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C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family domain assignments
in
Pseudogulbenkiania sp. NH8B

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Pseudogulbenkiania sp. NH8B has 2 significant domains in 2 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|347539233|ref|YP_004846658.1|   1.57e-124   0.0000000000109   136-559   1nir A:118-543  
gi|347539242|ref|YP_004846667.1|   2.75e-78   0.0001   102-282,318-506   1nir A:118-543  
 
Weak hits:
gi|347539236|ref|YP_004846661.1|   7.85e-78   0.0007   6-367   1nir A:118-543  
gi|347539418|ref|YP_004846843.1|   3.14e-55   0.016   41-317   1nir A:118-543  

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Select to display   Genome       Domains   Proteins
No Yes ALL   28324 28324
No Yes Anaerolinea thermophila UNI-1   1 1
No Yes Roseiflexus castenholzii DSM 13941   1 1
No Yes Oceanithermus profundus DSM 14977   1 1
No Yes Thermus scotoductus SA-01   1 1
No Yes Rhodothermus marinus DSM 4252   1 1
No Yes Sulfurihydrogenibium sp. YO3AOP1   1 1
No Yes Persephonella marina EX-H1   1 1
No Yes Hydrogenobaculum sp. Y04AAS1   1 1
No Yes Hydrogenobacter thermophilus TK-6   1 1
No Yes Candidatus Methylomirabilis oxyfera   1 1
No Yes Nitratifractor salsuginis DSM 16511   1 1
No Yes Sulfurimonas autotrophica DSM 16294   1 1
No Yes Sulfurimonas denitrificans DSM 1251   1 1
No Yes Nitratiruptor sp. SB155-2   1 1
No Yes Sulfurovum sp. NBC37-1   1 1
No Yes Dechloromonas aromatica RCB   3 3
No Yes Thauera sp. MZ1T   1 1
No Yes Azoarcus sp. KH32C   1 1
No Yes Aromatoleum aromaticum EbN1   1 1
No Yes Dechlorosoma suillum PS   2 2
No Yes Pseudogulbenkiania sp. NH8B   2 2
No Yes Candidatus Accumulibacter phosphatis clade IIA str. UW-1   1 1
No Yes Rubrivivax gelatinosus IL144   1 1
No Yes Leptothrix cholodnii SP-6   1 1
No Yes Ralstonia eutropha JMP134   2 2
No Yes Cupriavidus taiwanensis LMG 19424   2 2
No Yes Cupriavidus metallidurans CH34   2 2
No Yes Cupriavidus necator N-1   2 2
No Yes Ralstonia eutropha H16   2 2
No Yes Alicycliphilus denitrificans K601   2 2
No Yes Acidovorax ebreus TPSY   2 2
No Yes Acidovorax sp. JS42   2 2
No Yes Bordetella petrii DSM 12804   2 2
No Yes Thiobacillus denitrificans ATCC 25259   2 2
No Yes Sideroxydans lithotrophicus ES-1   1 1
No Yes Dinoroseobacter shibae DFL 12   2 2
No Yes Pseudovibrio sp. FO-BEG1   3 3
No Yes Ruegeria pomeroyi DSS-3   2 2
No Yes Roseobacter litoralis Och 149   2 2
No Yes Roseobacter denitrificans OCh 114   2 2
No Yes Paracoccus denitrificans PD1222   2 2
No Yes Magnetospirillum magneticum AMB-1   3 3
No Yes Polymorphum gilvum SL003B-26A1   2 2
No Yes Colwellia psychrerythraea 34H   2 2
No Yes Marinobacter hydrocarbonoclasticus ATCC 49840   2 2
No Yes Marinobacter aquaeolei VT8   2 2
No Yes Kangiella koreensis DSM 16069   1 1
No Yes Hahella chejuensis KCTC 2396   2 2
No Yes Methylomonas methanica MC09   1 1
No Yes gamma proteobacterium HdN1   2 2
No Yes Pseudomonas sp. TKP   2 2
No Yes Pseudomonas brassicacearum subsp. brassicacearum NFM421   2 2
No Yes Pseudomonas stutzeri A1501   2 2
No Yes Pseudomonas aeruginosa UCBPP-PA14   2 2
No Yes Natrinema sp. J7-2   2 2
No Yes Thermus oshimai JL-2   1 1
No Yes Thermus thermophilus JL-18   1 1
No Yes Thermus thermophilus SG0.5JP17-16   1 1
No Yes Hydrogenobacter thermophilus TK-6   1 1
No Yes Alicycliphilus denitrificans BC   2 2
No Yes Sulfuricella denitrificans skB26   3 3
No Yes Magnetospirillum gryphiswaldense MSR-1 v2   2 2
No Yes Bradyrhizobium oligotrophicum S58   2 2
No Yes Thioalkalivibrio nitratireducens DSM 14787   2 2
No Yes Pseudomonas denitrificans ATCC 13867   1 1
No Yes Pseudomonas stutzeri CCUG 29243   2 2
No Yes Pseudomonas stutzeri DSM 10701   2 2
No Yes Pseudomonas stutzeri DSM 4166   2 2
No Yes Pseudomonas stutzeri RCH2   2 2
No Yes Pseudomonas stutzeri ATCC 17588 = LMG 11199   2 2
No Yes Pseudomonas fluorescens F113   2 2
No Yes Pseudomonas aeruginosa SCV20265   2 2
No Yes Pseudomonas aeruginosa MTB-1   2 2
No Yes Pseudomonas aeruginosa LES431   2 2
No Yes Pseudomonas aeruginosa RP73   2 2
No Yes Pseudomonas aeruginosa B136-33   2 2
No Yes Pseudomonas aeruginosa PA1R   2 2
No Yes Pseudomonas aeruginosa PA1   2 2
No Yes Pseudomonas aeruginosa DK2   2 2
No Yes Pseudomonas aeruginosa NCGM2.S1   1 1
No Yes Pseudomonas aeruginosa M18   2 2
No Yes Pseudomonas aeruginosa LESB58   2 2
No Yes Pseudomonas aeruginosa PA7   2 2
No Yes Pseudomonas aeruginosa PAO1   2 2
No Yes Natrinema pellirubrum DSM 15624   2 2
No Yes Activated sludge plasmid pool Morges-2009 (Newbler) (meta-genome)   2 2
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   8 8
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)   1 1
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)   1 1
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #3 (meta-genome)   2 2
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   9 9
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   2 2
No Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   10 10
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome)   4 4
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   5 5
No Yes NCBI 2017_08 genome   5916 5916
No Yes Olavius algarvensis endosymbiont metagenome Gamma3 (meta-genome)   2 2
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   2 2
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   1 1
No Yes Sludge/Australian, Phrap Assembly (meta-genome)   8 8
No Yes Sludge/US, Jazz Assembly (meta-genome)   5 5
No Yes Sludge/US, Phrap Assembly (meta-genome)   10 10
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   9 9
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   2 2
No Yes STRING v9.0.5 (STRING)   60 60
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   9 9
No Yes Uniprot 2018_03 genome   21835 21835
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   1 1
No Yes Global Ocean Sampling Expedition (GOS)   3 3
No Yes NCBI plasmid sequences (Plasmids)   4 4
No Yes PDB chains (SCOP 1.75) (PDB)   7 7
No Yes Protein Data Bank (all PDB sequenc)   44 44
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   128 128

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