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Domain assignment for Solyc09g082400.1.1 from Solanum lycopersicum v.2.3

Domain architecture


Domain assignment details

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Strong hits

Sequence:  Solyc09g082400.1.1
Domain Number 1 Region: 471-642
Classification Level Classification E-value
Superfamily TPR-like 0.00000211
Family Tetratricopeptide repeat (TPR) 0.09
Further Details:      
 
Domain Number 2 Region: 242-329
Classification Level Classification E-value
Superfamily TPR-like 0.0000347
Family Tetratricopeptide repeat (TPR) 0.031
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) Solyc09g082400.1.1
Sequence length 739
Comment evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:63553197-63555416 transcript_region:SL2.40ch09:63553197..63555416- go_terms:GO:0008116 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KYW1_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "
Sequence
MPSSFSVQRSNLLLSQIQKFIPKKWTSVRESNTRKNCGQTLLCSSHECISGPCKGSNESM
VDCLLTTLKDFAGQGHICKAFRTFSLIRTHVSSQTPCDLVIQSLSSLLLCCTNSKSLSEG
KQIHACIINLGIAHSWNLVPRIITFYTTSGLVDDAHVIAETSNILHPLPWNLLISSYVKK
RQNEEAFSAYRQMVNRGIRPDDFTYPSVLKACGEQLNLAFGRDIHNSIDASLLEHNLFVQ
NALVSMYAKCGEVDVAHDIFERMPVKDAVSWNSMISGYASKGRWSKAFEIFDRMRATDAE
FDIITWNTIAGGCLKTGNFVGALKLLSQMRTCGIQLETVATLIGLGACSHTGLLEIGKQI
HGLVIRSHLDDFDNVRNALINMYARCKALKQAHLLFQFVDSKTVITWNTIISGFAHWDRS
EETSFLFREMLLSGVEPNYITIAGILPLCARVANLQHGKEFHCYLTRREGFEEYLLLWNS
LVDMYARSGKVLAARKLFNLMSKKDAVTYTSLIAGYGIQGEGREAIELFNEMIRLHIKPD
HVTMVAALSACSHSGLVMQGQKLFEQMQSTYGINPHLQHFSCMVDLFGRAGLLKKAKEII
IKMPFEPTPEMWATLLGACRIHRNTEIGEWAAEKLLELRPDKPGYYVLIANMYADAGRWN
KLAKVRTVMRDFGVRKSPGCAWVDTGSGFSPFLVSDTSSGQTNEIYCLLGGLNRLMKDTG
HLTTEDSSSEEELCEGLLL
Download sequence
Identical sequences K4CVL7
XP_004247672.1.44838 XP_010326678.1.44838 XP_019071366.1.44838 XP_019071367.1.44838 Solyc09g082400.1.1 Sopim09g082400.0.1 Solyc09g082400.1.1

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