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Domain assignment for Solyc07g007390.2.1 from Solanum lycopersicum v.2.3

Domain architecture


Domain assignment details

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Strong hits

Sequence:  Solyc07g007390.2.1
Domain Number 1 Region: 37-143,509-585
Classification Level Classification E-value
Superfamily TPR-like 4.69e-27
Family Tetratricopeptide repeat (TPR) 0.0019
Further Details:      
 
Domain Number 2 Region: 317-411
Classification Level Classification E-value
Superfamily CAD & PB1 domains 7.01e-16
Family PB1 domain 0.0062
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) Solyc07g007390.2.1
Sequence length 778
Comment genomic_reference:SL2.40ch07 gene_region:2125803-2128660 transcript_region:SL2.40ch07:2125803..2128660+ go_terms:GO:0005488 functional_description:"At1g62390-like protein (Fragment) (AHRD V1 *--- C0JCT9_9BRAS); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "
Sequence
MGKESWTKSKKIGGKSGESSSPRAFDKDTAVFIAMSKELKDEGNKLFQKRDYEGAMLKYD
KAIKLLPRNHIDVSYLRSNIAACYMQMGLSEYPRAIHECNLALEVTPKYSKALLKRARCY
EALNRLDLAQRDVNRVLEMEPNNLMATEIAERVKTTIEERGIGVNDIPVDLIPVPEYVEP
TFVSSHSKSSKEKALKKKIKKVEEKMVNGKAEEKEFDAGVDLKQTDNRNEERNTEDQNEN
TDKDQTKEEKVDDKTEGNKAENKTNRKKAKDKSKEKKNKDKIEVNKVKDRFEENKDEDNE
ERKTEDKLVVEEIISHTTEEEPKRTVKLVFGDDIRWAQVPVDCSILTLREIIGDRFPSLK
AVLIKYRDQEGDLVTVTTNEELRWAEASVGHGSIRFYIVEVSPEQDPFYEKIKGVEDDHK
YNARHDKIVENGNVETSKELHNGPVCINDWIFQFSNLFKNYVGFESDDYLDLHEVGMKLY
SEALEEAITSEEAQYLFSTAGETFQEMAALALFNWGNVHMSRARKRVYLKEDSSGESLLA
QIKIAYDWALKEYSKAGERYEEALNIKPNFYEGILALGQQQFEQAKLSWYYTISTGVNLD
SWPSTEVLQLYNSAEENMERGMQMWEEAEEQRLNELSSTNKLQKMKSENLFKGISADEAS
EQAANMMSQINLLWGTMLYERSLMEFKLGLPLWQESLEVAVEKFELAGASPTDIAVMIKN
HCSNSTATEGLGFNIDEIVQAWNEMYEAKRWERGVPSFRLEPLLRRRVSKLYHALELA
Download sequence
Identical sequences K4CBK9
Solyc07g007390.2.1 Sopim07g007390.0.1 XP_004242725.1.44838 Solyc07g007390.2.1

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