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Domain assignment for Solyc11g062270.1.1 from Solanum lycopersicum v.2.3

Domain architecture


Domain assignment details

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Strong hits

Sequence:  Solyc11g062270.1.1
Domain Number 1 Region: 30-111,380-493
Classification Level Classification E-value
Superfamily TPR-like 0.0000000000166
Family Tetratricopeptide repeat (TPR) 0.036
Further Details:      
 
Domain Number 2 Region: 71-153,186-301
Classification Level Classification E-value
Superfamily TPR-like 0.00000701
Family Tetratricopeptide repeat (TPR) 0.028
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) Solyc11g062270.1.1
Sequence length 664
Comment evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:46260806-46267465 transcript_region:SL2.40ch11:46260806..46267465+ go_terms:GO:0005047 functional_description:"Signal recognition particle protein (SRP72) (AHRD V1 *-** Q5CNY3_CRYHO); contains Interpro domain(s) IPR013699 Signal recognition particle, SRP72 subunit, RNA-binding "
Sequence
MAPKPKEKAKASAVATPAIAIEDLFTSLNRHIQRSEYEQAVKVSDQILAAAPGDEDAIRC
KVVALVKADSIEDALVAIKDSSKKGSVDLSFFKAYCLYRQNKLEEALESLRGQEGSTESM
LLESQILYRLGKMGASVDIYQKLPKSTIDSLEINLVAGLVSAGRSSEVQGTLDSLRVKAT
SSFELAYNTACSLIEREKYKDAEQLLLSARRIGQETLMEENLADDDVEIELAPIAVQIAY
VQQILGNTQEAVASYTDLVKRNLADESSLAVAVNNLIALKGPKDVSDGLRKLDKLIEKSD
GPEKFQLARGLDLKLSQKQREAIYTNRVLLLLHSNKMDQARELVSALPGMFPGSLMPVLL
QAAVHVRENKAAKAEEILGQYVDKFPDRSKVILLARAQVAAAAGHPQIAADSLAKIPEIQ
HKPATVATIVSLKERAGDIDGADAVFDSAIKWWSNAMTEDNKLNTIMQEAAAFKLRYGRK
DEAARLYEQLVKSHGSIEALVGLIQTAAHGDIEKAEAYEKQLKPLPGLKALDVDSLEKTS
GAKHAEKGTNAGVTETYEAKSKDKAKKKRKRKPKYPKGFDPANPGPLPDPERWLPKRERS
SYRPKRKDKRAAQVRGSQGAVAKEAASNSDAKSNQPANPKGASQHAGNVQSKASSKSSRK
KSRK
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Identical sequences K4D938
Solyc11g062270.1.1 XP_004250878.1.44838 Solyc11g062270.1.1 Sopim11g062270.0.1

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