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Domain assignment for Solyc04g071520.2.1 from Solanum lycopersicum v.2.3

Domain architecture


Domain assignment details

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Strong hits

Sequence:  Solyc04g071520.2.1
Domain Number 1 Region: 90-168
Classification Level Classification E-value
Superfamily Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 3.66e-18
Family Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 0.0013
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Solyc04g071520.2.1
Sequence length 244
Comment genomic_reference:SL2.40ch04 gene_region:56093326-56095281 transcript_region:SL2.40ch04:56093326..56095281- go_terms:GO:0005634 functional_description:"Os11g0166800 protein (Fragment) (AHRD V1 *--- Q0IUD4_ORYSJ); contains Interpro domain(s) IPR010990 Transcription elongation factor, TFIIS/elongin A/CRSP70, N-terminal "
Sequence
MELDELRLILKNSSVDLWGLIDTAISVAILDHGNELRSRRDAIVEKLYVPLLSNNSNSDG
NYEIMKRIERNIDDDKLKTEENSNEEDLEISKILRIKNHFEIPNQSEKCLVDQLQSLAEM
DINFKVLEKTNIGRHVNKLRKHSSNDVRRLVKLLIRRWKDIVDEWVRLNTLMEDTDEANI
SNDSSSYCDHKHSVEKRNNISPSSKRLREDYLEEHYAKIGRSREVDLEDVGKPKNSVVVN
SKYW
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Identical sequences K4BTE4
Sopim04g071520.0.1 Solyc04g071520.2.1 Solyc04g071520.2.1 XP_004237797.1.44838

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