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Domain assignment for Solyc01g095160.2.1 from Solanum lycopersicum v.2.3

Domain architecture


Domain assignment details

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Strong hits

Sequence:  Solyc01g095160.2.1
Domain Number 1 Region: 260-296,364-546
Classification Level Classification E-value
Superfamily TPR-like 0.0000000043
Family BTAD-like 0.053
Further Details:      
 
Domain Number 2 Region: 151-289
Classification Level Classification E-value
Superfamily TPR-like 0.0000759
Family Tetratricopeptide repeat (TPR) 0.04
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Solyc01g095160.2.1
Sequence length 695
Comment genomic_reference:SL2.40ch01 gene_region:78287834-78290088 transcript_region:SL2.40ch01:78287834..78290088+ go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MB20_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "
Sequence
MRANLRASVKLTSHSFSPHIHSACTIRSSSSFSTAHKEKTFFQPANKDQMITRLCNENKF
NEALQMLCEQRRLKEAIQLLERPETRPSATVFSTLLRICIDNRALEEGKRVHKIMKCSGF
RPGVVISNRVLDFYCKCDKPFDAQNLFVEMPERDLCSWNIMVSGFAKLGLIDEARKLFDE
MPEKDNFSWTAMISGYVRHNKPECALELYRVMLRDENFKCNKFTISSALAASASIQSLRL
GKEIYGHIVRTGLDSDAVVWSALSDMYGKCGSVDEARHIFDRTKDKDVVSWTAMIDRYFG
DGRWEEGYLLFSCLMYSGIRPNDFTFAGVLNACAHQTKEHFGKQVHGYMMRIGFDPLSFA
ASTLVHMYAKCGSVDSAYKVFKRLPKPDVVSWTSLINGYAQNSQPSEALQLYDSLLKSGT
QPDHITFVGVLSACTHAGLVDKGLEYFYSIKDKHCLTHTADHYACVIDLLSRFGRFKEAE
EIISQMPMKPDKFLWASLLGGCRVHGNVELAKRAAEALFEIEPENAATYVTIANVYATAG
KWTEVAKIRRVMEEKGVVKKPGISWINLQRKDYVFLVGDKSHPRSKEIYEFLGELWRRMK
EEGYVPAIDNVLHDVEEEQKEQNLSYHSEKLAVAFGIIATPPGTQIKVFKNLRTCVDCHT
AIKYISKIEERRIIVRDSSRFHCFEGGSCSCKDYW
Download sequence
Identical sequences K4AZQ5
Solyc01g095160.2.1 XP_004229908.1.44838 Sopim01g095160.0.1 Solyc01g095160.2.1

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