SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for Solyc12g099840.1.1 from Solanum lycopersicum v.2.3

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  Solyc12g099840.1.1
Domain Number 1 Region: 352-478,515-614
Classification Level Classification E-value
Superfamily HCP-like 0.00000000131
Family HCP-like 0.033
Further Details:      
 
Weak hits

Sequence:  Solyc12g099840.1.1
Domain Number - Region: 107-264
Classification Level Classification E-value
Superfamily HCP-like 0.00102
Family HCP-like 0.03
Further Details:      
 
Domain Number - Region: 533-574,661-753
Classification Level Classification E-value
Superfamily TPR-like 0.00104
Family Tetratricopeptide repeat (TPR) 0.034
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) Solyc12g099840.1.1
Sequence length 790
Comment evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65162719-65165091 transcript_region:SL2.40ch12:65162719..65165091- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MT42_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "
Sequence
MLKLHRAFKFAGTGNQHLLCKFFRSTPFLHQEQLLSSINNENPTDSPSQNLVEQLRQLRI
LIQQRRMENAKGILGTLIHTSSVSQLYSLFSPSPAKPLLSDLLFSLYLESKLINQAEELY
SLIREEKKFPSLSAINVFLESLNSLRKYKKTLEVFSDVMNWGIRVDKASYGKAILSAVKI
GDLGKALELLDCMRSGKVGMDKFVYNVVMGGLCKEKRVVEARKLFDEMLERRVARSMVTY
NILMDGYCKMGKVEEAFELRETMKNDNVEPNIVTFNTLLSGLCKSGKMEEANCIVEEMKS
YGFVPDGFTFSILFDGLSRSDDVNSSLALYEEVVKTGVKLNEYTSSVLLNGLCKKGKTDK
AAEILKKMLGNGLTPTDVLFNTILSGYCKEGNMEKAYLTIDEMEISGVKPSCVTFNTLIT
KFCELGMMEEANKWLRKMLEKSVSPNVQTYNILIDGYGRKQEFVRCFEILEEMENNGLNP
NVITYGSLINSLCKDGRLLEADVVLSDMISRGVKPNAQVYNMLIDGHCMRGRMTDAFRCL
EKMLQSDAETTLVTYNTLLNGLCKKGKTKEAEELVADIQLKGFVPDVITYNSLISAYSDA
RDSEKCYEMYEKMKTSGIKPTINTIHPLIRVSKEGKNGLVSIDKIVEEMSQMDLSPDRVV
YNELVHCYALHGEVQKSLAMHQEMVERGIPSDKRTYNSLIMVHLKEGRCQEAKNFVDQMK
ANSIVPSDETYNILVEGHCKLKDFSGAYIWYREMVDNGYTPPANICEELLSGLLEEGRLE
ETQRNEFSRN
Download sequence
Identical sequences K4DI05
Sopim12g099840.0.1 XP_004253145.1.44838 Solyc12g099840.1.1 Solyc12g099840.1.1

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]