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EGF/Laminin superfamily domain assignments
in
Meloidogyne incognita

Assignment details

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Meloidogyne incognita has 119 significant domains in 42 proteins.

     

Sequence ID   Evalue   Region   Family  
gnl|MincDB|prot:Minc00111   0.0000000725   366-415   Laminin-type module  
  0.000088   33-67   EGF-type module  
  0.000181   2308-2343   EGF-type module  
  0.00026   331-368   EGF-type module  
  0.000279   80-127   Laminin-type module  
gnl|MincDB|prot:Minc00471   0.00000000265   69-113   EGF-type module  
gnl|MincDB|prot:Minc01010   0.000000000641   3664-3711   EGF-type module  
  0.00000347   3637-3677   EGF-type module  
  0.0000878   1831-1868   EGF-type module  
  0.000397   689-732   EGF-type module  
  0.000758   3982-4022   EGF-type module  
  0.00082   1793-1835   EGF-type module  
gnl|MincDB|prot:Minc01194   0.0000187   58-93   EGF-type module  
  0.00239   157-198   EGF-type module  
  0.00902   114-156   EGF-type module  
gnl|MincDB|prot:Minc03406   0.0000036   106-142   EGF-type module  
  0.0000979   69-105   EGF-type module  
gnl|MincDB|prot:Minc03486   0.000000000335   17-65   EGF-type module  
gnl|MincDB|prot:Minc03648   0.000000000141   285-325   EGF-type module  
  0.00000000621   246-290   EGF-type module  
  0.000000097   202-248   EGF-type module  
  0.000000106   122-157   EGF-type module  
  0.0000157   157-199   EGF-type module  
  0.00028   51-86   EGF-type module  
gnl|MincDB|prot:Minc03856   0.000000268   521-559   Integrin beta EGF-like domains  
  0.00000363   563-608   Integrin beta EGF-like domains  
  0.0103   486-509   Integrin beta EGF-like domains  
gnl|MincDB|prot:Minc04636   0.000000000147   277-317   EGF-type module  
  0.00000000559   195-239   EGF-type module  
  0.0000000235   238-282   EGF-type module  
  0.000000163   115-150   EGF-type module  
  0.0000221   153-192   EGF-type module  
gnl|MincDB|prot:Minc05328   0.000000000126   134-174   EGF-type module  
gnl|MincDB|prot:Minc05329   0.000000000983   5-45   EGF-type module  
  0.000000059   46-83   EGF-type module  
gnl|MincDB|prot:Minc07000   0.000000734   2760-2794   EGF-type module  
  0.00000771   1798-1830   EGF-like domain of nidogen-1  
  0.0000231   1085-1121   EGF-type module  
  0.0000373   2803-2844   EGF-type module  
  0.0000378   1434-1466   EGF-type module  
  0.0000866   1377-1415   EGF-like domain of nidogen-1  
  0.000184   77-109   EGF-type module  
  0.000294   1605-1638   EGF-type module  
  0.000315   2188-2217   EGF-type module  
  0.000432   325-363   EGF-type module  
  0.000482   378-413   EGF-type module  
  0.00193   2656-2690   EGF-type module  
  0.00273   246-281   EGF-type module  
  0.00524   1179-1212   EGF-type module  
  0.00586   1653-1686   EGF-type module  
  0.00776   2141-2169   EGF-type module  
  0.00958   2706-2737   EGF-type module  
  0.0143   275-329   EGF-type module  
  0.0165   2085-2120   EGF-type module  
  0.0231   1923-1955   EGF-type module  
  0.0336   2609-2639   EGF-type module  
  0.0503   1567-1587   EGF-type module  
gnl|MincDB|prot:Minc07068   0.00000000324   48-92   EGF-type module  
gnl|MincDB|prot:Minc07096   0.0000359   1427-1469   EGF-type module  
  0.000375   344-387   EGF-type module  
  0.00044   1465-1502   EGF-type module  
gnl|MincDB|prot:Minc07461   0.00000000126   230-282   Laminin-type module  
  0.000000293   289-340   Laminin-type module  
  0.0000339   338-385   Laminin-type module  
gnl|MincDB|prot:Minc07462   0.00000000106   785-833   Laminin-type module  
  0.00000000179   1003-1053   Laminin-type module  
  0.00000000262   904-951   Laminin-type module  
  0.0000000145   1101-1149   Laminin-type module  
  0.0000000218   1196-1244   Laminin-type module  
  0.0000000977   1051-1103   Laminin-type module  
  0.000000149   294-353   Laminin-type module  
  0.000000156   862-906   Laminin-type module  
  0.00000187   421-478   EGF-type module  
  0.00000419   351-410   Laminin-type module  
  0.0000363   1149-1194   Laminin-type module  
  0.0000419   956-997   Laminin-type module  
  0.000198   491-528   Laminin-type module  
  0.000276   1254-1297   Laminin-type module  
  0.0014   749-787   EGF-type module  
gnl|MincDB|prot:Minc09510   0.0000024   92-128   EGF-type module  
  0.000168   53-91   EGF-type module  
gnl|MincDB|prot:Minc10577   0.00000000172   161-201   EGF-type module  
  0.00000000249   204-245   EGF-type module  
  0.000000161   246-283   EGF-type module  
gnl|MincDB|prot:Minc11499   0.0000000446   366-415   Laminin-type module  
  0.000109   33-67   EGF-type module  
  0.000256   331-368   EGF-type module  
  0.000279   80-127   Laminin-type module  
  0.000463   2305-2340   EGF-type module  
gnl|MincDB|prot:Minc11926   0.0000058   46-76   EGF-type module  
gnl|MincDB|prot:Minc12577   0.00000000034   125-173   EGF-type module  
  0.00000709   178-214   EGF-type module  
  0.000559   261-304   EGF-type module  
  0.000839   212-247   EGF-type module  
gnl|MincDB|prot:Minc12856   0.0000124   94-135   EGF-type module  
  0.000216   507-542   EGF-type module  
  0.0279   387-440   EGF-type module  
  0.0329   273-307   EGF-type module  
gnl|MincDB|prot:Minc13054   0.0000194   58-93   EGF-type module  
  0.00171   156-197   EGF-type module  
  0.00516   113-155   EGF-type module  
gnl|MincDB|prot:Minc13179   0.000000000642   766-816   Laminin-type module  
  0.0000000012   330-395   Laminin-type module  
  0.00000000268   861-903   Laminin-type module  
  0.00000000753   814-863   Laminin-type module  
  0.00000000921   1022-1075   Laminin-type module  
  0.000000012   970-1017   Laminin-type module  
  0.0000000145   921-972   Laminin-type module  
  0.000001   263-319   Laminin-type module  
  0.00000198   417-455   Laminin-type module  
  0.00000201   453-502   Laminin-type module  
  0.0000103   505-543   Laminin-type module  
  0.0000725   1073-1127   Laminin-type module  
  0.000126   1130-1177   Laminin-type module  
gnl|MincDB|prot:Minc13255   0.000000393   153-211   EGF-type module  
  0.00000574   19-49   EGF-type module  
  0.0000806   513-553   EGF-type module  
  0.0327   233-259   EGF-type module  
gnl|MincDB|prot:Minc13838   0.0000000147   2024-2067   EGF-type module  
  0.0000000155   2139-2180   EGF-type module  
  0.00000155   2104-2147   EGF-type module  
  0.00000351   2413-2454   EGF-type module  
  0.0000046   1988-2027   EGF-type module  
  0.0000046   619-658   EGF-type module  
  0.00000524   889-924   EGF-type module  
  0.0000142   3398-3439   EGF-type module  
  0.0000439   2063-2107   EGF-type module  
  0.00661   3358-3401   EGF-type module  
gnl|MincDB|prot:Minc13979   0.0001   1854-1912   EGF-type module  
gnl|MincDB|prot:Minc14588   0.00000000419   971-1024   Laminin-type module  
  0.000385   1022-1067   Laminin-type module  
  0.000455   37-67   EGF-type module  
gnl|MincDB|prot:Minc14827   0.00000000017   299-345   EGF-type module  
  0.000000197   392-433   Laminin-type module  
  0.00000711   349-383   Laminin-type module  
gnl|MincDB|prot:Minc14846   0.00000000366   969-1022   Laminin-type module  
  0.000385   1020-1065   Laminin-type module  
  0.000402   37-67   EGF-type module  
gnl|MincDB|prot:Minc14945   0.0000000391   228-287   Laminin-type module  
  0.000201   171-217   Laminin-type module  
gnl|MincDB|prot:Minc15050   0.00000000703   12-52   EGF-type module  
  0.00406   68-108   EGF-type module  
gnl|MincDB|prot:Minc15313   0.000000000215   685-735   Laminin-type module  
  0.000000000257   594-642   Laminin-type module  
  0.000000000446   1028-1080   Laminin-type module  
  0.0000000234   1136-1190   Laminin-type module  
  0.000000067   1085-1138   Laminin-type module  
  0.0000123   1236-1285   Laminin-type module  
  0.0000251   989-1030   Laminin-type module  
  0.0000446   1189-1234   Laminin-type module  
  0.00067   640-682   Laminin-type module  
  0.00206   733-782   Laminin-type module  
gnl|MincDB|prot:Minc15315   0.000000356   7-36   Laminin-type module  
gnl|MincDB|prot:Minc15316   0.000000000391   583-631   Laminin-type module  
  0.000000018   311-372   Laminin-type module  
  0.000000022   775-818   Laminin-type module  
  0.0000000474   629-677   Laminin-type module  
  0.0000000977   485-528   Laminin-type module  
  0.000000195   440-487   Laminin-type module  
  0.00000053   370-427   Laminin-type module  
  0.000000865   675-722   Laminin-type module  
  0.000000893   534-580   Laminin-type module  
  0.00000262   720-772   Laminin-type module  
gnl|MincDB|prot:Minc16134   0.0000000000221   77-124   EGF-type module  
gnl|MincDB|prot:Minc17078   0.000000231   173-213   EGF-type module  
gnl|MincDB|prot:Minc18193b   0.000000042   172-223   EGF-type module  
  0.000000495   212-258   EGF-type module  
gnl|MincDB|prot:Minc18193c   0.0000000476   220-271   EGF-type module  
  0.000000719   260-306   EGF-type module  
gnl|MincDB|prot:Minc18259   0.00000706   860-902   EGF-type module  
  0.0000159   898-935   EGF-type module  
gnl|MincDB|prot:Minc18637   0.000000000709   69-115   EGF-type module  
gnl|MincDB|prot:Minc18978   0.000052   132-170   EGF-type module  
  0.00709   93-130   Integrin beta EGF-like domains  
  0.0147   190-207   EGF-type module  
  0.052   210-235   EGF-type module  
 
Weak hits:
gnl|MincDB|prot:Minc01195   0.000636   304-335   EGF-type module  
gnl|MincDB|prot:Minc01442   0.000335   30-73   EGF-type module  
gnl|MincDB|prot:Minc01936   0.045   302-333   EGF-type module  
gnl|MincDB|prot:Minc02171   0.0545   746-772   EGF-type module  
gnl|MincDB|prot:Minc02383   0.0698   13-42   EGF-type module  
gnl|MincDB|prot:Minc02721   0.00265   537-575   EGF-type module  
  0.0498   1071-1104   EGF-type module  
gnl|MincDB|prot:Minc03279a   0.00408   1993-2034   EGF-type module  
  0.0141   216-275   EGF-type module  
gnl|MincDB|prot:Minc03279b   0.00387   1993-2034   EGF-type module  
  0.0137   216-275   EGF-type module  
gnl|MincDB|prot:Minc03279c   0.00387   1993-2034   EGF-type module  
  0.0136   216-275   EGF-type module  
gnl|MincDB|prot:Minc03279d   0.00398   1993-2034   EGF-type module  
  0.0137   216-275   EGF-type module  
gnl|MincDB|prot:Minc03699   0.00135   112-150   EGF-type module  
  0.00683   64-87   EGF-type module  
gnl|MincDB|prot:Minc03986   0.0381   286-317   EGF-type module  
gnl|MincDB|prot:Minc04543   0.000194   6-37   EGF-type module  
gnl|MincDB|prot:Minc04818b   0.000114   152-192   EGF-type module  
  0.000228   193-233   EGF-type module  
gnl|MincDB|prot:Minc06148   0.1   601-634   EGF-type module  
gnl|MincDB|prot:Minc06685   0.000549   211-246   EGF-type module  
  0.00274   155-184   EGF-type module  
gnl|MincDB|prot:Minc08210   0.00124   118-146   EGF-type module  
  0.00236   64-86   Integrin beta EGF-like domains  
gnl|MincDB|prot:Minc08473   0.00268   696-722   Integrin beta EGF-like domains  
gnl|MincDB|prot:Minc09003a   0.00419   2053-2094   EGF-type module  
  0.00825   216-274   EGF-type module  
gnl|MincDB|prot:Minc09003b   0.00419   2053-2094   EGF-type module  
  0.00837   216-274   EGF-type module  
gnl|MincDB|prot:Minc09003c   0.00398   2053-2094   EGF-type module  
  0.00801   216-274   EGF-type module  
gnl|MincDB|prot:Minc09003d   0.00398   2053-2094   EGF-type module  
  0.00789   216-274   EGF-type module  
gnl|MincDB|prot:Minc10321   0.000376   205-241   EGF-type module  
  0.0272   150-179   EGF-type module  
gnl|MincDB|prot:Minc10608d   0.000114   152-192   EGF-type module  
  0.000228   193-233   EGF-type module  
gnl|MincDB|prot:Minc11250   0.0209   162-197   Laminin-type module  
  0.0406   77-118   Laminin-type module  
gnl|MincDB|prot:Minc12958   0.00199   88-126   EGF-type module  
gnl|MincDB|prot:Minc13055   0.000737   342-368   Integrin beta EGF-like domains  
  0.000901   312-337   EGF-type module  
gnl|MincDB|prot:Minc13877   0.0188   36-72   EGF-type module  
gnl|MincDB|prot:Minc17793   0.000854   546-572   Integrin beta EGF-like domains  
gnl|MincDB|prot:Minc18044   0.000436   128-184   EGF-type module  
gnl|MincDB|prot:Minc18191   0.000762   149-180   EGF-type module  
gnl|MincDB|prot:Minc18442   0.000699   50-71   Integrin beta EGF-like domains  
gnl|MincDB|prot:Minc18803   0.0519   50-87   EGF-type module  
gnl|MincDB|prot:Minc18976   0.00217   66-100   EGF-type module  
gnl|MincDB|prot:Minc18997a   0.000314   112-144   EGF-type module  
gnl|MincDB|prot:Minc18997b   0.000156   112-143   EGF-type module  

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Select to display   Genome       Domains   Proteins
No Yes ALL   719145 719145
No Yes Homo sapiens 76_38 Human 1736 621
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 532 163
No Yes Gorilla gorilla 76_3.1 Western gorilla 876 233
No Yes Pongo abelii 76_2 Sumatran orangutan 539 174
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 555 171
No Yes Papio anubis 76 Olive baboon 634 191
No Yes Macaca mulatta 76_1 Rhesus monkey 925 318
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 1183 386
No Yes Otolemur garnettii 76_3 Small-eared galago 551 171
No Yes Microcebus murinus 76_1 Gray mouse lemur 455 139
No Yes Rattus norvegicus 76_5.0 Norway rat 613 207
No Yes Mus musculus 76_38 House mouse 1015 344
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 515 145
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 529 164
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 521 161
No Yes Cavia porcellus 76_3 Domestic guinea pig 580 173
No Yes Oryctolagus cuniculus 76_2 Rabbit 478 160
No Yes Ochotona princeps 76 American pika 469 142
No Yes Tupaia belangeri 76 Northern tree shrew 407 132
No Yes Sus scrofa 76_10.2 Pig 585 211
No Yes Bos taurus 76_3.1 Cattle 632 189
No Yes Ovis aries 76_3.1 Sheep 602 193
No Yes Vicugna pacos 76_1 Alpaca 260 102
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 526 156
No Yes Mustela putorius furo 76_1.0 Domestic ferret 583 186
No Yes Ailuropoda melanoleuca 76_1 Giant panda 634 192
No Yes Canis familiaris 76_3.1 Dog 761 226
No Yes Felis catus 76_6.2 Domestic cat 592 185
No Yes Equus caballus 76_2 Horse 806 230
No Yes Myotis lucifugus 76_2.0 Little brown bat 502 169
No Yes Pteropus vampyrus 76_1 Large flying fox 529 164
No Yes Sorex araneus 76_1 European shrew 286 102
No Yes Erinaceus europaeus 76 Western European hedgehog 383 118
No Yes Procavia capensis 76_1 Cape rock hyrax 460 149
No Yes Loxodonta africana 76_3 African savanna elephant 690 216
No Yes Echinops telfairi 76 Small Madagascar hedgehog 391 135
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 616 199
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 271 99
No Yes Macropus eugenii 76_1.0 Tammar wallaby 454 139
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 621 199
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 616 176
No Yes Ornithorhynchus anatinus 76_5 Platypus 511 184
No Yes Saccoglossus kowalevskii v3.0   3261 466
No Yes Petromyzon marinus 76_7.0 Sea lamprey 221 94
No Yes Meleagris gallopavo 76_2 Turkey 509 175
No Yes Gallus gallus 76_4 Chicken 523 155
No Yes Anas platyrhynchos 76_1.0 Mallard 519 172
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 513 170
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 533 157
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 592 196
No Yes Anolis carolinensis 76_2.0 Green anole 539 160
No Yes Xenopus laevis African clawed frog 514 207
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 694 186
No Yes Latimeria chalumnae 76_1 Coelacanth 738 218
No Yes Lepisosteus oculatus 76 Spotted gar 888 241
No Yes Gadus morhua 76_1 Atlantic cod 618 198
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 995 299
No Yes Takifugu rubripes 76_4 Torafugu 2323 723
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 771 242
No Yes Oryzias latipes 76_1 Japanese medaka 740 228
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 627 196
No Yes Poecilia formosa 76 Amazon molly 687 203
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 1051 282
No Yes Astyanax mexicanus 76 Mexican tetra 752 239
No Yes Danio rerio 76_9 Zebrafish 1139 389
No Yes Oikopleura dioica   459 149
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 1671 332
No Yes Ciona intestinalis 76 Vase tunicate 438 155
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 2661 612
No Yes Adineta vaga   1146 278
No Yes Octopus bimaculoides 280   748 217
No Yes Crassostrea gigas 22 Pacific oyster 874 287
No Yes Lottia gigantea Owl limpet 627 164
No Yes Helobdella robusta   407 130
No Yes Capitella sp. I   916 309
No Yes Danaus plexippus OGS1.0 Monarch butterfly 197 52
No Yes Heliconius melpomene Postman butterfly 184 46
No Yes Bombyx mori Domestic silkworm 149 65
No Yes Nasonia vitripennis Jewel wasp 168 39
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 745 159
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 213 49
No Yes Linepithema humile v1.1 Argentine ant 160 66
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 182 59
No Yes Solenopsis invicta v.2.2.3 Red fire ant 111 54
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 220 46
No Yes Atta cephalotes v1.1   189 65
No Yes Camponotus floridanus v3.3 Florida carpenter ant 206 46
No Yes Lucilia cuprina Australian sheep blowfly 189 47
No Yes Drosophila grimshawi 1.3   235 55
No Yes Drosophila willistoni 1.3   203 47
No Yes Drosophila pseudoobscura 2.13   219 52
No Yes Drosophila persimilis 1.3   189 52
No Yes Drosophila suzukii   233 53
No Yes Drosophila yakuba 1.3   214 47
No Yes Drosophila simulans 1.3   145 43
No Yes Drosophila sechellia 1.3   187 41
No Yes Drosophila melanogaster 76_5 Fruit fly 696 152
No Yes Drosophila erecta 1.3   215 44
No Yes Drosophila ananassae 1.3   210 48
No Yes Drosophila virilis 1.2   216 49
No Yes Drosophila mojavensis 1.3   212 46
No Yes Megaselia scalaris 22   77 32
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 222 54
No Yes Culex pipiens quinquefasciatus Southern house mosquito 204 55
No Yes Anopheles darlingi 22 American malaria mosquito 125 29
No Yes Anopheles gambiae 49_3j African malaria mosquito 196 51
No Yes Tribolium castaneum 3.0 Red flour beetle 229 58
No Yes Pediculus humanus corporis (Early assembly) Human body louse 220 55
No Yes Acyrthosiphon pisum Pea aphid 185 35
No Yes Rhodnius prolixus 22   183 44
No Yes Daphnia pulex Common water flea 256 74
No Yes Strigamia maritima 22   230 60
No Yes Sarcoptes scabiei   166 48
No Yes Tetranychus urticae Two-spotted spider mite 224 64
No Yes Ixodes scapularis (Preliminary) Black-legged tick 156 55
No Yes Pristionchus pacificus   229 96
No Yes Meloidogyne incognita Southern root-knot nematode 119 42
No Yes Meloidogyne hapla   76 37
No Yes Onchocerca volvulus 22   185 53
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 433 107
No Yes Caenorhabditis japonica   193 64
No Yes Caenorhabditis brenneri   302 105
No Yes Caenorhabditis remanei   276 100
No Yes Caenorhabditis elegans 76_235 Roundworm 528 152
No Yes Caenorhabditis briggsae 2   242 82
No Yes Trichinella spiralis 22   313 92
No Yes Hymenolepis microstoma   122 36
No Yes Echinococcus multilocularis   133 38
No Yes Echinococcus granulosus   126 38
No Yes Taenia solium Pork tapeworm 127 41
No Yes Schistosoma mansoni   123 45
No Yes Mnemiopsis leidyi Sea walnut 178 50
No Yes Thelohanellus kitauei   26 25
No Yes Acropora digitifera v1.0   831 347
No Yes Nematostella vectensis 1.0 Starlet sea anemone 1039 372
No Yes Hydra vulgaris   350 115
No Yes Amphimedon queenslandica   433 151
No Yes Trichoplax adhaerens   574 125
No Yes Proterospongia sp. ATCC 50818   129 59
No Yes Monosiga brevicollis   53 30
No Yes Sphaeroforma arctica JP610   120 34
No Yes Capsaspora owczarzaki ATCC 30864   28 22
No Yes Amorphotheca resinae v1.0 Creosote fungus 1 1
No Yes Didymella exigua CBS 183.55 v1.0   1 1
No Yes Trichophyton verrucosum HKI 0517   1 1
No Yes Arthroderma benhamiae CBS 112371   1 1
No Yes Trichophyton tonsurans CBS 112818   1 1
No Yes Trichophyton rubrum CBS 118892   1 1
No Yes Penicillium chrysogenum Wisconsin 54-1255   1 1
No Yes Penicillium chrysogenum v1.0   1 1
No Yes Aspergillus terreus NIH2624   1 1
No Yes Aspergillus flavus NRRL3357   1 1
No Yes Yarrowia lipolytica CLIB122   1 1
No Yes Spizellomyces punctatus DAOM BR117   1 1
No Yes Dictyostelium discoideum   19 9
No Yes Dictyostelium purpureum   9 6
No Yes Pinus taeda Loblolly pine 1 1
No Yes Picea abies Norway spruce 1 1
No Yes Eucalyptus grandis v201 Rose gum 17 17
No Yes Theobroma cacao B97-61/B2 v1 Cacao 6 6
No Yes Gossypium raimondii v221   17 17
No Yes Citrus clementina v165   4 4
No Yes Citrus sinensis v154 Sweet orange 10 10
No Yes Thellungiella halophila v173   3 3
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 11 11
No Yes Capsella rubella v183   6 6
No Yes Arabidopsis lyrata Lyrate rockcress 4 4
No Yes Arabidopsis thaliana 10 Thale cress 5 5
No Yes Carica papaya Papaya 4 4
No Yes Medicago truncatula Barrel medic 18 18
No Yes Phaseolus vulgaris v186 French bean 8 8
No Yes Glycine max v109 Soybean 12 12
No Yes Cucumis sativus v122 Cucumber 6 5
No Yes Fragaria vesca Wild strawberry 15 13
No Yes Malus domestica v196 Apple 25 25
No Yes Prunus persica v139 Peach 11 11
No Yes Linum usitatissimum v200 Flax 1 1
No Yes Populus trichocarpa v156 Black cottonwood 10 10
No Yes Vitis vinifera Wine grape 19 12
No Yes Mimulus guttatus v140 Spotted monkey flower 2 2
No Yes Solanum lycopersicum v.2.3 Tomato 6 6
No Yes Solanum tuberosum Potato 20 20
No Yes Actinidia chinensis Hongyang   5 5
No Yes Aquilegia coerulea v195   14 14
No Yes Triticum urartu 22   42 42
No Yes Triticum aestivum 22 Bread wheat 122 122
No Yes Aegilops tauschii 22   64 64
No Yes Brachypodium distachyon Stiff brome 26 25
No Yes Oryza barthii 22 African wild rice 59 49
No Yes Oryza meridionalis 22   53 44
No Yes Oryza glumaepatula 22   66 64
No Yes Oryza glaberrima African rice 31 31
No Yes Oryza punctata 22   44 41
No Yes Oryza nivara 22   56 52
No Yes Oryza brachyantha 22 Malo sina 38 38
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 50 49
No Yes Oryza sativa v193 Rice 51 50
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 16 16
No Yes Panicum virgatum v202 Switchgrass 77 76
No Yes Setaria italica v164 Foxtail millet 40 40
No Yes Zea mays subsp. mays Maize 18 17
No Yes Zea mays v181 Maize 20 19
No Yes Sorghum bicolor Sorghum 26 26
No Yes Musa balbisiana Balbis banana 14 13
No Yes Musa acuminata 22 Wild Malaysian banana 29 26
No Yes Amborella trichopoda 22   4 4
No Yes Physcomitrella patens   2 2
No Yes Coccomyxa subellipsoidea sp. C-169 v2   4 4
No Yes Asterochloris sp. Cgr/DA1pho v1.0   2 2
No Yes Chlorella variabilis sp. NC64A   7 6
No Yes Chlorella vulgaris   5 5
No Yes Volvox carteri f. nagariensis   2 2
No Yes Volvox carteri v199   1 1
No Yes Chlamydomonas reinhardtii 4.0   5 5
No Yes Ostreococcus lucimarinus CCE9901   4 4
No Yes Ostreococcus tauri   2 2
No Yes Bathycoccus prasinos   4 4
No Yes Micromonas sp. RCC299   3 2
No Yes Micromonas pusilla CCMP1545 v3.0   1 1
No Yes Thecamonas trahens ATCC 50062   1 1
No Yes Bigelowiella natans CCMP2755 22   18 12
No Yes Giardia lamblia 2.3   26 14
No Yes Cyanophora paradoxa   4 4
No Yes Ectocarpus siliculosus   10 9
No Yes Albugo laibachii 22   3 3
No Yes Pythium iwayamai DAOM BR242034 22   4 4
No Yes Pythium arrhenomanes ATCC 12531 22   7 6
No Yes Pythium ultimum v1.7-2   2 2
No Yes Pythium aphanidermatum DAOM BR444 22   5 4
No Yes Pythium irregulare DAOM BR486 22   2 2
No Yes Pythium vexans DAOM BR484 22   1 1
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 3 3
No Yes Phaeodactylum tricornutumCCAP 1055/1   6 4
No Yes Fragilariopsis cylindrus   14 10
No Yes Thalassiosira pseudonana CCMP1335   6 4
No Yes Perkinsus marinus ATCC 50983   3 3
No Yes Paramecium tetraurelia   10 10
No Yes Tetrahymena thermophila SB210 1   4 4
No Yes Ichthyophthirius multifiliis strain G5   1 1
No Yes Cryptosporidium hominis   7 6
No Yes Cryptosporidium muris   13 7
No Yes Cryptosporidium parvum Iowa II   12 7
No Yes Neospora caninum   12 7
No Yes Toxoplasma gondii VEG   12 6
No Yes Toxoplasma gondii ME49   14 8
No Yes Toxoplasma gondii GT1   8 5
No Yes Babesia bovis T2Bo   4 2
No Yes Theileria parva   1 1
No Yes Plasmodium falciparum 3D7   10 7
No Yes Plasmodium vivax SaI-1 7.0   12 8
No Yes Plasmodium knowlesi strain H   13 9
No Yes Plasmodium yoelii ssp. yoelii 1   8 5
No Yes Plasmodium chabaudi   9 6
No Yes Plasmodium berghei ANKA   10 6
No Yes Symbiodinium minutum clade B1 v1.2   10 7
No Yes Naegleria gruberi   15 13
No Yes Guillardia theta CCMP2712 v1.0   24 18
No Yes Emiliania huxleyi CCMP1516   3 3
No Yes Haliscomenobacter hydrossis DSM 1100   1 1
No Yes Odoribacter splanchnicus DSM 20712   1 1
No Yes Haliangium ochraceum DSM 14365   1 1
No Yes Stigmatella aurantiaca DW4/3-1   1 1
No Yes Myxococcus xanthus DK 1622   1 1
No Yes Myxococcus fulvus HW-1   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 774 252
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 393 99
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 218 56
No Yes Ascaris suum Victoria/Ghent Pig roundworm 227 76
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 360 114
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 6 6
No Yes Hordeum vulgare 22 Domesticated barley 56 56
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 42 42
No Yes Neospora caninum Nc-Liverpool 6.2   12 7
No Yes Plasmodium falciparum HB3   9 6
No Yes Plasmodium falciparum Dd2   6 4
No Yes Myxococcus stipitatus DSM 14675   2 2
No Yes Homo sapiens 75_37 (old version GRC) Human 1814 677
No Yes Homo sapiens (NCBI version) Human 877 288
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 556 169
No Yes Heliconius numata (Incomplete)   14 9
No Yes Loa loa v3.3 (Request) Eye worm 185 61
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 186 80
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 169 51
No Yes Picea sitchensis (Incomplete) Sitka spruce 1 1
No Yes Lotus japonicus (Early assembly)   3 3
No Yes Malus x domestica (Duplicate) Apple 25 25
No Yes Ricinus communis (Early assembly) Castor bean 5 5
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   4 4
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 6 6
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 6 6
No Yes Phoenix dactylifera (Early draft) Date palm 4 4
No Yes Homo sapiens 69_37 Human 710 195
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 517 157
No Yes Gorilla gorilla 69_3.1 Western gorilla 571 161
No Yes Pongo abelii 69_2 Sumatran orangutan 519 168
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 495 156
No Yes Macaca mulatta 69_1 Rhesus monkey 556 172
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 578 165
No Yes Otolemur garnettii 69_3 Small-eared galago 549 170
No Yes Microcebus murinus 69_1 Gray mouse lemur 455 139
No Yes Rattus norvegicus 69_3.4 Norway rat 574 173
No Yes Mus musculus 69_38 House mouse 554 169
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 513 143
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 502 156
No Yes Cavia porcellus 69_3 Domestic guinea pig 558 163
No Yes Oryctolagus cuniculus 69_2 Rabbit 463 150
No Yes Ochotona princeps 69 American pika 469 142
No Yes Tupaia belangeri 69 Northern tree shrew 407 132
No Yes Sus scrofa 69_10.2 Pig 467 164
No Yes Bos taurus 69_3.1 Cattle 558 165
No Yes Vicugna pacos 69_1 Alpaca 260 102
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 526 156
No Yes Mustela putorius furo 69_1.0 Domestic ferret 565 183
No Yes Ailuropoda melanoleuca 69_1 Giant panda 551 166
No Yes Canis familiaris 69_3.1 Dog 552 165
No Yes Felis catus 69 Domestic cat 380 133
No Yes Equus caballus 69_2 Horse 546 178
No Yes Myotis lucifugus 69_2.0 Little brown bat 472 160
No Yes Pteropus vampyrus 69_1 Large flying fox 525 162
No Yes Sorex araneus 69_1 European shrew 286 102
No Yes Erinaceus europaeus 69 Western European hedgehog 383 118
No Yes Procavia capensis 69_1 Cape rock hyrax 458 148
No Yes Loxodonta africana 69_3 African savanna elephant 526 165
No Yes Echinops telfairi 69 Small Madagascar hedgehog 391 135
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 322 125
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 267 97
No Yes Macropus eugenii 69_1.0 Tammar wallaby 454 139
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 491 158
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 567 166
No Yes Ornithorhynchus anatinus 69_5 Platypus 452 168
No Yes Petromyzon marinus 69_7.0 Sea lamprey 203 84
No Yes Meleagris gallopavo 69_2 Turkey 471 152
No Yes Gallus gallus 69_2 Chicken 516 150
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 494 162
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 497 161
No Yes Anolis carolinensis 69_2.0 Green anole 510 157
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 553 156
No Yes Latimeria chalumnae 69_1 Coelacanth 639 183
No Yes Gadus morhua 69_1 Atlantic cod 547 170
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 693 221
No Yes Takifugu rubripes 69_4 Torafugu 677 202
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 659 191
No Yes Oryzias latipes 69_1 Japanese medaka 656 187
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 627 196
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 749 202
No Yes Danio rerio 69_9 Zebrafish 769 240
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 523 112
No Yes Ciona intestinalis 69 Vase tunicate 408 143
No Yes Drosophila melanogaster 69_5 Fruit fly 218 50
No Yes Caenorhabditis elegans 69_215 Roundworm 241 74
No Yes Arabidopsis thaliana 10 Thale cress 5 5
No Yes 1_050719N (meta-genome)   1 1
No Yes 3_Below_base_of_euphotic (meta-genome)   2 1
No Yes 7_Oxygen_minimum_layer (meta-genome)   1 1
No Yes Activated sludge plasmid pool Morges-2009 (Newbler) (meta-genome)   1 1
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   1 1
No Yes Combined (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Endophytic microbiome from Rice (meta-genome)   2 2
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   2 2
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   2 1
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   2 1
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   2 2
No Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome)   1 1
No Yes NCBI 2017_08 genome   302166 90591
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes Protozoadb 2010_08 (Protozoadb)   242 149
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   13 7
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   6 3
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   6 3
No Yes STRING v9.0.5 (STRING)   25827 7909
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   1 1
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   2 1
No Yes Uniprot 2018_03 genome   214533 69342
No Yes Global Ocean Sampling Expedition (GOS)   425 226
No Yes NCBI viral sequences (Viral)   27 26
No Yes PDB chains (SCOP 1.75) (PDB)   117 88
No Yes Protein Data Bank (all PDB sequenc)   1179 857
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   2437 2434
No Yes TargetDB (Targets)   486 191
No Yes UniProt viral sequences (Viral)   82 69

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