SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from Please contact us if you experience any problems.

Domain assignment for Solyc10g009270.2.1 from Solanum lycopersicum v2.3

Domain architecture

Domain assignment details

show help)
Strong hits

Sequence:  Solyc10g009270.2.1
Domain Number 1 Region: 215-282
Classification Level Classification E-value
Superfamily HLH, helix-loop-helix DNA-binding domain 4.06e-18
Family HLH, helix-loop-helix DNA-binding domain 0.0021
Further Details:      
Weak hits

Sequence:  Solyc10g009270.2.1
Domain Number - Region: 11-138
Classification Level Classification E-value
Superfamily GAF domain-like 0.00696
Family GAF domain 0.017
Further Details:      

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Solyc10g009270.2.1
Sequence length 393
Comment genomic_reference:SL2.40ch10 gene_region:3259314-3261680 transcript_region:SL2.40ch10:3259314..3261680+ go_terms:GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 *-** Q401N4_9LILI); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "
Download sequence
Identical sequences K4CYA3
Sopim10g009270.0.1 XP_004248095.1.44838 Solyc10g009270.2.1 Solyc10g009270.2.1

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]