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Domain assignment for Solyc08g078280.1.1 from Solanum lycopersicum v.2.3

Domain architecture


Domain assignment details

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No Significant Hits.

Weak hits

Sequence:  Solyc08g078280.1.1
Domain Number - Region: 276-373
Classification Level Classification E-value
Superfamily TPR-like 0.00066
Family Tetratricopeptide repeat (TPR) 0.027
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) Solyc08g078280.1.1
Sequence length 476
Comment evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:59258619-59260049 transcript_region:SL2.40ch08:59258619..59260049- go_terms:GO:0008270,GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MPU5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "
Sequence
MFLPSISRLFADTKSLNKPIFSLKLVHLLSTSSSSAGEYLSHLLKNKNVSGMERTLSSVR
SKLDARCVDEVLEKCAVDDPQMCLRFFIWAGFQSSYRHSSYMYSRAYKLLGVDRKPQIIR
DIIEAYRMHKYVTSAKMFKVVLNLCREGKDAILGLWVLRKMKELNCRPDTTMYNVVIRLL
CEKGDMDEAMGLMREMDLIDVHPDMITYVVMIKGLSEVGRLEEACGLTKAMREHGCIPNT
VTYSALLDGICRFGSLERALELLREMEKDGGQCKPNVVTYTTVVQNFVEKCQSIEALSIL
DQMMDFGCKPNRVLISTLIHGLCKEGHVEEAHKVIDRVAKSGISYGSCYSSLVLSLFRIG
KVEDAEMFFRRMLTGGLKPDSYTSSTIIRWLCQQNRILDGYHLIEQSASVSSIDSDIYSV
LMAGLCDANHLAEAANLAHLMVEKRIQLKGPVKNVIECLRRCGKEDLASSIGNVKS
Download sequence
Identical sequences K4CNI7
Solyc08g078280.1.1 Sopim08g078280.0.1 Solyc08g078280.1.1

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