVMWSEFKPNVVSVV
SVLPICAVLEDGIMVSEIHCYVIKVGLDCQVAIGNAFVDAYGKCLNVESSRQVFDEMVER
NEVSWNAMIGTFAHNGFNNHALESFRFMIDGGWNVNSTTVSSMLPVLVELGKFNKGREVH
GFCLRTGLECDVFVANALIDMYAKSERSAEASAVFHKMDSRNVVSWNTMVANFAQNGLEF
EAIGLVRKMQSSDETPTSVTLTNVLPACARIGCLRSGKEIHARSIRNGSVIDLFVSNAIT
DMYAKCGCLNLAQNVFDMSLRDEVSYNILIVGYSQTSHCSKSLVLFSEMVPTGMKHDTVS
FVGVLSACATISAIKQGKEIHAFAVRRLFHEHLFVSNSFLDLYTKCGRIDLSQKVFDRIE
NRDVASWNTMILGYGMLGDLHTAIDMFEATREDGVEHDSISYIAVLSACSHGGLVDKGKK
YFNDMLARNIEPSQMHYACMVDLLGRSGLMDEAINVITGLPFEPDFNVWAALLGACRLNG
NVELGSWAAEHLFKMQPHHPGYYALLSNMYAEAGRWGEADSIREMMKLRGVKKNPGCSWI
QIQDKVHAFIVGQKTG
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Identical sequences K4DI06
Sopim12g099850.0.1 Solyc12g099850.1.1 Solyc12g099850.1.1 XP_004252881.2.44838

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