SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

  Home > Genomes > Gasterosteus aculeatus 69_1 > TSP-1 type 1 repeat domains


TSP-1 type 1 repeat superfamily domain assignments
in
Gasterosteus aculeatus 69_1

Assignment details

(show help)


Gasterosteus aculeatus 69_1 has 307 significant domains in 79 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSGACP00000000043   0.00000000000000497   505-561   TSP-1 type 1 repeat  
  0.00000000107   816-871   TSP-1 type 1 repeat  
ENSGACP00000000045   0.00000000000103   440-492   TSP-1 type 1 repeat  
  0.0000000000772   816-876   TSP-1 type 1 repeat  
  0.000000314   767-817   TSP-1 type 1 repeat  
ENSGACP00000000088   0.00000000000432   129-185   TSP-1 type 1 repeat  
  0.0000000000837   1214-1271   TSP-1 type 1 repeat  
  0.00000000034   559-623   TSP-1 type 1 repeat  
  0.00000000288   963-1022   TSP-1 type 1 repeat  
  0.0000000419   702-755   TSP-1 type 1 repeat  
  0.000000107   292-344   TSP-1 type 1 repeat  
  0.000000575   626-697   TSP-1 type 1 repeat  
  0.0000235   833-887   TSP-1 type 1 repeat  
  0.000034   1097-1145   TSP-1 type 1 repeat  
  0.0000706   1341-1405   TSP-1 type 1 repeat  
  0.0000863   1269-1320   TSP-1 type 1 repeat  
  0.000288   353-408   TSP-1 type 1 repeat  
  0.000811   1148-1209   TSP-1 type 1 repeat  
  0.00288   1021-1080   TSP-1 type 1 repeat  
  0.00497   762-832   TSP-1 type 1 repeat  
  0.00602   443-498   TSP-1 type 1 repeat  
  0.0392   57-127   TSP-1 type 1 repeat  
  0.0589   898-962   TSP-1 type 1 repeat  
ENSGACP00000000483   0.0000000000000471   87-137   TSP-1 type 1 repeat  
  0.00000000000034   273-327   TSP-1 type 1 repeat  
  0.000000000157   142-193   TSP-1 type 1 repeat  
  0.0000641   30-84   TSP-1 type 1 repeat  
ENSGACP00000001375   0.0000000000000127   2508-2565   TSP-1 type 1 repeat  
  0.0000000000000157   4173-4230   TSP-1 type 1 repeat  
  0.0000000000000249   2797-2854   TSP-1 type 1 repeat  
  0.00000000000017   3928-3980   TSP-1 type 1 repeat  
  0.00000000000131   3153-3210   TSP-1 type 1 repeat  
  0.00000000000327   3733-3784   TSP-1 type 1 repeat  
  0.00000000000772   3210-3267   TSP-1 type 1 repeat  
  0.0000000000112   2954-3012   TSP-1 type 1 repeat  
  0.0000000000353   2675-2724   TSP-1 type 1 repeat  
  0.000000000131   3867-3926   TSP-1 type 1 repeat  
  0.000000000209   3608-3652   TSP-1 type 1 repeat  
  0.000000000785   2732-2797   TSP-1 type 1 repeat  
  0.00000000126   2455-2504   TSP-1 type 1 repeat  
  0.00000000916   4080-4134   TSP-1 type 1 repeat  
  0.0000000157   3435-3484   TSP-1 type 1 repeat  
  0.0000000301   3365-3411   TSP-1 type 1 repeat  
  0.000000034   4684-4729   TSP-1 type 1 repeat  
  0.000000275   3018-3058   TSP-1 type 1 repeat  
  0.000000353   4533-4580   TSP-1 type 1 repeat  
  0.00000068   4236-4289   TSP-1 type 1 repeat  
  0.000000772   1901-1958   TSP-1 type 1 repeat  
  0.00000106   1691-1740   TSP-1 type 1 repeat  
  0.00000157   1740-1800   TSP-1 type 1 repeat  
  0.0000275   3806-3853   TSP-1 type 1 repeat  
  0.000209   4291-4341   TSP-1 type 1 repeat  
  0.0157   4452-4523   TSP-1 type 1 repeat  
ENSGACP00000003026   0.00000000000000759   508-559   TSP-1 type 1 repeat  
  0.00000000889   864-922   TSP-1 type 1 repeat  
  0.0000000432   802-860   TSP-1 type 1 repeat  
  0.00000124   922-966   TSP-1 type 1 repeat  
ENSGACP00000003494   2.88e-16   811-864   TSP-1 type 1 repeat  
  0.0000000000000051   755-806   TSP-1 type 1 repeat  
  0.00000000000000562   563-613   TSP-1 type 1 repeat  
  0.000000000275   617-669   TSP-1 type 1 repeat  
  0.00000111   506-560   TSP-1 type 1 repeat  
  0.0000116   867-911   TSP-1 type 1 repeat  
ENSGACP00000003516   5.75e-16   104-161   TSP-1 type 1 repeat  
  0.000000000183   51-100   TSP-1 type 1 repeat  
  0.000000458   1-40   TSP-1 type 1 repeat  
ENSGACP00000003645   0.00000157   77-124   TSP-1 type 1 repeat  
ENSGACP00000004185   0.0000000000000405   347-403   TSP-1 type 1 repeat  
  0.00000000000109   461-516   TSP-1 type 1 repeat  
  0.000000000128   409-457   TSP-1 type 1 repeat  
  0.000000000379   298-343   TSP-1 type 1 repeat  
  0.00000000249   211-258   TSP-1 type 1 repeat  
ENSGACP00000004389   0.00000000000288   561-617   TSP-1 type 1 repeat  
  0.0000000000068   670-725   TSP-1 type 1 repeat  
  0.0000000000262   620-670   TSP-1 type 1 repeat  
  0.000000000115   506-558   TSP-1 type 1 repeat  
  0.000000968   760-813   TSP-1 type 1 repeat  
  0.00000327   444-490   TSP-1 type 1 repeat  
ENSGACP00000004511   0.0000262   216-261   TSP-1 type 1 repeat  
ENSGACP00000005356   0.0000000000000785   558-615   TSP-1 type 1 repeat  
  0.0000000000249   1355-1414   TSP-1 type 1 repeat  
  0.0000000000654   1210-1269   TSP-1 type 1 repeat  
  0.00000000196   1079-1140   TSP-1 type 1 repeat  
  0.0000000109   1025-1083   TSP-1 type 1 repeat  
  0.0000000144   1161-1212   TSP-1 type 1 repeat  
  0.0000000144   1305-1358   TSP-1 type 1 repeat  
  0.0000000157   1469-1529   TSP-1 type 1 repeat  
  0.0000000275   964-1026   TSP-1 type 1 repeat  
  0.0000000327   1653-1703   TSP-1 type 1 repeat  
  0.000000235   1528-1587   TSP-1 type 1 repeat  
  0.000000562   1420-1473   TSP-1 type 1 repeat  
  0.00000105   1590-1651   TSP-1 type 1 repeat  
  0.0017   853-906   TSP-1 type 1 repeat  
  0.0262   904-966   TSP-1 type 1 repeat  
ENSGACP00000005553   0.0000000000314   107-155   TSP-1 type 1 repeat  
ENSGACP00000005948   0.0000000000000837   478-534   TSP-1 type 1 repeat  
  0.000000000366   1381-1441   TSP-1 type 1 repeat  
  0.0000000157   1227-1276   TSP-1 type 1 repeat  
  0.0000000693   887-935   TSP-1 type 1 repeat  
  0.000000249   1330-1384   TSP-1 type 1 repeat  
  0.00000235   816-882   TSP-1 type 1 repeat  
  0.00000249   765-821   TSP-1 type 1 repeat  
  0.00602   1271-1335   TSP-1 type 1 repeat  
ENSGACP00000005972   0.000000196   215-255   TSP-1 type 1 repeat  
ENSGACP00000006719   0.0000000000000222   245-299   TSP-1 type 1 repeat  
  0.00000000222   301-355   TSP-1 type 1 repeat  
ENSGACP00000007034   0.0000000000366   2-53   TSP-1 type 1 repeat  
  0.0000000000837   337-395   TSP-1 type 1 repeat  
  0.000000000222   276-332   TSP-1 type 1 repeat  
  0.00000000209   394-451   TSP-1 type 1 repeat  
  0.0000000222   457-510   TSP-1 type 1 repeat  
ENSGACP00000007135   7.46e-16   219-270   TSP-1 type 1 repeat  
  0.0000000288   273-327   TSP-1 type 1 repeat  
ENSGACP00000007144   0.000000262   204-245   TSP-1 type 1 repeat  
ENSGACP00000007152   0.00000262   103-155   TSP-1 type 1 repeat  
ENSGACP00000007626   3.92e-16   494-552   TSP-1 type 1 repeat  
  0.00000000000000432   440-495   TSP-1 type 1 repeat  
  0.000000000327   386-429   TSP-1 type 1 repeat  
ENSGACP00000007884   0.00000994   208-253   TSP-1 type 1 repeat  
ENSGACP00000007957   0.00000000000000301   416-471   TSP-1 type 1 repeat  
  0.000000000235   363-412   TSP-1 type 1 repeat  
ENSGACP00000007979   0.00000000000000458   340-396   TSP-1 type 1 repeat  
  0.000000000000536   396-451   TSP-1 type 1 repeat  
  0.00000000000615   294-336   TSP-1 type 1 repeat  
  0.000000000405   454-501   TSP-1 type 1 repeat  
ENSGACP00000008044   0.0000000654   196-250   TSP-1 type 1 repeat  
ENSGACP00000008055   0.00000119   235-280   TSP-1 type 1 repeat  
ENSGACP00000008480   0.0000419   202-246   TSP-1 type 1 repeat  
ENSGACP00000008677   0.0000000000000863   543-600   TSP-1 type 1 repeat  
  0.000000000222   948-1007   TSP-1 type 1 repeat  
  0.000000000706   1097-1152   TSP-1 type 1 repeat  
  0.00000000916   890-946   TSP-1 type 1 repeat  
  0.00000157   1013-1074   TSP-1 type 1 repeat  
  0.00484   838-886   TSP-1 type 1 repeat  
ENSGACP00000008869   0.00000916   224-267   TSP-1 type 1 repeat  
ENSGACP00000009160   0.0000327   192-235   TSP-1 type 1 repeat  
ENSGACP00000009161   0.000000000379   500-546   TSP-1 type 1 repeat  
  0.000000112   31-78   TSP-1 type 1 repeat  
ENSGACP00000009667   0.00000000000458   107-154   TSP-1 type 1 repeat  
  0.0000000000602   1191-1248   TSP-1 type 1 repeat  
  0.000000000471   938-986   TSP-1 type 1 repeat  
  0.00000000068   539-601   TSP-1 type 1 repeat  
  0.00000000837   272-329   TSP-1 type 1 repeat  
  0.00000314   1072-1123   TSP-1 type 1 repeat  
  0.00000327   677-730   TSP-1 type 1 repeat  
  0.0000034   1320-1375   TSP-1 type 1 repeat  
  0.0000353   996-1066   TSP-1 type 1 repeat  
  0.0000641   1247-1297   TSP-1 type 1 repeat  
  0.000288   337-417   TSP-1 type 1 repeat  
  0.000301   1127-1187   TSP-1 type 1 repeat  
  0.000314   605-672   TSP-1 type 1 repeat  
  0.00262   868-937   TSP-1 type 1 repeat  
  0.00301   421-482   TSP-1 type 1 repeat  
  0.0188   29-102   TSP-1 type 1 repeat  
  0.0262   810-862   TSP-1 type 1 repeat  
ENSGACP00000009680   0.000000000017   275-321   TSP-1 type 1 repeat  
  0.0000000000288   326-380   TSP-1 type 1 repeat  
  0.00000000111   379-435   TSP-1 type 1 repeat  
  0.00000000209   439-486   TSP-1 type 1 repeat  
ENSGACP00000009750   0.00000000000000654   4576-4634   TSP-1 type 1 repeat  
  0.0000000000000445   4690-4748   TSP-1 type 1 repeat  
  0.000000000000157   4748-4805   TSP-1 type 1 repeat  
  0.000000000000183   4633-4691   TSP-1 type 1 repeat  
  0.000000000000746   4521-4577   TSP-1 type 1 repeat  
  0.0000000000222   4807-4858   TSP-1 type 1 repeat  
ENSGACP00000010156   0.0000000000000693   519-574   TSP-1 type 1 repeat  
  0.00000000131   798-858   TSP-1 type 1 repeat  
  0.00000000157   854-918   TSP-1 type 1 repeat  
  0.0000000144   976-1027   TSP-1 type 1 repeat  
  0.000000209   923-976   TSP-1 type 1 repeat  
ENSGACP00000010332   0.0000000000000235   225-276   TSP-1 type 1 repeat  
  0.000000000366   279-333   TSP-1 type 1 repeat  
ENSGACP00000010458   0.00000000000000196   408-458   TSP-1 type 1 repeat  
  0.000000000262   354-403   TSP-1 type 1 repeat  
ENSGACP00000012159   0.0000000000772   24-78   TSP-1 type 1 repeat  
  0.000000000235   253-306   TSP-1 type 1 repeat  
  0.00000000562   310-365   TSP-1 type 1 repeat  
  0.00000000968   191-249   TSP-1 type 1 repeat  
ENSGACP00000012306   0.000000000000107   541-598   TSP-1 type 1 repeat  
  0.000000000011   1322-1381   TSP-1 type 1 repeat  
  0.000000000131   1130-1188   TSP-1 type 1 repeat  
  0.00000000288   1497-1557   TSP-1 type 1 repeat  
  0.00000000575   1183-1244   TSP-1 type 1 repeat  
  0.00000000589   1009-1063   TSP-1 type 1 repeat  
  0.0000000131   1272-1325   TSP-1 type 1 repeat  
  0.0000000144   1058-1119   TSP-1 type 1 repeat  
  0.0000000732   1386-1441   TSP-1 type 1 repeat  
  0.000000106   1560-1620   TSP-1 type 1 repeat  
  0.000000109   948-1009   TSP-1 type 1 repeat  
  0.000000811   1440-1497   TSP-1 type 1 repeat  
  0.00000157   833-889   TSP-1 type 1 repeat  
  0.00000235   1625-1677   TSP-1 type 1 repeat  
  0.0116   896-949   TSP-1 type 1 repeat  
ENSGACP00000015516   0.0000000000144   880-932   TSP-1 type 1 repeat  
  0.0000000000968   4-42   TSP-1 type 1 repeat  
  0.000000000667   641-699   TSP-1 type 1 repeat  
  0.00000000128   699-756   TSP-1 type 1 repeat  
  0.00000000602   818-877   TSP-1 type 1 repeat  
  0.0000000157   580-639   TSP-1 type 1 repeat  
  0.0000000732   760-815   TSP-1 type 1 repeat  
ENSGACP00000015933   0.0000000000000732   555-605   TSP-1 type 1 repeat  
ENSGACP00000016020   0.00000000000000157   299-355   TSP-1 type 1 repeat  
  0.000000000916   984-1048   TSP-1 type 1 repeat  
  0.0000000589   661-726   TSP-1 type 1 repeat  
  0.00000484   937-990   TSP-1 type 1 repeat  
  0.0000051   869-930   TSP-1 type 1 repeat  
  0.0000419   729-786   TSP-1 type 1 repeat  
  0.000144   812-870   TSP-1 type 1 repeat  
  0.000196   617-655   TSP-1 type 1 repeat  
ENSGACP00000016575   0.0000000000000497   505-555   TSP-1 type 1 repeat  
  0.0000000000968   928-984   TSP-1 type 1 repeat  
  0.00000000085   820-877   TSP-1 type 1 repeat  
  0.0000000034   756-817   TSP-1 type 1 repeat  
  0.0000000288   879-923   TSP-1 type 1 repeat  
ENSGACP00000017015   0.000000196   88-144   TSP-1 type 1 repeat  
  0.0000183   240-302   TSP-1 type 1 repeat  
  0.00157   152-226   TSP-1 type 1 repeat  
  0.00432   52-89   TSP-1 type 1 repeat  
ENSGACP00000017238   0.00000034   93-151   TSP-1 type 1 repeat  
ENSGACP00000018774   0.00000000000000562   69-125   TSP-1 type 1 repeat  
  0.000000000000575   185-234   TSP-1 type 1 repeat  
  0.0000000000209   131-179   TSP-1 type 1 repeat  
  0.000000000196   23-66   TSP-1 type 1 repeat  
ENSGACP00000018936   0.00000000000000981   527-583   TSP-1 type 1 repeat  
  0.0000000000759   1073-1123   TSP-1 type 1 repeat  
  0.000000000667   859-925   TSP-1 type 1 repeat  
  0.00000000112   928-986   TSP-1 type 1 repeat  
  0.0000222   993-1053   TSP-1 type 1 repeat  
  0.0235   816-864   TSP-1 type 1 repeat  
ENSGACP00000018969   0.000000000126   643-702   TSP-1 type 1 repeat  
  0.00000000127   509-565   TSP-1 type 1 repeat  
  0.0000000109   13-61   TSP-1 type 1 repeat  
  0.0000000301   356-418   TSP-1 type 1 repeat  
  0.00000196   418-471   TSP-1 type 1 repeat  
  0.00000196   584-640   TSP-1 type 1 repeat  
  0.00000549   286-338   TSP-1 type 1 repeat  
ENSGACP00000018971   0.0000000068   497-561   TSP-1 type 1 repeat  
  0.00000196   622-676   TSP-1 type 1 repeat  
  0.0000196   445-502   TSP-1 type 1 repeat  
  0.00034   561-618   TSP-1 type 1 repeat  
ENSGACP00000019109   0.0000000000000196   507-557   TSP-1 type 1 repeat  
  0.0000000458   925-972   TSP-1 type 1 repeat  
  0.000000131   802-861   TSP-1 type 1 repeat  
  0.000000392   856-923   TSP-1 type 1 repeat  
ENSGACP00000019284   0.000000000523   803-864   TSP-1 type 1 repeat  
  0.0000000654   746-808   TSP-1 type 1 repeat  
  0.0000000746   580-646   TSP-1 type 1 repeat  
  0.000000523   2-30   TSP-1 type 1 repeat  
  0.000000863   648-698   TSP-1 type 1 repeat  
  0.0000589   524-583   TSP-1 type 1 repeat  
ENSGACP00000019291   0.000000000575   665-722   TSP-1 type 1 repeat  
  0.000000000824   723-779   TSP-1 type 1 repeat  
  0.00000000111   841-898   TSP-1 type 1 repeat  
  0.0000000183   52-84   TSP-1 type 1 repeat  
  0.0000000746   901-953   TSP-1 type 1 repeat  
  0.000000196   606-662   TSP-1 type 1 repeat  
  0.00000458   783-836   TSP-1 type 1 repeat  
ENSGACP00000019410   0.00000000183   846-901   TSP-1 type 1 repeat  
  0.00000000235   611-679   TSP-1 type 1 repeat  
  0.0000000115   734-788   TSP-1 type 1 repeat  
  0.0000000419   50-107   TSP-1 type 1 repeat  
  0.00017   789-848   TSP-1 type 1 repeat  
  0.00157   558-616   TSP-1 type 1 repeat  
  0.00196   681-731   TSP-1 type 1 repeat  
ENSGACP00000019514   0.00000000000235   210-262   TSP-1 type 1 repeat  
  0.00000000017   69-116   TSP-1 type 1 repeat  
  0.0000000102   145-204   TSP-1 type 1 repeat  
  0.00000112   266-328   TSP-1 type 1 repeat  
  0.00000114   336-368   TSP-1 type 1 repeat  
ENSGACP00000019545   0.0000000000000641   568-618   TSP-1 type 1 repeat  
  0.00000000000942   756-812   TSP-1 type 1 repeat  
  0.000000000458   622-674   TSP-1 type 1 repeat  
  0.00000000445   811-861   TSP-1 type 1 repeat  
  0.0000366   861-905   TSP-1 type 1 repeat  
  0.000706   512-565   TSP-1 type 1 repeat  
ENSGACP00000019882   0.000000000000157   516-570   TSP-1 type 1 repeat  
  0.000000105   825-875   TSP-1 type 1 repeat  
ENSGACP00000019886   0.0000000000000012   521-577   TSP-1 type 1 repeat  
  0.00000000124   836-889   TSP-1 type 1 repeat  
  0.0000000107   884-946   TSP-1 type 1 repeat  
ENSGACP00000020508   0.0000000432   101-149   TSP-1 type 1 repeat  
ENSGACP00000020731   0.000000000000471   561-616   TSP-1 type 1 repeat  
  0.00000000000929   907-963   TSP-1 type 1 repeat  
  0.00000000106   846-903   TSP-1 type 1 repeat  
  0.0000000235   1017-1072   TSP-1 type 1 repeat  
  0.00000392   967-1020   TSP-1 type 1 repeat  
ENSGACP00000020913   0.00000000000000615   201-252   TSP-1 type 1 repeat  
  0.000000000654   255-309   TSP-1 type 1 repeat  
ENSGACP00000020928   0.0000000536   2-49   TSP-1 type 1 repeat  
ENSGACP00000021100   0.0000000000101   663-718   TSP-1 type 1 repeat  
  0.0000000000114   554-608   TSP-1 type 1 repeat  
  0.0000000000144   608-663   TSP-1 type 1 repeat  
  0.000000000837   499-549   TSP-1 type 1 repeat  
  0.00000000144   752-806   TSP-1 type 1 repeat  
  0.00000051   441-487   TSP-1 type 1 repeat  
ENSGACP00000021249   0.000000000445   66-124   TSP-1 type 1 repeat  
  0.00000536   8-61   TSP-1 type 1 repeat  
  0.00484   123-160   TSP-1 type 1 repeat  
ENSGACP00000021553   0.000000000589   540-585   TSP-1 type 1 repeat  
  0.00000275   54-102   TSP-1 type 1 repeat  
ENSGACP00000021560   0.000000000589   540-585   TSP-1 type 1 repeat  
  0.00000275   55-103   TSP-1 type 1 repeat  
ENSGACP00000021571   0.0000000034   567-612   TSP-1 type 1 repeat  
  0.0000968   67-114   TSP-1 type 1 repeat  
ENSGACP00000021696   0.000000000144   290-339   TSP-1 type 1 repeat  
ENSGACP00000022277   0.000000000000131   220-271   TSP-1 type 1 repeat  
  0.00000000615   274-328   TSP-1 type 1 repeat  
ENSGACP00000022396   0.000000000000183   497-553   TSP-1 type 1 repeat  
  0.000000000785   1523-1584   TSP-1 type 1 repeat  
  0.000000034   1413-1476   TSP-1 type 1 repeat  
  0.0000000589   784-840   TSP-1 type 1 repeat  
  0.000000366   1368-1418   TSP-1 type 1 repeat  
  0.000000628   903-955   TSP-1 type 1 repeat  
  0.00000068   1471-1525   TSP-1 type 1 repeat  
  0.00000379   835-903   TSP-1 type 1 repeat  
ENSGACP00000022765   0.00000863   184-227   TSP-1 type 1 repeat  
ENSGACP00000023035   0.0000000000458   2-51   TSP-1 type 1 repeat  
ENSGACP00000023666   0.00000000746   25-80   TSP-1 type 1 repeat  
  0.0000000123   564-612   TSP-1 type 1 repeat  
  0.000000929   82-130   TSP-1 type 1 repeat  
ENSGACP00000023675   0.0000000051   494-541   TSP-1 type 1 repeat  
  0.0000000654   34-82   TSP-1 type 1 repeat  
ENSGACP00000023956   0.0000000262   276-325   TSP-1 type 1 repeat  
ENSGACP00000024246   0.000000000000301   208-259   TSP-1 type 1 repeat  
  0.00000000379   262-316   TSP-1 type 1 repeat  
ENSGACP00000025952   0.00000000116   30-84   TSP-1 type 1 repeat  
  0.00000000432   236-294   TSP-1 type 1 repeat  
  0.0000000068   175-234   TSP-1 type 1 repeat  
  0.00000000719   928-986   TSP-1 type 1 repeat  
  0.000000235   1048-1104   TSP-1 type 1 repeat  
  0.000000314   116-172   TSP-1 type 1 repeat  
  0.00000112   294-355   TSP-1 type 1 repeat  
  0.00497   981-1045   TSP-1 type 1 repeat  
ENSGACP00000026992   0.000000000000327   486-542   TSP-1 type 1 repeat  
  0.000000000432   866-927   TSP-1 type 1 repeat  
  0.000000379   818-867   TSP-1 type 1 repeat  
ENSGACP00000027650   0.0000000000000746   495-544   TSP-1 type 1 repeat  
  0.0000000000785   910-960   TSP-1 type 1 repeat  
  0.000000667   785-846   TSP-1 type 1 repeat  
  0.00000562   846-907   TSP-1 type 1 repeat  
 
Weak hits:
ENSGACP00000015142   0.00017   168-213   TSP-1 type 1 repeat  
ENSGACP00000018089   0.000942   151-212   TSP-1 type 1 repeat  
ENSGACP00000025576   0.000602   242-285   TSP-1 type 1 repeat  

Jump to [ Top of page · Assignment details · Add assignments from individual genomes ]

Add assignments from groups of genomes

View all assignments containing a TSP-1 type 1 repeat domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]

Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   291184 291184
No Yes Homo sapiens 76_38 Human 611 154
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 244 62
No Yes Gorilla gorilla 76_3.1 Western gorilla 316 84
No Yes Pongo abelii 76_2 Sumatran orangutan 227 60
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 247 61
No Yes Papio anubis 76 Olive baboon 275 67
No Yes Macaca mulatta 76_1 Rhesus monkey 347 97
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 590 144
No Yes Otolemur garnettii 76_3 Small-eared galago 254 67
No Yes Microcebus murinus 76_1 Gray mouse lemur 186 57
No Yes Rattus norvegicus 76_5.0 Norway rat 277 73
No Yes Mus musculus 76_38 House mouse 545 129
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 191 56
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 307 68
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 241 62
No Yes Cavia porcellus 76_3 Domestic guinea pig 276 65
No Yes Oryctolagus cuniculus 76_2 Rabbit 262 59
No Yes Ochotona princeps 76 American pika 204 59
No Yes Tupaia belangeri 76 Northern tree shrew 151 54
No Yes Sus scrofa 76_10.2 Pig 270 76
No Yes Bos taurus 76_3.1 Cattle 315 70
No Yes Ovis aries 76_3.1 Sheep 253 68
No Yes Vicugna pacos 76_1 Alpaca 123 34
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 223 61
No Yes Mustela putorius furo 76_1.0 Domestic ferret 276 63
No Yes Ailuropoda melanoleuca 76_1 Giant panda 308 77
No Yes Canis familiaris 76_3.1 Dog 369 81
No Yes Felis catus 76_6.2 Domestic cat 266 65
No Yes Equus caballus 76_2 Horse 351 75
No Yes Myotis lucifugus 76_2.0 Little brown bat 222 57
No Yes Pteropus vampyrus 76_1 Large flying fox 218 60
No Yes Sorex araneus 76_1 European shrew 127 40
No Yes Erinaceus europaeus 76 Western European hedgehog 145 47
No Yes Procavia capensis 76_1 Cape rock hyrax 192 62
No Yes Loxodonta africana 76_3 African savanna elephant 297 87
No Yes Echinops telfairi 76 Small Madagascar hedgehog 175 60
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 278 72
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 127 37
No Yes Macropus eugenii 76_1.0 Tammar wallaby 187 58
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 298 79
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 259 64
No Yes Ornithorhynchus anatinus 76_5 Platypus 237 77
No Yes Saccoglossus kowalevskii v3.0   431 141
No Yes Petromyzon marinus 76_7.0 Sea lamprey 192 50
No Yes Meleagris gallopavo 76_2 Turkey 261 75
No Yes Gallus gallus 76_4 Chicken 273 64
No Yes Anas platyrhynchos 76_1.0 Mallard 236 61
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 256 67
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 236 61
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 285 79
No Yes Anolis carolinensis 76_2.0 Green anole 285 67
No Yes Xenopus laevis African clawed frog 113 56
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 302 74
No Yes Latimeria chalumnae 76_1 Coelacanth 302 94
No Yes Lepisosteus oculatus 76 Spotted gar 422 94
No Yes Gadus morhua 76_1 Atlantic cod 275 80
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 317 90
No Yes Takifugu rubripes 76_4 Torafugu 1009 288
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 355 102
No Yes Oryzias latipes 76_1 Japanese medaka 332 91
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 311 81
No Yes Poecilia formosa 76 Amazon molly 317 83
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 460 112
No Yes Astyanax mexicanus 76 Mexican tetra 298 88
No Yes Danio rerio 76_9 Zebrafish 461 131
No Yes Oikopleura dioica   363 99
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 407 115
No Yes Ciona intestinalis 76 Vase tunicate 356 104
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 260 75
No Yes Adineta vaga   128 25
No Yes Octopus bimaculoides 280   209 67
No Yes Crassostrea gigas 22 Pacific oyster 404 118
No Yes Lottia gigantea Owl limpet 171 61
No Yes Helobdella robusta   108 29
No Yes Capitella sp. I   195 90
No Yes Danaus plexippus OGS1.0 Monarch butterfly 60 29
No Yes Heliconius melpomene Postman butterfly 45 23
No Yes Bombyx mori Domestic silkworm 37 19
No Yes Nasonia vitripennis Jewel wasp 56 16
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 183 61
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 62 19
No Yes Linepithema humile v1.1 Argentine ant 67 25
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 57 21
No Yes Solenopsis invicta v.2.2.3 Red fire ant 44 23
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 64 20
No Yes Atta cephalotes v1.1   64 24
No Yes Camponotus floridanus v3.3 Florida carpenter ant 67 18
No Yes Lucilia cuprina Australian sheep blowfly 53 15
No Yes Drosophila grimshawi 1.3   54 16
No Yes Drosophila willistoni 1.3   54 15
No Yes Drosophila pseudoobscura 2.13   52 15
No Yes Drosophila persimilis 1.3   48 15
No Yes Drosophila suzukii   50 14
No Yes Drosophila yakuba 1.3   51 16
No Yes Drosophila simulans 1.3   49 16
No Yes Drosophila sechellia 1.3   47 13
No Yes Drosophila melanogaster 76_5 Fruit fly 130 28
No Yes Drosophila erecta 1.3   52 16
No Yes Drosophila ananassae 1.3   55 17
No Yes Drosophila virilis 1.2   49 15
No Yes Drosophila mojavensis 1.3   49 14
No Yes Megaselia scalaris 22   14 7
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 48 13
No Yes Culex pipiens quinquefasciatus Southern house mosquito 56 20
No Yes Anopheles darlingi 22 American malaria mosquito 34 15
No Yes Anopheles gambiae 49_3j African malaria mosquito 42 14
No Yes Tribolium castaneum 3.0 Red flour beetle 56 15
No Yes Pediculus humanus corporis (Early assembly) Human body louse 52 16
No Yes Acyrthosiphon pisum Pea aphid 44 8
No Yes Rhodnius prolixus 22   40 14
No Yes Daphnia pulex Common water flea 62 15
No Yes Strigamia maritima 22   77 21
No Yes Sarcoptes scabiei   31 8
No Yes Tetranychus urticae Two-spotted spider mite 20 8
No Yes Ixodes scapularis (Preliminary) Black-legged tick 42 10
No Yes Pristionchus pacificus   52 21
No Yes Meloidogyne incognita Southern root-knot nematode 67 20
No Yes Meloidogyne hapla   40 10
No Yes Onchocerca volvulus 22   72 22
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 106 29
No Yes Caenorhabditis japonica   82 27
No Yes Caenorhabditis brenneri   129 38
No Yes Caenorhabditis remanei   96 33
No Yes Caenorhabditis elegans 76_235 Roundworm 198 54
No Yes Caenorhabditis briggsae 2   94 32
No Yes Trichinella spiralis 22   74 25
No Yes Hymenolepis microstoma   28 13
No Yes Echinococcus multilocularis   31 15
No Yes Echinococcus granulosus   29 14
No Yes Taenia solium Pork tapeworm 30 18
No Yes Schistosoma mansoni   31 15
No Yes Mnemiopsis leidyi Sea walnut 94 47
No Yes Thelohanellus kitauei   4 3
No Yes Acropora digitifera v1.0   291 127
No Yes Nematostella vectensis 1.0 Starlet sea anemone 295 125
No Yes Hydra vulgaris   345 115
No Yes Amphimedon queenslandica   44 18
No Yes Trichoplax adhaerens   35 9
No Yes Proterospongia sp. ATCC 50818   15 10
No Yes Monosiga brevicollis   6 3
No Yes Sphaeroforma arctica JP610   22 12
No Yes Capsaspora owczarzaki ATCC 30864   50 9
No Yes Dictyostelium discoideum   2 1
No Yes Dictyostelium purpureum   5 4
No Yes Selaginella moellendorffii   6 2
No Yes Manihot esculenta v147 Cassava 1 1
No Yes Aquilegia coerulea v195   3 3
No Yes Oryza barthii 22 African wild rice 1 1
No Yes Oryza meridionalis 22   2 2
No Yes Oryza glumaepatula 22   1 1
No Yes Oryza glaberrima African rice 1 1
No Yes Oryza punctata 22   1 1
No Yes Oryza nivara 22   1 1
No Yes Oryza brachyantha 22 Malo sina 1 1
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 2 2
No Yes Oryza sativa v193 Rice 2 2
No Yes Panicum virgatum v202 Switchgrass 1 1
No Yes Setaria italica v164 Foxtail millet 1 1
No Yes Zea mays subsp. mays Maize 3 3
No Yes Zea mays v181 Maize 3 3
No Yes Sorghum bicolor Sorghum 1 1
No Yes Musa balbisiana Balbis banana 1 1
No Yes Musa acuminata 22 Wild Malaysian banana 2 2
No Yes Amborella trichopoda 22   1 1
No Yes Physcomitrella patens   1 1
No Yes Coccomyxa subellipsoidea sp. C-169 v2   8 3
No Yes Asterochloris sp. Cgr/DA1pho v1.0   7 3
No Yes Chlorella variabilis sp. NC64A   10 3
No Yes Chlorella vulgaris   5 2
No Yes Ostreococcus sp. RCC809   8 5
No Yes Ostreococcus lucimarinus CCE9901   1 1
No Yes Ostreococcus tauri   2 2
No Yes Bathycoccus prasinos   10 4
No Yes Micromonas sp. RCC299   4 2
No Yes Micromonas pusilla CCMP1545 v3.0   8 4
No Yes Thecamonas trahens ATCC 50062   4 1
No Yes Bigelowiella natans CCMP2755 22   14 7
No Yes Ectocarpus siliculosus   1 1
No Yes Pythium iwayamai DAOM BR242034 22   31 4
No Yes Pythium arrhenomanes ATCC 12531 22   1 1
No Yes Pythium ultimum v1.7-2   46 5
No Yes Pythium aphanidermatum DAOM BR444 22   42 3
No Yes Pythium irregulare DAOM BR486 22   36 3
No Yes Pythium vexans DAOM BR484 22   28 1
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 40 3
No Yes Phytophthora sojae 1.1   79 7
No Yes Phytophthora infestans T30-4   25 2
No Yes Phytophthora capsici   24 1
No Yes Thalassiosira pseudonana CCMP1335   1 1
No Yes Perkinsus marinus ATCC 50983   2 2
No Yes Cryptosporidium hominis   17 7
No Yes Cryptosporidium muris   31 10
No Yes Cryptosporidium parvum Iowa II   30 10
No Yes Neospora caninum   30 8
No Yes Toxoplasma gondii VEG   24 6
No Yes Toxoplasma gondii ME49   24 6
No Yes Toxoplasma gondii GT1   25 6
No Yes Babesia bovis T2Bo   8 8
No Yes Theileria parva   4 4
No Yes Theileria annulata   4 4
No Yes Plasmodium falciparum 3D7   10 8
No Yes Plasmodium vivax SaI-1 7.0   11 9
No Yes Plasmodium knowlesi strain H   7 7
No Yes Plasmodium yoelii ssp. yoelii 1   10 7
No Yes Plasmodium chabaudi   9 6
No Yes Plasmodium berghei ANKA   10 7
No Yes Symbiodinium minutum clade B1 v1.2   473 75
No Yes Guillardia theta CCMP2712 v1.0   14 5
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'   1 1
No Yes Bdellovibrio bacteriovorus HD100   1 1
No Yes Desulfatibacillum alkenivorans AK-01   7 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 283 84
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 122 28
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 55 17
No Yes Ascaris suum Victoria/Ghent Pig roundworm 77 23
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 140 44
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 1 1
No Yes Neospora caninum Nc-Liverpool 6.2   30 8
No Yes Plasmodium falciparum HB3   10 8
No Yes Plasmodium falciparum Dd2   8 6
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'   1 1
No Yes Bdellovibrio exovorus JSS   5 3
No Yes Bdellovibrio bacteriovorus str. Tiberius   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 633 165
No Yes Homo sapiens (NCBI version) Human 341 81
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 265 63
No Yes Heliconius numata (Incomplete)   1 1
No Yes Loa loa v3.3 (Request) Eye worm 80 27
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 77 39
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 66 19
No Yes Homo sapiens 69_37 Human 272 67
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 233 59
No Yes Gorilla gorilla 69_3.1 Western gorilla 253 63
No Yes Pongo abelii 69_2 Sumatran orangutan 227 60
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 243 62
No Yes Macaca mulatta 69_1 Rhesus monkey 236 63
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 270 64
No Yes Otolemur garnettii 69_3 Small-eared galago 252 66
No Yes Microcebus murinus 69_1 Gray mouse lemur 186 57
No Yes Rattus norvegicus 69_3.4 Norway rat 243 58
No Yes Mus musculus 69_38 House mouse 286 64
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 191 56
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 244 62
No Yes Cavia porcellus 69_3 Domestic guinea pig 260 60
No Yes Oryctolagus cuniculus 69_2 Rabbit 257 57
No Yes Ochotona princeps 69 American pika 204 59
No Yes Tupaia belangeri 69 Northern tree shrew 151 54
No Yes Sus scrofa 69_10.2 Pig 213 64
No Yes Bos taurus 69_3.1 Cattle 275 62
No Yes Vicugna pacos 69_1 Alpaca 123 34
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 223 61
No Yes Mustela putorius furo 69_1.0 Domestic ferret 276 63
No Yes Ailuropoda melanoleuca 69_1 Giant panda 270 67
No Yes Canis familiaris 69_3.1 Dog 258 60
No Yes Felis catus 69 Domestic cat 155 52
No Yes Equus caballus 69_2 Horse 255 61
No Yes Myotis lucifugus 69_2.0 Little brown bat 218 56
No Yes Pteropus vampyrus 69_1 Large flying fox 218 60
No Yes Sorex araneus 69_1 European shrew 127 40
No Yes Erinaceus europaeus 69 Western European hedgehog 145 47
No Yes Procavia capensis 69_1 Cape rock hyrax 192 62
No Yes Loxodonta africana 69_3 African savanna elephant 221 64
No Yes Echinops telfairi 69 Small Madagascar hedgehog 175 60
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 159 52
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 127 37
No Yes Macropus eugenii 69_1.0 Tammar wallaby 187 58
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 244 64
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 252 61
No Yes Ornithorhynchus anatinus 69_5 Platypus 207 69
No Yes Petromyzon marinus 69_7.0 Sea lamprey 130 39
No Yes Meleagris gallopavo 69_2 Turkey 238 67
No Yes Gallus gallus 69_2 Chicken 240 63
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 253 65
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 243 64
No Yes Anolis carolinensis 69_2.0 Green anole 264 66
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 274 66
No Yes Latimeria chalumnae 69_1 Coelacanth 253 74
No Yes Gadus morhua 69_1 Atlantic cod 263 74
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 240 69
No Yes Takifugu rubripes 69_4 Torafugu 284 74
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 307 79
No Yes Oryzias latipes 69_1 Japanese medaka 267 69
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 311 81
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 330 79
No Yes Danio rerio 69_9 Zebrafish 332 90
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 200 56
No Yes Ciona intestinalis 69 Vase tunicate 333 99
No Yes Drosophila melanogaster 69_5 Fruit fly 52 15
No Yes Caenorhabditis elegans 69_215 Roundworm 102 34
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   2 2
No Yes Endophytic microbiome from Rice (meta-genome)   1 1
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes NCBI 2017_08 genome   129968 31969
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes Protozoadb 2010_08 (Protozoadb)   277 136
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   4 4
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   2 1
No Yes STRING v9.0.5 (STRING)   9521 2746
No Yes Uniprot 2018_03 genome   78679 23035
No Yes Global Ocean Sampling Expedition (GOS)   593 226
No Yes PDB chains (SCOP 1.75) (PDB)   2 1
No Yes Protein Data Bank (all PDB sequenc)   122 87
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   107 107
No Yes TargetDB (Targets)   310 101

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

Please send feedback, comments or questions to superfamily@cs.bris.ac.uk or use the feedback form.

© Copyright 2013 The SUPERFAMILY authors and Julian Gough.