SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for GRMZM2G024612_P02 from Zea mays subsp. mays

Domain architecture


Domain assignment details

(
show help)

No Significant Hits.

Weak hits

Sequence:  GRMZM2G024612_P02
Domain Number - Region: 2299-2489
Classification Level Classification E-value
Superfamily Tropomyosin 0.000373
Family Tropomyosin 0.0017
Further Details:      
 
Domain Number - Region: 861-1098
Classification Level Classification E-value
Superfamily Tropomyosin 0.00288
Family Tropomyosin 0.0066
Further Details:      
 
Domain Number - Region: 1687-1926
Classification Level Classification E-value
Superfamily Tropomyosin 0.0294
Family Tropomyosin 0.0017
Further Details:      
 
Domain Number - Region: 1214-1386
Classification Level Classification E-value
Superfamily Tropomyosin 0.0641
Family Tropomyosin 0.008
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Protein: GRMZM2G024612_P02   Gene: GRMZM2G024612   Transcript: GRMZM2G024612_T02
Sequence length 2655
Comment seq=translation; coord=5:79575105..79584428:-1; parent_transcript=GRMZM2G024612_T02; parent_gene=GRMZM2G024612
Sequence
MDHRGGGGGGGNKNRTDLLAAGRKKLQQFRKKKGKRGPGNKADADADAEAGEGAPKAAEE
SVPEPKSPVGLKLLAGEGGGGSTPFEEAERSQAEQCNGEGPGTAESSSVESSNAVQEQET
VQEQETDDVSDAHHVGPSEQGISEHPESQTAGGRDLSLQATSGDSIGDDNVGRAQLGDVD
SMELNASSEGNGADGDCNQLGEHQQVEMDAVERPTSSSFEEFTELPIHSQGIEADNIHGE
GAQEMVMDVSGRPLDGDIQHDIEPTASAEIDAETALEESTVAASIVIPESTARGTEYERD
TGYETDGVDKEALLEDPSMVHVSDEAVTIDDLSVQAKPTASADMPLCEQKGDPALSRSAV
LQGIMPLHFEDIQNHMFSATLSRDFLQLQLDEAAGLYSDFTQQSSDNTTQLRVLLKETEE
SKLAVDRELHQCRHELSKVNIEKGQLELTMASLKEEINTSNTRCTYLESELHSSKESTEQ
IHSELANSRLLLEALQKENMELTASLAFEKEAKKEVEEQRDHLSSDNRKLLSELSGLELS
LASVKEEMDASSSRCNVFECELRSSNENMNHTLTELANCQALLETLQKDNLELSANSASE
REAKMKLQEDNLYLCNEKGKLSSNLRELNDKLEVSYAKHKQLESHVKDTETYFGQLTEQL
IEENLYTSISIDIYQSTTKDLDTKYNIVLGQFQNIMRQELHLDSSEVTTENAERAIMTPR
HDSHGNNQCLLNLVNANDSCNSTALLSLKGHLEVAKSDLHNLEKLLERISSRSDGRVLVS
KLIKSFESKGSDDDTGLSEGEHDNLQKSTREMLSCLGEKFIAMSSDITKTEEYLAELCNK
IELYVKSTVQHDRDRQCTVVLEAKMDELAGKLSNYKETIDNLHNQVAIVQQDANSNAGKL
IDQAELLQKDAVERISILENERMSLSDLLSEVTNKLTSLGDAVFPSGSSEIEGLNFCTLS
CVDLVARSFQSLQEKLEAAQIDNAQLNSSLVELRKAIGVAQERSEHADGIVKKLYDSLQE
LLCDSLGSSNEFGARYSVEEPIESQYGRLIAHLKNLLHDHHSALSTNAELELSLLSKCEE
VEELNMRCSSLLKKLDEVCILNEELKSASSSKNVTLDKLHSRCLTVAEMLASCSANHSST
VQLISDIGEGSSKEDHILTTLLPCIEADVASCIEKFENAAEEIRLSKICLQEISIFDQIS
FEKWSYPLPTLIKEEVLPKICDLQDRFDQLNALNIQLETEVAVLKDGMKELDEDLGTSRS
ELQKKVSELEQLDQKFSSVKEKLSIAVAKGKGLIVQRDSLKQSLLEKSGEIEKLTQELQL
KETLLKELEAKLKSYTEADRIEALESELSYIRNSATALRDSFLLKDSVLQRIEEVLEELD
LPEQFHSRDIVEKIELLSKMAIGTPFTLPDGDKGSSVDGHSESGVAMNVIDDEQNSNSNS
VSDEVKSKYEELNRRFCELAEQNNMLEQSLVERNSLIQKWEEVLGQISIPPQFRMLEAED
KLAWLGNRFLEVEQERDSLQLKIEHLEDSSEMLIADLEESHKRISELSAEVVAIKAEKDF
FSQSLEKLRFEFLGLSEKVVQDEFVRDKLRMDLSELRDKFAEKTEESRHYHEMDTEVHKL
LNLVQNTLQDSTNSEISSGGISAVLCLGKMLKKLLDDYGTLLYKSTEGNFAERDIQLEDI
KPSKDASKSDTGAYEKEMELNSLNNELDHAHNNLALAQQECDEAVEKAQSLMMEIETLHA
QISKLQESDAEQMQKKEMELNSLNNELDHARNNLALVEQERDEAVEKAQSLMMEIETLHA
QISKLQESDAEQMQKYQSLVLELESVGKQRDNLQERLNQEEQKCASLREKLNVAVRKGKG
LVQHRDSLKQTMEEMNVVIEKLKSERKQHIESLETEKSSLMDRLAENEKSLHETNQYLSG
LLNALNRVDVAREFDMDPITKVEKMAKFFLDLQSTVASSQNEVMKSKRATELLLAELNEA
HERADNLQEELVKAEAALSESSKQYIVTESARADAVRQLELIMHAQSQTRRRQADHLLEL
NSTSSQLREVCFELSHCLVNTFSKDVDLICYVVNFMRSSGKLMDDTNTMDIPIASKHVLS
NRTNNKKAHIPNAPLEIKTDDTDDSQFLHHLAIACHALSDCVKDCNDLKRNIDEHDFSVE
QKATELFDVMSTLKNRFTSQHNELESLRAKFVELQSEMEERDKEIIFAQRNMSLLYEACA
SSVAEIEGISDIYPGKHSYAVEHSADECIKSIVEQLVMAVKTSQNSNEGSTKELKAIVLE
LQQELQAKDVQISTISSDLSYQLRVAESSAKQFSVDLEDARMELQNLEKQVDVLQNQKKD
LETQLNELKNMESMASEQHGRIEKLTDELSRKDQEIEGLVQALDEEEKELEILENKSLQL
EQMLQEKEFALKTSEVSRTKALAKLATTVDKFDELHSLSENLLAEVENLQLQLQERDSEI
SFLRKEVTKSTNELLTTEESNKNYSSQLNGFMKWLERELLQFGFHSESANDYDYTQFPVY
MDMLDKKIGSLIAESDDLRVTVQSKDSLLQVERAKIEELMRKSDGLEASLSQKDSQIGLL
RRDRASNQQSRSINLPGTSEIEQMNDKVSPAAVVTQIRGARKVINDQVAIDVEMEKDKPF
DDEDDDKGSQAIDCS
Download sequence
Identical sequences GRMZM2G024612_P02 GRMZM2G024612_T01|PACid:20881604

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]