SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for Solyc09g011020.2.1 from Solanum lycopersicum v.2.3

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  Solyc09g011020.2.1
Domain Number 1 Region: 95-116,168-339
Classification Level Classification E-value
Superfamily TPR-like 0.00000171
Family Transcription factor MalT domain III 0.092
Further Details:      
 
Weak hits

Sequence:  Solyc09g011020.2.1
Domain Number - Region: 50-131
Classification Level Classification E-value
Superfamily TPR-like 0.0106
Family Transcription factor MalT domain III 0.092
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Solyc09g011020.2.1
Sequence length 418
Comment genomic_reference:SL2.40ch09 gene_region:4359339-4365508 transcript_region:SL2.40ch09:4359339..4365508- functional_description:"Kinesin light chain-like protein (AHRD V1 *-*- D8LTR1_ECTSI)"
Sequence
MFRIGAKLYRAARIGGSAVSDFRSPSTRFFSINNNVNTGFKTNPVALQMINYALSLARAQ
KSDESYAQAQLVLEQCHSTQSDESAKGLVMLAMSTLFSERGNFSEAIEKLQKIQDLGLST
LAVRVAASEALAGLYLESYQDDFSSATADMCLQLLETIRLEIGGGGSDILEARAKALKGL
VELVHGNAESAESFFEGAQGDKGCFGNVALSFGEFLHCKRNSQMARELYQRAMQDVSERK
DFTDSQSISACNMNLEETLLGATCALGQLEAHLGNFDDAEEILTAALKKAEECFGNYHPK
VGIILTCIALMYRHKAAMEQSSSLLIQEGLYRRAIEVLKAPPLEVEGVVATRSRRDILAL
ARGGYAETLIVQQNRKAEGEKLKQWAETAWTSRRLSLAEALESSAKVSVIDTRISRVL
Download sequence
Identical sequences K4CRC8
Solyc09g011020.2.1 XP_004246416.1.44838 Solyc09g011020.2.1 Sopim09g011020.0.1

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]