SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.


EGF/Laminin superfamily domain assignments
in
Drosophila sechellia 1.3

Assignment details

(show help)


Drosophila sechellia 1.3 has 187 significant domains in 41 proteins.

     

Sequence ID   Evalue   Region   Family  
FBpp0191604   0.0000000000787   493-536   EGF-type module  
  0.000000000286   919-959   EGF-type module  
  0.000000000954   801-838   EGF-type module  
  0.00000000264   882-924   EGF-type module  
  0.000000858   690-726   EGF-type module  
  0.00000387   841-885   EGF-type module  
  0.00000553   354-399   EGF-type module  
  0.000254   475-497   EGF-type module  
  0.00461   770-805   EGF-type module  
FBpp0192699   0.0000000123   592-632   Integrin beta EGF-like domains  
  0.00204   638-680   Integrin beta EGF-like domains  
  0.0419   513-539   Integrin beta EGF-like domains  
FBpp0192836   0.000000000236   84-127   EGF-type module  
  0.0000000683   397-435   EGF-type module  
  0.00000135   135-169   EGF-type module  
  0.00000468   358-393   EGF-type module  
  0.0273   313-345   EGF-type module  
FBpp0192843   0.00000000231   1668-1725   EGF-type module  
  0.0000182   2083-2115   EGF-type module  
  0.00117   499-558   EGF-type module  
  0.00367   2029-2054   EGF-type module  
  0.00617   177-235   EGF-type module  
  0.00636   1146-1202   EGF-type module  
FBpp0193518   0.00000000218   320-377   Laminin-type module  
  0.0000000446   383-424   Laminin-type module  
FBpp0194412   0.0000000671   182-228   EGF-type module  
FBpp0195139   0.000000000391   123-166   EGF-type module  
  0.00000000524   236-277   EGF-type module  
  0.000000255   169-200   EGF-type module  
  0.000000438   203-243   EGF-type module  
  0.000000766   277-314   EGF-type module  
  0.000192   1128-1166   EGF-type module  
  0.00709   1095-1132   EGF-type module  
FBpp0195141   0.0000000457   817-854   EGF-type module  
  0.00000246   621-661   EGF-type module  
FBpp0195328   0.00000000112   524-572   Laminin-type module  
  0.00000000167   1900-1954   Laminin-type module  
  0.0000000053   1449-1499   Laminin-type module  
  0.0000000109   1850-1902   Laminin-type module  
  0.0000000614   1792-1844   Laminin-type module  
  0.000000117   478-526   Laminin-type module  
  0.000000363   1358-1406   Laminin-type module  
  0.000000502   715-765   Laminin-type module  
  0.000000698   615-662   Laminin-type module  
  0.00000156   1497-1545   Laminin-type module  
  0.00000279   1410-1446   Laminin-type module  
  0.00000331   256-313   Laminin-type module  
  0.00000363   1953-2002   Laminin-type module  
  0.00000558   316-375   Laminin-type module  
  0.0000128   431-480   Laminin-type module  
  0.0000134   2000-2049   Laminin-type module  
  0.0000279   386-433   Laminin-type module  
  0.0000335   660-712   Laminin-type module  
  0.000046   768-806   Laminin-type module  
  0.000112   1757-1794   Laminin-type module  
  0.000123   570-617   Laminin-type module  
  0.00128   2047-2094   Laminin-type module  
FBpp0195369   0.00000000174   557-594   EGF-type module  
FBpp0195423   0.0000000213   446-493   EGF-type module  
  0.000224   502-540   EGF-type module  
FBpp0195685   0.0000000305   401-433   EGF-type module  
  0.00000329   437-483   EGF-type module  
  0.000671   371-401   EGF-type module  
FBpp0196133   0.000000000649   363-404   EGF-type module  
  0.00000462   333-369   EGF-type module  
FBpp0196332   0.0000000000000126   948-1003   EGF-type module  
  0.00000000000132   747-795   EGF-type module  
  0.000244   258-308   EGF-type module  
FBpp0196993   0.00000000165   372-415   Laminin-type module  
  0.000000012   159-211   Laminin-type module  
  0.0000000181   457-503   Laminin-type module  
  0.0000000201   601-649   Laminin-type module  
  0.0000000977   977-1026   Laminin-type module  
  0.000000153   506-554   Laminin-type module  
  0.00000053   242-283   Laminin-type module  
  0.00000117   1033-1082   Laminin-type module  
  0.00000184   325-366   Laminin-type module  
  0.00000865   281-320   Laminin-type module  
  0.000809   1080-1121   Laminin-type module  
  0.00307   554-598   Laminin-type module  
  0.00474   647-699   Laminin-type module  
  0.0165   117-150   EGF-type module  
FBpp0198064   0.000000000117   830-878   Laminin-type module  
  0.000000000642   1036-1084   Laminin-type module  
  0.00000000103   1087-1137   Laminin-type module  
  0.00000000145   984-1031   Laminin-type module  
  0.00000000204   876-928   Laminin-type module  
  0.0000000117   348-413   Laminin-type module  
  0.0000000232   782-823   Laminin-type module  
  0.0000000893   522-560   Laminin-type module  
  0.00000018   281-350   Laminin-type module  
  0.00000184   938-986   Laminin-type module  
  0.00000184   435-473   Laminin-type module  
  0.00000335   1135-1182   Laminin-type module  
  0.0000159   471-513   Laminin-type module  
FBpp0198186   0.0000000167   1152-1200   Laminin-type module  
  0.0000012   1029-1064   EGF-type module  
  0.00000176   2146-2195   Laminin-type module  
  0.0000297   2199-2272   Laminin-type module  
  0.000159   1105-1152   Laminin-type module  
FBpp0198312   0.00000000822   945-985   EGF-type module  
  0.000000151   746-789   EGF-type module  
  0.00000339   899-939   EGF-type module  
  0.000477   707-746   EGF-type module  
FBpp0198475   0.0000000489   78-128   EGF-type module  
FBpp0198587   0.00000000379   1691-1730   EGF-type module  
FBpp0199021   0.000000000446   313-371   Laminin-type module  
  0.00000000247   369-425   Laminin-type module  
  0.000000232   432-472   Laminin-type module  
FBpp0199138   0.000000000399   346-390   EGF-type module  
  0.0000000013   1385-1424   EGF-type module  
  0.00000000762   1411-1457   EGF-type module  
  0.00000225   309-354   EGF-type module  
  0.000914   666-704   EGF-type module  
  0.0011   985-1041   EGF-type module  
FBpp0199561   0.000000107   2387-2431   EGF-type module  
  0.000000113   127-172   EGF-type module  
  0.000000357   2219-2257   EGF-type module  
  0.000000536   452-506   EGF-type module  
  0.00000163   406-446   EGF-type module  
  0.00000837   824-866   EGF-type module  
  0.0000207   1139-1181   EGF-type module  
  0.0000307   913-952   EGF-type module  
  0.0000352   1014-1062   EGF-type module  
  0.0000476   2744-2788   EGF-type module  
  0.000639   10579-10612   EGF-type module  
  0.000994   11067-11101   EGF-type module  
  0.00124   6127-6160   EGF-type module  
  0.0015   5079-5113   EGF-type module  
  0.00256   4870-4903   EGF-type module  
  0.00272   10185-10218   EGF-type module  
  0.00285   10079-10111   EGF-type module  
  0.00385   11720-11753   EGF-type module  
  0.00528   982-1026   EGF-type module  
  0.0068   4133-4169   EGF-type module  
  0.00789   11504-11537   EGF-type module  
  0.0132   12042-12073   EGF-type module  
  0.0163   7191-7224   EGF-type module  
  0.0183   5294-5327   EGF-type module  
  0.0194   12363-12395   EGF-type module  
  0.0208   8937-8969   EGF-type module  
  0.0215   4414-4447   EGF-type module  
  0.0295   4265-4298   EGF-type module  
  0.0305   6791-6823   EGF-type module  
  0.0341   12256-12284   EGF-type module  
  0.0345   5510-5542   EGF-type module  
  0.037   6054-6087   EGF-type module  
  0.0497   9757-9789   EGF-type module  
  0.0586   8617-8651   EGF-type module  
  0.0691   9544-9576   EGF-type module  
  0.0795   4977-5008   EGF-type module  
  0.0815   789-835   EGF-type module  
  0.0952   1568-1600   EGF-type module  
FBpp0199582   0.000000028   906-943   EGF-type module  
  0.00000237   866-904   EGF-type module  
  0.00495   845-869   EGF-type module  
FBpp0199809   0.0000032   131-179   EGF-type module  
  0.00000709   413-454   EGF-type module  
  0.016   744-780   EGF-type module  
FBpp0200741   0.00000000000531   1160-1202   EGF-type module  
  0.00000000000804   503-545   EGF-type module  
  0.0000000000607   806-849   EGF-type module  
  0.000000000163   465-507   EGF-type module  
  0.00000000304   1038-1075   EGF-type module  
  0.0000000248   157-193   EGF-type module  
  0.0000000282   1393-1430   EGF-type module  
  0.0000000368   426-464   EGF-type module  
  0.0000000464   308-347   EGF-type module  
  0.0000000865   1001-1042   EGF-type module  
  0.00000012   1076-1118   EGF-type module  
  0.000000138   1315-1352   EGF-type module  
  0.000000679   120-154   EGF-type module  
  0.000000893   388-430   EGF-type module  
  0.00000179   349-387   EGF-type module  
  0.0000196   1130-1164   EGF-type module  
  0.0000559   38-73   EGF-type module  
  0.0000838   74-117   EGF-type module  
  0.000194   1354-1392   EGF-type module  
  0.0323   547-575   EGF-type module  
FBpp0201233   0.0000000544   1417-1459   EGF-type module  
  0.000000647   1311-1348   EGF-type module  
  0.00000246   1347-1386   EGF-type module  
  0.00000602   1061-1105   EGF-type module  
  0.00000862   1389-1427   EGF-type module  
  0.0393   1044-1065   EGF-type module  
FBpp0201590   0.0000000000743   1090-1136   EGF-type module  
  0.0000000175   930-972   EGF-type module  
  0.0000722   1378-1419   EGF-type module  
FBpp0202421   0.00000819   952-987   EGF-type module  
FBpp0202493   0.00000838   4406-4448   EGF-type module  
  0.0000233   4371-4404   EGF-type module  
  0.0000285   4333-4370   EGF-type module  
  0.00022   4459-4497   EGF-type module  
  0.000363   2218-2266   EGF-type module  
  0.000493   4255-4301   EGF-type module  
  0.000503   4299-4335   EGF-type module  
  0.00148   4502-4536   EGF-type module  
  0.00313   1899-1951   EGF-type module  
  0.00524   3851-3887   EGF-type module  
  0.0123   2535-2583   EGF-type module  
  0.0898   4219-4253   EGF-type module  
FBpp0202707   0.000000000258   1482-1522   EGF-type module  
  0.00000226   2095-2135   Laminin-type module  
  0.0978   1970-2000   EGF-type module  
FBpp0204074   0.000000189   1182-1222   EGF-type module  
  0.0000239   1459-1502   EGF-type module  
  0.000106   1768-1805   EGF-type module  
FBpp0204708   0.0000428   1383-1421   EGF-type module  
FBpp0204863   0.000000921   590-627   Integrin beta EGF-like domains  
  0.00000753   527-555   Integrin beta EGF-like domains  
  0.00558   473-500   Integrin beta EGF-like domains  
FBpp0205795   0.0000000205   67-112   EGF-type module  
FBpp0206184   0.0000000000223   155-197   EGF-type module  
  0.00000000211   461-503   EGF-type module  
  0.0000000195   290-337   EGF-type module  
  0.0000000643   192-234   EGF-type module  
  0.000000119   425-459   EGF-type module  
  0.000115   324-374   EGF-type module  
  0.00375   247-273   EGF-type module  
  0.0375   371-411   EGF-type module  
FBpp0206643   0.0000000000363   847-893   Laminin-type module  
  0.000000000335   956-1006   Laminin-type module  
  0.00000000162   744-795   Laminin-type module  
  0.00000000204   299-361   Laminin-type module  
  0.00000000307   461-511   Laminin-type module  
  0.0000000614   902-953   Laminin-type module  
  0.00000262   414-463   Laminin-type module  
  0.0000105   799-849   Laminin-type module  
  0.0000148   359-406   Laminin-type module  
  0.000198   1004-1050   Laminin-type module  
  0.000271   706-746   EGF-type module  
FBpp0206911   0.000022   193-239   EGF-type module  
  0.000781   289-334   EGF-type module  
FBpp0208063   0.00000000000931   946-988   EGF-type module  
  0.0000000000135   831-874   EGF-type module  
  0.0000000000274   869-911   EGF-type module  
  0.000000000199   1939-1983   EGF-type module  
  0.000000000547   1978-2015   EGF-type module  
  0.00000000073   423-460   EGF-type module  
  0.00000000142   1048-1091   EGF-type module  
  0.00000000165   2096-2140   EGF-type module  
  0.0000000147   384-427   EGF-type module  
  0.0000000207   347-389   EGF-type module  
  0.0000000419   643-683   EGF-type module  
  0.0000000594   754-801   EGF-type module  
  0.0000000877   462-499   EGF-type module  
  0.000000116   792-829   EGF-type module  
  0.000000124   2019-2063   EGF-type module  
  0.000000151   907-949   EGF-type module  
  0.000000174   303-343   EGF-type module  
  0.000000438   265-301   EGF-type module  
  0.000000839   2059-2099   EGF-type module  
  0.00000219   1906-1944   EGF-type module  
  0.0000115   2135-2173   EGF-type module  
  0.0000153   2175-2217   EGF-type module  
  0.0000274   1086-1126   EGF-type module  
  0.000254   695-726   EGF-type module  
  0.000933   1028-1052   EGF-type module  
  0.0125   984-1004   EGF-type module  
FBpp0208098   0.0000000000051   1878-1923   EGF-type module  
  0.000000000011   1112-1155   EGF-type module  
  0.0000000000262   950-995   EGF-type module  
  0.0000000000586   2042-2086   EGF-type module  
FBpp0208392   0.0000000461   333-385   EGF-type module  
  0.00000031   292-336   EGF-type module  
  0.0000184   378-420   EGF-type module  
 
Weak hits:
FBpp0192750   0.00503   283-309   EGF-type module  
  0.00805   184-208   EGF-type module  
  0.0161   243-282   EGF-type module  
FBpp0192841   0.00281   1263-1299   EGF-type module  
FBpp0194030   0.000161   345-375   EGF-type module  
  0.00156   379-406   EGF-type module  
  0.00297   312-341   EGF-type module  
  0.00387   415-442   EGF-type module  
  0.0134   278-312   EGF-type module  
FBpp0195654   0.000486   96-130   EGF-type module  
FBpp0195656   0.0218   260-309   Laminin-type module  
  0.0285   393-440   Laminin-type module  
FBpp0197449   0.0151   172-198   EGF-type module  
FBpp0197813   0.0419   52-90   EGF-type module  
FBpp0199293   0.000259   569-611   EGF-type module  
FBpp0199851   0.000565   18-47   EGF-type module  
FBpp0201523   0.0205   18-52   EGF-type module  
FBpp0201753   0.0542   1271-1326   EGF-type module  
FBpp0202687   0.0258   842-880   EGF-type module  
FBpp0203030   0.0745   66-90   Follistatin (FS) module N-terminal domain, FS-N  
FBpp0203131   0.000239   51-87   EGF-type module  
FBpp0203571   0.000712   1255-1279   EGF-type module  
  0.00167   1224-1247   EGF-type module  
  0.00293   1188-1214   Integrin beta EGF-like domains  
  0.0105   1354-1380   Integrin beta EGF-like domains  
  0.0167   1159-1183   Integrin beta EGF-like domains  
  0.067   1324-1349   Integrin beta EGF-like domains  
FBpp0204488   0.0265   67-98   EGF-type module  
  0.0586   168-200   EGF-type module  
FBpp0207300   0.0698   156-173   EGF-type module  

Jump to [ Top of page · Assignment details · Add assignments from individual genomes ]


Add assignments from groups of genomes

View all assignments containing a EGF/Laminin domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]


Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   719145 719145
No Yes Homo sapiens 76_38 Human 1736 621
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 532 163
No Yes Gorilla gorilla 76_3.1 Western gorilla 876 233
No Yes Pongo abelii 76_2 Sumatran orangutan 539 174
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 555 171
No Yes Papio anubis 76 Olive baboon 634 191
No Yes Macaca mulatta 76_1 Rhesus monkey 925 318
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 1183 386
No Yes Otolemur garnettii 76_3 Small-eared galago 551 171
No Yes Microcebus murinus 76_1 Gray mouse lemur 455 139
No Yes Rattus norvegicus 76_5.0 Norway rat 613 207
No Yes Mus musculus 76_38 House mouse 1015 344
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 515 145
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 529 164
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 521 161
No Yes Cavia porcellus 76_3 Domestic guinea pig 580 173
No Yes Oryctolagus cuniculus 76_2 Rabbit 478 160
No Yes Ochotona princeps 76 American pika 469 142
No Yes Tupaia belangeri 76 Northern tree shrew 407 132
No Yes Sus scrofa 76_10.2 Pig 585 211
No Yes Bos taurus 76_3.1 Cattle 632 189
No Yes Ovis aries 76_3.1 Sheep 602 193
No Yes Vicugna pacos 76_1 Alpaca 260 102
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 526 156
No Yes Mustela putorius furo 76_1.0 Domestic ferret 583 186
No Yes Ailuropoda melanoleuca 76_1 Giant panda 634 192
No Yes Canis familiaris 76_3.1 Dog 761 226
No Yes Felis catus 76_6.2 Domestic cat 592 185
No Yes Equus caballus 76_2 Horse 806 230
No Yes Myotis lucifugus 76_2.0 Little brown bat 502 169
No Yes Pteropus vampyrus 76_1 Large flying fox 529 164
No Yes Sorex araneus 76_1 European shrew 286 102
No Yes Erinaceus europaeus 76 Western European hedgehog 383 118
No Yes Procavia capensis 76_1 Cape rock hyrax 460 149
No Yes Loxodonta africana 76_3 African savanna elephant 690 216
No Yes Echinops telfairi 76 Small Madagascar hedgehog 391 135
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 616 199
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 271 99
No Yes Macropus eugenii 76_1.0 Tammar wallaby 454 139
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 621 199
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 616 176
No Yes Ornithorhynchus anatinus 76_5 Platypus 511 184
No Yes Saccoglossus kowalevskii v3.0   3261 466
No Yes Petromyzon marinus 76_7.0 Sea lamprey 221 94
No Yes Meleagris gallopavo 76_2 Turkey 509 175
No Yes Gallus gallus 76_4 Chicken 523 155
No Yes Anas platyrhynchos 76_1.0 Mallard 519 172
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 513 170
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 533 157
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 592 196
No Yes Anolis carolinensis 76_2.0 Green anole 539 160
No Yes Xenopus laevis African clawed frog 514 207
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 694 186
No Yes Latimeria chalumnae 76_1 Coelacanth 738 218
No Yes Lepisosteus oculatus 76 Spotted gar 888 241
No Yes Gadus morhua 76_1 Atlantic cod 618 198
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 995 299
No Yes Takifugu rubripes 76_4 Torafugu 2323 723
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 771 242
No Yes Oryzias latipes 76_1 Japanese medaka 740 228
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 627 196
No Yes Poecilia formosa 76 Amazon molly 687 203
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 1051 282
No Yes Astyanax mexicanus 76 Mexican tetra 752 239
No Yes Danio rerio 76_9 Zebrafish 1139 389
No Yes Oikopleura dioica   459 149
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 1671 332
No Yes Ciona intestinalis 76 Vase tunicate 438 155
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 2661 612
No Yes Adineta vaga   1146 278
No Yes Octopus bimaculoides 280   748 217
No Yes Crassostrea gigas 22 Pacific oyster 874 287
No Yes Lottia gigantea Owl limpet 627 164
No Yes Helobdella robusta   407 130
No Yes Capitella sp. I   916 309
No Yes Danaus plexippus OGS1.0 Monarch butterfly 197 52
No Yes Heliconius melpomene Postman butterfly 184 46
No Yes Bombyx mori Domestic silkworm 149 65
No Yes Nasonia vitripennis Jewel wasp 168 39
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 745 159
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 213 49
No Yes Linepithema humile v1.1 Argentine ant 160 66
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 182 59
No Yes Solenopsis invicta v.2.2.3 Red fire ant 111 54
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 220 46
No Yes Atta cephalotes v1.1   189 65
No Yes Camponotus floridanus v3.3 Florida carpenter ant 206 46
No Yes Lucilia cuprina Australian sheep blowfly 189 47
No Yes Drosophila grimshawi 1.3   235 55
No Yes Drosophila willistoni 1.3   203 47
No Yes Drosophila pseudoobscura 2.13   219 52
No Yes Drosophila persimilis 1.3   189 52
No Yes Drosophila suzukii   233 53
No Yes Drosophila yakuba 1.3   214 47
No Yes Drosophila simulans 1.3   145 43
No Yes Drosophila sechellia 1.3   187 41
No Yes Drosophila melanogaster 76_5 Fruit fly 696 152
No Yes Drosophila erecta 1.3   215 44
No Yes Drosophila ananassae 1.3   210 48
No Yes Drosophila virilis 1.2   216 49
No Yes Drosophila mojavensis 1.3   212 46
No Yes Megaselia scalaris 22   77 32
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 222 54
No Yes Culex pipiens quinquefasciatus Southern house mosquito 204 55
No Yes Anopheles darlingi 22 American malaria mosquito 125 29
No Yes Anopheles gambiae 49_3j African malaria mosquito 196 51
No Yes Tribolium castaneum 3.0 Red flour beetle 229 58
No Yes Pediculus humanus corporis (Early assembly) Human body louse 220 55
No Yes Acyrthosiphon pisum Pea aphid 185 35
No Yes Rhodnius prolixus 22   183 44
No Yes Daphnia pulex Common water flea 256 74
No Yes Strigamia maritima 22   230 60
No Yes Sarcoptes scabiei   166 48
No Yes Tetranychus urticae Two-spotted spider mite 224 64
No Yes Ixodes scapularis (Preliminary) Black-legged tick 156 55
No Yes Pristionchus pacificus   229 96
No Yes Meloidogyne incognita Southern root-knot nematode 119 42
No Yes Meloidogyne hapla   76 37
No Yes Onchocerca volvulus 22   185 53
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 433 107
No Yes Caenorhabditis japonica   193 64
No Yes Caenorhabditis brenneri   302 105
No Yes Caenorhabditis remanei   276 100
No Yes Caenorhabditis elegans 76_235 Roundworm 528 152
No Yes Caenorhabditis briggsae 2   242 82
No Yes Trichinella spiralis 22   313 92
No Yes Hymenolepis microstoma   122 36
No Yes Echinococcus multilocularis   133 38
No Yes Echinococcus granulosus   126 38
No Yes Taenia solium Pork tapeworm 127 41
No Yes Schistosoma mansoni   123 45
No Yes Mnemiopsis leidyi Sea walnut 178 50
No Yes Thelohanellus kitauei   26 25
No Yes Acropora digitifera v1.0   831 347
No Yes Nematostella vectensis 1.0 Starlet sea anemone 1039 372
No Yes Hydra vulgaris   350 115
No Yes Amphimedon queenslandica   433 151
No Yes Trichoplax adhaerens   574 125
No Yes Proterospongia sp. ATCC 50818   129 59
No Yes Monosiga brevicollis   53 30
No Yes Sphaeroforma arctica JP610   120 34
No Yes Capsaspora owczarzaki ATCC 30864   28 22
No Yes Amorphotheca resinae v1.0 Creosote fungus 1 1
No Yes Didymella exigua CBS 183.55 v1.0   1 1
No Yes Trichophyton verrucosum HKI 0517   1 1
No Yes Arthroderma benhamiae CBS 112371   1 1
No Yes Trichophyton tonsurans CBS 112818   1 1
No Yes Trichophyton rubrum CBS 118892   1 1
No Yes Penicillium chrysogenum Wisconsin 54-1255   1 1
No Yes Penicillium chrysogenum v1.0   1 1
No Yes Aspergillus terreus NIH2624   1 1
No Yes Aspergillus flavus NRRL3357   1 1
No Yes Yarrowia lipolytica CLIB122   1 1
No Yes Spizellomyces punctatus DAOM BR117   1 1
No Yes Dictyostelium discoideum   19 9
No Yes Dictyostelium purpureum   9 6
No Yes Pinus taeda Loblolly pine 1 1
No Yes Picea abies Norway spruce 1 1
No Yes Eucalyptus grandis v201 Rose gum 17 17
No Yes Theobroma cacao B97-61/B2 v1 Cacao 6 6
No Yes Gossypium raimondii v221   17 17
No Yes Citrus clementina v165   4 4
No Yes Citrus sinensis v154 Sweet orange 10 10
No Yes Thellungiella halophila v173   3 3
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 11 11
No Yes Capsella rubella v183   6 6
No Yes Arabidopsis lyrata Lyrate rockcress 4 4
No Yes Arabidopsis thaliana 10 Thale cress 5 5
No Yes Carica papaya Papaya 4 4
No Yes Medicago truncatula Barrel medic 18 18
No Yes Phaseolus vulgaris v186 French bean 8 8
No Yes Glycine max v109 Soybean 12 12
No Yes Cucumis sativus v122 Cucumber 6 5
No Yes Fragaria vesca Wild strawberry 15 13
No Yes Malus domestica v196 Apple 25 25
No Yes Prunus persica v139 Peach 11 11
No Yes Linum usitatissimum v200 Flax 1 1
No Yes Populus trichocarpa v156 Black cottonwood 10 10
No Yes Vitis vinifera Wine grape 19 12
No Yes Mimulus guttatus v140 Spotted monkey flower 2 2
No Yes Solanum lycopersicum v.2.3 Tomato 6 6
No Yes Solanum tuberosum Potato 20 20
No Yes Actinidia chinensis Hongyang   5 5
No Yes Aquilegia coerulea v195   14 14
No Yes Triticum urartu 22   42 42
No Yes Triticum aestivum 22 Bread wheat 122 122
No Yes Aegilops tauschii 22   64 64
No Yes Brachypodium distachyon Stiff brome 26 25
No Yes Oryza barthii 22 African wild rice 59 49
No Yes Oryza meridionalis 22   53 44
No Yes Oryza glumaepatula 22   66 64
No Yes Oryza glaberrima African rice 31 31
No Yes Oryza punctata 22   44 41
No Yes Oryza nivara 22   56 52
No Yes Oryza brachyantha 22 Malo sina 38 38
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 50 49
No Yes Oryza sativa v193 Rice 51 50
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 16 16
No Yes Panicum virgatum v202 Switchgrass 77 76
No Yes Setaria italica v164 Foxtail millet 40 40
No Yes Zea mays subsp. mays Maize 18 17
No Yes Zea mays v181 Maize 20 19
No Yes Sorghum bicolor Sorghum 26 26
No Yes Musa balbisiana Balbis banana 14 13
No Yes Musa acuminata 22 Wild Malaysian banana 29 26
No Yes Amborella trichopoda 22   4 4
No Yes Physcomitrella patens   2 2
No Yes Coccomyxa subellipsoidea sp. C-169 v2   4 4
No Yes Asterochloris sp. Cgr/DA1pho v1.0   2 2
No Yes Chlorella variabilis sp. NC64A   7 6
No Yes Chlorella vulgaris   5 5
No Yes Volvox carteri f. nagariensis   2 2
No Yes Volvox carteri v199   1 1
No Yes Chlamydomonas reinhardtii 4.0   5 5
No Yes Ostreococcus lucimarinus CCE9901   4 4
No Yes Ostreococcus tauri   2 2
No Yes Bathycoccus prasinos   4 4
No Yes Micromonas sp. RCC299   3 2
No Yes Micromonas pusilla CCMP1545 v3.0   1 1
No Yes Thecamonas trahens ATCC 50062   1 1
No Yes Bigelowiella natans CCMP2755 22   18 12
No Yes Giardia lamblia 2.3   26 14
No Yes Cyanophora paradoxa   4 4
No Yes Ectocarpus siliculosus   10 9
No Yes Albugo laibachii 22   3 3
No Yes Pythium iwayamai DAOM BR242034 22   4 4
No Yes Pythium arrhenomanes ATCC 12531 22   7 6
No Yes Pythium ultimum v1.7-2   2 2
No Yes Pythium aphanidermatum DAOM BR444 22   5 4
No Yes Pythium irregulare DAOM BR486 22   2 2
No Yes Pythium vexans DAOM BR484 22   1 1
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 3 3
No Yes Phaeodactylum tricornutumCCAP 1055/1   6 4
No Yes Fragilariopsis cylindrus   14 10
No Yes Thalassiosira pseudonana CCMP1335   6 4
No Yes Perkinsus marinus ATCC 50983   3 3
No Yes Paramecium tetraurelia   10 10
No Yes Tetrahymena thermophila SB210 1   4 4
No Yes Ichthyophthirius multifiliis strain G5   1 1
No Yes Cryptosporidium hominis   7 6
No Yes Cryptosporidium muris   13 7
No Yes Cryptosporidium parvum Iowa II   12 7
No Yes Neospora caninum   12 7
No Yes Toxoplasma gondii VEG   12 6
No Yes Toxoplasma gondii ME49   14 8
No Yes Toxoplasma gondii GT1   8 5
No Yes Babesia bovis T2Bo   4 2
No Yes Theileria parva   1 1
No Yes Plasmodium falciparum 3D7   10 7
No Yes Plasmodium vivax SaI-1 7.0   12 8
No Yes Plasmodium knowlesi strain H   13 9
No Yes Plasmodium yoelii ssp. yoelii 1   8 5
No Yes Plasmodium chabaudi   9 6
No Yes Plasmodium berghei ANKA   10 6
No Yes Symbiodinium minutum clade B1 v1.2   10 7
No Yes Naegleria gruberi   15 13
No Yes Guillardia theta CCMP2712 v1.0   24 18
No Yes Emiliania huxleyi CCMP1516   3 3
No Yes Haliscomenobacter hydrossis DSM 1100   1 1
No Yes Odoribacter splanchnicus DSM 20712   1 1
No Yes Haliangium ochraceum DSM 14365   1 1
No Yes Stigmatella aurantiaca DW4/3-1   1 1
No Yes Myxococcus xanthus DK 1622   1 1
No Yes Myxococcus fulvus HW-1   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 774 252
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 393 99
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 218 56
No Yes Ascaris suum Victoria/Ghent Pig roundworm 227 76
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 360 114
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 6 6
No Yes Hordeum vulgare 22 Domesticated barley 56 56
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 42 42
No Yes Neospora caninum Nc-Liverpool 6.2   12 7
No Yes Plasmodium falciparum HB3   9 6
No Yes Plasmodium falciparum Dd2   6 4
No Yes Myxococcus stipitatus DSM 14675   2 2
No Yes Homo sapiens 75_37 (old version GRC) Human 1814 677
No Yes Homo sapiens (NCBI version) Human 877 288
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 556 169
No Yes Heliconius numata (Incomplete)   14 9
No Yes Loa loa v3.3 (Request) Eye worm 185 61
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 186 80
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 169 51
No Yes Picea sitchensis (Incomplete) Sitka spruce 1 1
No Yes Lotus japonicus (Early assembly)   3 3
No Yes Malus x domestica (Duplicate) Apple 25 25
No Yes Ricinus communis (Early assembly) Castor bean 5 5
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   4 4
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 6 6
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 6 6
No Yes Phoenix dactylifera (Early draft) Date palm 4 4
No Yes Homo sapiens 69_37 Human 710 195
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 517 157
No Yes Gorilla gorilla 69_3.1 Western gorilla 571 161
No Yes Pongo abelii 69_2 Sumatran orangutan 519 168
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 495 156
No Yes Macaca mulatta 69_1 Rhesus monkey 556 172
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 578 165
No Yes Otolemur garnettii 69_3 Small-eared galago 549 170
No Yes Microcebus murinus 69_1 Gray mouse lemur 455 139
No Yes Rattus norvegicus 69_3.4 Norway rat 574 173
No Yes Mus musculus 69_38 House mouse 554 169
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 513 143
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 502 156
No Yes Cavia porcellus 69_3 Domestic guinea pig 558 163
No Yes Oryctolagus cuniculus 69_2 Rabbit 463 150
No Yes Ochotona princeps 69 American pika 469 142
No Yes Tupaia belangeri 69 Northern tree shrew 407 132
No Yes Sus scrofa 69_10.2 Pig 467 164
No Yes Bos taurus 69_3.1 Cattle 558 165
No Yes Vicugna pacos 69_1 Alpaca 260 102
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 526 156
No Yes Mustela putorius furo 69_1.0 Domestic ferret 565 183
No Yes Ailuropoda melanoleuca 69_1 Giant panda 551 166
No Yes Canis familiaris 69_3.1 Dog 552 165
No Yes Felis catus 69 Domestic cat 380 133
No Yes Equus caballus 69_2 Horse 546 178
No Yes Myotis lucifugus 69_2.0 Little brown bat 472 160
No Yes Pteropus vampyrus 69_1 Large flying fox 525 162
No Yes Sorex araneus 69_1 European shrew 286 102
No Yes Erinaceus europaeus 69 Western European hedgehog 383 118
No Yes Procavia capensis 69_1 Cape rock hyrax 458 148
No Yes Loxodonta africana 69_3 African savanna elephant 526 165
No Yes Echinops telfairi 69 Small Madagascar hedgehog 391 135
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 322 125
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 267 97
No Yes Macropus eugenii 69_1.0 Tammar wallaby 454 139
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 491 158
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 567 166
No Yes Ornithorhynchus anatinus 69_5 Platypus 452 168
No Yes Petromyzon marinus 69_7.0 Sea lamprey 203 84
No Yes Meleagris gallopavo 69_2 Turkey 471 152
No Yes Gallus gallus 69_2 Chicken 516 150
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 494 162
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 497 161
No Yes Anolis carolinensis 69_2.0 Green anole 510 157
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 553 156
No Yes Latimeria chalumnae 69_1 Coelacanth 639 183
No Yes Gadus morhua 69_1 Atlantic cod 547 170
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 693 221
No Yes Takifugu rubripes 69_4 Torafugu 677 202
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 659 191
No Yes Oryzias latipes 69_1 Japanese medaka 656 187
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 627 196
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 749 202
No Yes Danio rerio 69_9 Zebrafish 769 240
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 523 112
No Yes Ciona intestinalis 69 Vase tunicate 408 143
No Yes Drosophila melanogaster 69_5 Fruit fly 218 50
No Yes Caenorhabditis elegans 69_215 Roundworm 241 74
No Yes Arabidopsis thaliana 10 Thale cress 5 5
No Yes 1_050719N (meta-genome)   1 1
No Yes 3_Below_base_of_euphotic (meta-genome)   2 1
No Yes 7_Oxygen_minimum_layer (meta-genome)   1 1
No Yes Activated sludge plasmid pool Morges-2009 (Newbler) (meta-genome)   1 1
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   1 1
No Yes Combined (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Endophytic microbiome from Rice (meta-genome)   2 2
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   2 2
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   2 1
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   2 1
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   2 2
No Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome)   1 1
No Yes NCBI 2017_08 genome   302166 90591
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes Protozoadb 2010_08 (Protozoadb)   242 149
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   13 7
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   6 3
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   6 3
No Yes STRING v9.0.5 (STRING)   25827 7909
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   1 1
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   2 1
No Yes Uniprot 2018_03 genome   214533 69342
No Yes Global Ocean Sampling Expedition (GOS)   425 226
No Yes NCBI viral sequences (Viral)   27 26
No Yes PDB chains (SCOP 1.75) (PDB)   117 88
No Yes Protein Data Bank (all PDB sequenc)   1179 857
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   2437 2434
No Yes TargetDB (Targets)   486 191
No Yes UniProt viral sequences (Viral)   82 69

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]