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Domain assignment for Solyc02g070710.1.1 from Solanum lycopersicum v.2.3

Domain architecture


Domain assignment details

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No Significant Hits.

Weak hits

Sequence:  Solyc02g070710.1.1
Domain Number - Region: 51-143,385-585
Classification Level Classification E-value
Superfamily TPR-like 0.0236
Family Tetratricopeptide repeat (TPR) 0.043
Further Details:      
 
Domain Number - Region: 402-447,541-582
Classification Level Classification E-value
Superfamily TPR-like 0.0282
Family Tetratricopeptide repeat (TPR) 0.037
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) Solyc02g070710.1.1
Sequence length 614
Comment evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:34942957-34944801 transcript_region:SL2.40ch02:34942957..34944801- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KZV9_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "
Sequence
MMNRTYRNVVNWLSPIPKFRPLKSSIESLCNAKRLTEALRLAFDNPIEADYTIYSNIIQL
CIDLKAHKQGRLVHSHIITTGFPSNVHLGTKLIIFYTMSCDMVSARKMFDKLPERNVVSW
TALLSGYSQNGDSQEALNVFVAMHREGVRANQFTYGSVLRACTSMSCIYLGKQIQGCIQK
SRFVDNLYVQSALVDFNSKCGEMEDAFCVFELMAERDLVSWNVMISGYAFRGYNIDAFLL
FRWMFRQGILPDCFTLGSVLKASVGGGNCGGLAKISMIHGCIIRLGYGSYSIISGALVDA
YVKCGNLANASYIYKKMQNKDRISCTALITGYAREGKNINECLELFCQLHRNHREIDSII
LCSMINICANTASLSLGRQLHAIAIKYQSTLDVAMSNVLVDMYAKTGEIEDANNVFQHMT
KKNVISWTSMISAYGVHGRGVDAVSYFKKMEREGFEPNDITFLSLLFACSHNGLTAEGWE
CFSEMVRKYKIVPRDEHYSCLVDIFARSGCLNESYDLICRMNIKPSASLWGSVLGACSIY
SNMDLGKVAARHLCNIEPTNAVGYVVLASMYSAAGLWDSAWKERDVVQTRRLPKDPGYSL
FHSGNDMVALLPTG
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Identical sequences K4B852
Sopim02g070710.0.1 Solyc02g070710.1.1 XP_004233109.1.44838 Solyc02g070710.1.1

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