SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.


Variable surface antigen VlsE superfamily domain assignments
in
Borrelia duttonii Ly

Network of domain occurrence in all genomes


Assignment details

(show help)


Borrelia duttonii Ly has 68 significant domains in 68 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|203283924|ref|YP_002221657.1|   6.02e-66   39-339   Variable surface antigen VlsE  
gi|203283928|ref|YP_002221668.1|   2.22e-62   2-300   Variable surface antigen VlsE  
gi|203283929|ref|YP_002221669.1|   6.02e-67   33-341   Variable surface antigen VlsE  
gi|203283930|ref|YP_002221670.1|   9.81e-68   46-362   Variable surface antigen VlsE  
gi|203288644|ref|YP_002223550.1|   6.54e-64   58-366   Variable surface antigen VlsE  
gi|203288645|ref|YP_002223551.1|   1.96e-81   38-337   Variable surface antigen VlsE  
gi|203288646|ref|YP_002223552.1|   5.36e-68   37-337   Variable surface antigen VlsE  
gi|203288647|ref|YP_002223553.1|   4.32e-80   37-335   Variable surface antigen VlsE  
gi|203288648|ref|YP_002223554.1|   2.62e-68   64-373   Variable surface antigen VlsE  
gi|203288649|ref|YP_002223555.1|   2.09e-84   23-328   Variable surface antigen VlsE  
gi|203288652|ref|YP_002223558.1|   9.15e-81   39-350   Variable surface antigen VlsE  
gi|203288653|ref|YP_002223559.1|   1.02e-79   11-311   Variable surface antigen VlsE  
gi|203288654|ref|YP_002223560.1|   9.29e-62   2-299   Variable surface antigen VlsE  
gi|203288663|ref|YP_002223568.1|   7.45e-82   39-325   Variable surface antigen VlsE  
gi|203288664|ref|YP_002223569.1|   1.83e-82   37-339   Variable surface antigen VlsE  
gi|203288665|ref|YP_002223570.1|   1.7e-71   44-353   Variable surface antigen VlsE  
gi|203288666|ref|YP_002223571.1|   3.66e-76   29-337   Variable surface antigen VlsE  
gi|203288667|ref|YP_002223572.1|   3.4e-67   65-375   Variable surface antigen VlsE  
gi|203288678|ref|YP_002223583.1|   1.57e-63   25-313   Variable surface antigen VlsE  
gi|203288679|ref|YP_002223584.1|   1.15e-69   62-376   Variable surface antigen VlsE  
gi|203288683|ref|YP_002223587.1|   1.1e-68   56-371   Variable surface antigen VlsE  
gi|203288684|ref|YP_002223588.1|   4.18e-71   44-360   Variable surface antigen VlsE  
gi|203288685|ref|YP_002223589.1|   1.22e-68   44-353   Variable surface antigen VlsE  
gi|203288686|ref|YP_002223590.1|   3.01e-68   45-360   Variable surface antigen VlsE  
gi|203288696|ref|YP_002223600.1|   1.96e-82   72-371   Variable surface antigen VlsE  
gi|203288697|ref|YP_002223601.1|   5.49e-67   39-327   Variable surface antigen VlsE  
gi|203288700|ref|YP_002223604.1|   1.44e-59   38-346   Variable surface antigen VlsE  
gi|203288703|ref|YP_002223606.1|   2.62e-85   34-336   Variable surface antigen VlsE  
gi|203288704|ref|YP_002223607.1|   7.98e-86   20-325   Variable surface antigen VlsE  
gi|203288705|ref|YP_002223608.1|   9.68e-87   37-341   Variable surface antigen VlsE  
gi|203288706|ref|YP_002223609.1|   1.23e-40   110-405   Variable surface antigen VlsE  
gi|203288719|ref|YP_002223622.1|   2.48e-65   61-357   Variable surface antigen VlsE  
gi|203288723|ref|YP_002223626.1|   6.41e-65   40-350   Variable surface antigen VlsE  
gi|203288724|ref|YP_002223627.1|   8.63e-86   36-336   Variable surface antigen VlsE  
gi|203288725|ref|YP_002223628.1|   5.89e-67   38-340   Variable surface antigen VlsE  
gi|203288726|ref|YP_002223629.1|   2.62e-75   16-321   Variable surface antigen VlsE  
gi|203288727|ref|YP_002223630.1|   4.05e-66   23-319   Variable surface antigen VlsE  
gi|203288731|ref|YP_002223667.1|   1.83e-82   37-339   Variable surface antigen VlsE  
gi|203288732|ref|YP_002223668.1|   1.06e-66   24-322   Variable surface antigen VlsE  
gi|203288733|ref|YP_002223669.1|   1.83e-72   42-344   Variable surface antigen VlsE  
gi|203288745|ref|YP_002223681.1|   6.02e-70   46-361   Variable surface antigen VlsE  
gi|203288746|ref|YP_002223682.1|   1.96e-48   43-341   Variable surface antigen VlsE  
gi|203288747|ref|YP_002223683.1|   5.36e-66   42-359   Variable surface antigen VlsE  
gi|203288749|ref|YP_002223685.1|   1.7e-67   25-322   Variable surface antigen VlsE  
gi|203288750|ref|YP_002223686.1|   1.83e-82   37-339   Variable surface antigen VlsE  
gi|203288777|ref|YP_002223727.1|   1.19e-66   44-351   Variable surface antigen VlsE  
gi|203288786|ref|YP_002223736.1|   5.75e-86   20-323   Variable surface antigen VlsE  
gi|203288787|ref|YP_002223737.1|   9.42e-68   45-341   Variable surface antigen VlsE  
gi|203288789|ref|YP_002223739.1|   6.28e-71   25-322   Variable surface antigen VlsE  
gi|203288792|ref|YP_002223742.1|   2.75e-82   36-335   Variable surface antigen VlsE  
gi|203288793|ref|YP_002223743.1|   1.96e-57   77-331   Variable surface antigen VlsE  
gi|203288794|ref|YP_002223744.1|   3.14e-71   45-341   Variable surface antigen VlsE  
gi|203288817|ref|YP_002223766.1|   3.4e-75   39-344   Variable surface antigen VlsE  
gi|203288818|ref|YP_002223767.1|   3.14e-65   23-312   Variable surface antigen VlsE  
gi|203288826|ref|YP_002223793.1|   2.22e-45   148-428   Variable surface antigen VlsE  
gi|203288827|ref|YP_002223794.1|   4.05e-74   46-351   Variable surface antigen VlsE  
gi|203288829|ref|YP_002223796.1|   4.32e-50   24-322   Variable surface antigen VlsE  
gi|203288830|ref|YP_002223797.1|   3.66e-74   38-349   Variable surface antigen VlsE  
gi|203288831|ref|YP_002223798.1|   6.67e-75   37-347   Variable surface antigen VlsE  
gi|203288868|ref|YP_002223861.1|   5.1e-81   40-341   Variable surface antigen VlsE  
gi|203288883|ref|YP_002223876.1|   2.48e-65   61-357   Variable surface antigen VlsE  
gi|203288887|ref|YP_002223880.1|   6.41e-65   40-350   Variable surface antigen VlsE  
gi|203288890|ref|YP_002223885.1|   6.67e-71   44-357   Variable surface antigen VlsE  
gi|203288891|ref|YP_002223886.1|   1.96e-84   16-318   Variable surface antigen VlsE  
gi|203288892|ref|YP_002223887.1|   3.53e-63   43-338   Variable surface antigen VlsE  
gi|203288893|ref|YP_002223888.1|   9.55e-84   38-336   Variable surface antigen VlsE  
gi|203288895|ref|YP_002223890.1|   2.35e-85   31-334   Variable surface antigen VlsE  
gi|203288905|ref|YP_002223900.1|   1.31e-47   137-424   Variable surface antigen VlsE  

Jump to [ Top of page · Assignment details · Add assignments from individual genomes ]


Add assignments from groups of genomes

View all assignments containing a Variable surface antigen VlsE domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]


Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   5226 5226
No Yes Borrelia afzelii PKo   4 3
No Yes Borrelia burgdorferi B31   1 1
No Yes Borrelia recurrentis A1   18 17
No Yes Borrelia duttonii Ly   68 68
No Yes Borrelia crocidurae str. Achema   156 156
No Yes Borrelia hermsii DAH   18 18
No Yes Halalkalicoccus jeotgali B3   1 1
No Yes Lactococcus lactis subsp. lactis KLDS 4.0325   1 1
No Yes Lactococcus lactis subsp. lactis Il1403   1 1
No Yes Lactococcus lactis subsp. cremoris A76   1 1
No Yes Borrelia valaisiana VS116   5 3
No Yes Borrelia afzelii PKo   4 3
No Yes Borrelia burgdorferi JD1   2 2
No Yes NCBI 2017_08 genome   1425 1334
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes Sludge/Australian, Phrap Assembly (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   95 88
No Yes Uniprot 2018_03 genome   2971 2889
No Yes NCBI plasmid sequences (Plasmids)   429 338
No Yes NCBI viral sequences (Viral)   2 2
No Yes PDB chains (SCOP 1.75) (PDB)   1 1
No Yes Protein Data Bank (all PDB sequenc)   4 4
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   8 8
No Yes UniProt viral sequences (Viral)   1 1

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]