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Domain assignment for Solyc03g120070.2.1 from Solanum lycopersicum v.2.3

Domain architecture


Domain assignment details

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Strong hits

Sequence:  Solyc03g120070.2.1
Domain Number 1 Region: 162-370
Classification Level Classification E-value
Superfamily HCP-like 0.00000023
Family HCP-like 0.033
Further Details:      
 
Weak hits

Sequence:  Solyc03g120070.2.1
Domain Number - Region: 407-505
Classification Level Classification E-value
Superfamily TPR-like 0.0062
Family Tetratricopeptide repeat (TPR) 0.051
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Solyc03g120070.2.1
Sequence length 579
Comment genomic_reference:SL2.40ch03 gene_region:62621404-62624956 transcript_region:SL2.40ch03:62621404..62624956+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MRA3_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "
Sequence
MQPLLLVSEESQFLLRILNGSFQTLDIIKDRIFHDFANLFCSKANLDVIDMRQENVMHSV
NRDELGSKDWSSKGNNSNPEGDSTAGFSVLDTMLKRSLDRLKSMRERISLAEAGINYCTW
EINFNKDAYVVRAMCLDGQLGAALSLWWNMIQNSIVPDVITHNYLINALCKNGELEKAEW
IVRGMLYRGPSPTCAAFNSLIRGYCLVNDVDNALNTFSTMANHGIVPNRVTCNILVHALC
KKGLLEEANNLFHKLLSKVHNGGSSNLITSTIMMDGCFKNGDTDQALAFWERMLLERTQV
DKVSYNVVIHGFCLSHDLGTAYKYCCEMLKLGFVPDVYSYNTLIGALCRQGKISDACYIY
DVMTGMGVKPDHITYRMIIQGLCINREIDRANCFLDYMLEYSLIPEPLVWNVIINGYGRC
GDIQKASYIREKMVACGVLPNIYTYNALIYAQIKSGNLSAAQSLEKELLLYGLTPDSVTY
NLLIGAACNLGLIHSALQLHDKMLRKGCQPDVITYTELLKVFCVQGMMREADKLFGRLMA
SGLAVDHVPFLILMKRYCRMGEFNEVYDLHQKWLETMPR
Download sequence
Identical sequences K4BMF6
Sopim03g120070.0.1 Solyc03g120070.2.1 XP_019068715.1.44838 Solyc03g120070.2.1

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