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  Home > Genomes > Gasterosteus aculeatus 76_1 > LDL receptor-like module domains


LDL receptor-like module superfamily domain assignments
in
Gasterosteus aculeatus 76_1

Assignment details

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Gasterosteus aculeatus 76_1 has 365 significant domains in 68 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSGACP00000000265   0.000000000126   1-35   LDL receptor-like module  
  0.000000000157   37-72   LDL receptor-like module  
  0.0000000028   80-120   LDL receptor-like module  
ENSGACP00000000338   0.000000000288   496-532   LDL receptor-like module  
  0.00000000223   459-494   LDL receptor-like module  
  0.00000000236   420-460   LDL receptor-like module  
  0.00000000301   539-585   LDL receptor-like module  
ENSGACP00000000464   0.00000017   249-284   LDL receptor-like module  
  0.000000628   214-247   LDL receptor-like module  
ENSGACP00000000469   0.000000196   264-299   LDL receptor-like module  
  0.000000262   231-262   LDL receptor-like module  
ENSGACP00000000775   0.000000000877   1334-1370   LDL receptor-like module  
  0.00000000101   1256-1296   LDL receptor-like module  
  0.000000034   1297-1333   LDL receptor-like module  
ENSGACP00000000777   0.000000000314   1327-1365   LDL receptor-like module  
  0.00000000101   1248-1288   LDL receptor-like module  
  0.000000034   1289-1324   LDL receptor-like module  
ENSGACP00000000806   0.0000000000576   824-865   LDL receptor-like module  
  0.000000000223   2661-2698   LDL receptor-like module  
  0.000000000262   865-907   LDL receptor-like module  
  0.000000000301   3325-3369   LDL receptor-like module  
  0.000000000327   3568-3603   LDL receptor-like module  
  0.000000000406   3526-3565   LDL receptor-like module  
  0.000000000484   950-987   LDL receptor-like module  
  0.000000000628   990-1028   LDL receptor-like module  
  0.00000000123   3487-3527   LDL receptor-like module  
  0.00000000124   906-944   LDL receptor-like module  
  0.00000000131   2705-2740   LDL receptor-like module  
  0.00000000144   1033-1073   LDL receptor-like module  
  0.0000000017   2746-2780   LDL receptor-like module  
  0.00000000183   3444-3483   LDL receptor-like module  
  0.00000000196   3610-3654   LDL receptor-like module  
  0.00000000209   2788-2824   LDL receptor-like module  
  0.00000000275   3-42   LDL receptor-like module  
  0.00000000367   2566-2607   LDL receptor-like module  
  0.00000000393   3407-3442   LDL receptor-like module  
  0.0000000196   3697-3736   LDL receptor-like module  
  0.0000000275   3651-3689   LDL receptor-like module  
  0.0000000275   2860-2901   LDL receptor-like module  
  0.0000000367   3288-3322   LDL receptor-like module  
  0.0000000641   3367-3405   LDL receptor-like module  
  0.000000275   2490-2528   LDL receptor-like module  
  0.000000406   1079-1119   LDL receptor-like module  
  0.000000563   2526-2567   LDL receptor-like module  
  0.00000183   2625-2655   LDL receptor-like module  
  0.0645   2825-2848   LDL receptor-like module  
ENSGACP00000000809   0.0000000000249   2-40   LDL receptor-like module  
  0.0000000000563   89-126   LDL receptor-like module  
  0.0000000000589   46-83   LDL receptor-like module  
  0.0000000000825   129-167   LDL receptor-like module  
  0.00000000017   172-212   LDL receptor-like module  
  0.0000000196   258-296   LDL receptor-like module  
  0.000000131   221-255   LDL receptor-like module  
ENSGACP00000001375   0.00000000249   2415-2454   LDL receptor-like module  
  0.00000000262   1551-1591   LDL receptor-like module  
  0.00000000288   1487-1526   LDL receptor-like module  
  0.00000000353   1369-1406   LDL receptor-like module  
  0.00000000419   2361-2399   LDL receptor-like module  
  0.00000000668   1411-1448   LDL receptor-like module  
  0.000000275   1447-1483   LDL receptor-like module  
  0.00000641   1647-1676   LDL receptor-like module  
  0.0000223   1593-1627   LDL receptor-like module  
  0.0000249   2223-2248   LDL receptor-like module  
ENSGACP00000001885   0.0000000236   4-39   LDL receptor-like module  
ENSGACP00000001890   0.00000000576   17-53   LDL receptor-like module  
ENSGACP00000003511   0.0000000511   290-326   LDL receptor-like module  
ENSGACP00000004003   0.00000000105   447-484   LDL receptor-like module  
  0.00000034   523-562   LDL receptor-like module  
  0.00000563   483-519   LDL receptor-like module  
ENSGACP00000004011   0.0000000000707   19-53   LDL receptor-like module  
  0.00000000641   96-127   LDL receptor-like module  
  0.00000327   132-168   LDL receptor-like module  
  0.000157   55-90   LDL receptor-like module  
ENSGACP00000005245   0.0000000144   437-477   LDL receptor-like module  
  0.000000681   209-245   LDL receptor-like module  
  0.00196   3-23   LDL receptor-like module  
ENSGACP00000006952   0.00000000000982   1239-1280   LDL receptor-like module  
  0.000000000013   2706-2749   LDL receptor-like module  
  0.0000000000183   1078-1117   LDL receptor-like module  
  0.000000000038   1037-1076   LDL receptor-like module  
  0.000000000055   2830-2868   LDL receptor-like module  
  0.0000000000576   3599-3638   LDL receptor-like module  
  0.0000000000916   3042-3082   LDL receptor-like module  
  0.00000000017   75-116   LDL receptor-like module  
  0.000000000262   2876-2912   LDL receptor-like module  
  0.000000000301   995-1033   LDL receptor-like module  
  0.000000000327   189-229   LDL receptor-like module  
  0.000000000393   1-36   LDL receptor-like module  
  0.000000000393   2671-2709   LDL receptor-like module  
  0.000000000563   2959-3001   LDL receptor-like module  
  0.000000000589   155-191   LDL receptor-like module  
  0.000000000641   3557-3601   LDL receptor-like module  
  0.000000000995   1120-1157   LDL receptor-like module  
  0.00000000196   3482-3517   LDL receptor-like module  
  0.00000000209   2999-3041   LDL receptor-like module  
  0.00000000209   3725-3765   LDL receptor-like module  
  0.00000000353   3898-3935   LDL receptor-like module  
  0.00000000602   3768-3805   LDL receptor-like module  
  0.00000000654   3690-3727   LDL receptor-like module  
  0.00000000681   3520-3562   LDL receptor-like module  
  0.00000000903   1158-1196   LDL receptor-like module  
  0.0000000144   2786-2832   LDL receptor-like module  
  0.0000000196   3812-3848   LDL receptor-like module  
  0.0000000497   38-75   LDL receptor-like module  
  0.0000000969   119-152   LDL receptor-like module  
  0.000000209   1202-1239   LDL receptor-like module  
  0.00000038   1284-1320   LDL receptor-like module  
  0.000000537   3855-3892   LDL receptor-like module  
  0.000000746   2917-2959   LDL receptor-like module  
  0.00000314   2754-2790   LDL receptor-like module  
  0.00000615   3653-3686   LDL receptor-like module  
ENSGACP00000006985   0.0000000000144   592-630   LDL receptor-like module  
  0.0000000000144   761-797   LDL receptor-like module  
  0.0000000000812   509-548   LDL receptor-like module  
  0.000000000183   806-842   LDL receptor-like module  
  0.000000000511   633-672   LDL receptor-like module  
  0.000000275   676-709   LDL receptor-like module  
  0.000000654   712-748   LDL receptor-like module  
  0.0000445   550-583   LDL receptor-like module  
  0.0589   919-936   LDL receptor-like module  
ENSGACP00000007875   0.000000000017   419-456   LDL receptor-like module  
  0.00000000128   261-298   LDL receptor-like module  
ENSGACP00000008429   0.000000471   324-360   LDL receptor-like module  
ENSGACP00000008436   0.000000406   275-311   LDL receptor-like module  
ENSGACP00000008876   0.000000000011   116-157   LDL receptor-like module  
  0.0000000000327   168-205   LDL receptor-like module  
  0.000000000249   1-37   LDL receptor-like module  
  0.000000000367   78-117   LDL receptor-like module  
  0.000000000772   40-78   LDL receptor-like module  
  0.000000000825   204-245   LDL receptor-like module  
  0.0000000563   249-283   LDL receptor-like module  
ENSGACP00000009055   0.00000000000942   171-209   LDL receptor-like module  
  0.0000000000851   207-248   LDL receptor-like module  
  0.000000000157   3-40   LDL receptor-like module  
  0.000000000916   121-159   LDL receptor-like module  
  0.00000000114   86-122   LDL receptor-like module  
  0.0000000707   43-81   LDL receptor-like module  
ENSGACP00000009061   0.00000000000851   171-209   LDL receptor-like module  
  0.0000000000785   207-248   LDL receptor-like module  
  0.000000000131   3-40   LDL receptor-like module  
  0.000000000825   121-159   LDL receptor-like module  
  0.00000000103   86-122   LDL receptor-like module  
  0.0000000628   43-81   LDL receptor-like module  
ENSGACP00000009064   0.00000000000838   171-209   LDL receptor-like module  
  0.0000000000785   207-248   LDL receptor-like module  
  0.000000000131   3-40   LDL receptor-like module  
  0.000000000812   121-159   LDL receptor-like module  
  0.00000000102   86-122   LDL receptor-like module  
  0.0000000628   43-81   LDL receptor-like module  
ENSGACP00000009126   0.000000000013   1065-1102   LDL receptor-like module  
  0.000000000017   1266-1307   LDL receptor-like module  
  0.000000000017   2984-3026   LDL receptor-like module  
  0.0000000000393   27-63   LDL receptor-like module  
  0.0000000000393   2903-2938   LDL receptor-like module  
  0.0000000000458   178-219   LDL receptor-like module  
  0.0000000000497   218-257   LDL receptor-like module  
  0.0000000000785   1145-1184   LDL receptor-like module  
  0.0000000000812   3025-3066   LDL receptor-like module  
  0.0000000000916   3627-3669   LDL receptor-like module  
  0.000000000196   3805-3843   LDL receptor-like module  
  0.000000000275   2734-2775   LDL receptor-like module  
  0.000000000576   3586-3628   LDL receptor-like module  
  0.000000000628   2698-2735   LDL receptor-like module  
  0.000000000995   102-142   LDL receptor-like module  
  0.00000000119   3069-3108   LDL receptor-like module  
  0.00000000314   2856-2894   LDL receptor-like module  
  0.0000000034   3718-3754   LDL receptor-like module  
  0.00000000628   3547-3587   LDL receptor-like module  
  0.0000000128   1230-1266   LDL receptor-like module  
  0.0000000144   3509-3545   LDL receptor-like module  
  0.0000000183   66-101   LDL receptor-like module  
  0.0000000196   3927-3963   LDL receptor-like module  
  0.000000034   1187-1225   LDL receptor-like module  
  0.000000144   3883-3921   LDL receptor-like module  
  0.000000157   2777-2817   LDL receptor-like module  
  0.000000196   147-180   LDL receptor-like module  
  0.000000275   2820-2858   LDL receptor-like module  
  0.000000471   1023-1059   LDL receptor-like module  
  0.000000589   3681-3714   LDL receptor-like module  
  0.000000707   1310-1347   LDL receptor-like module  
  0.00000144   2940-2985   LDL receptor-like module  
ENSGACP00000009133   0.000000000000851   122-164   LDL receptor-like module  
  0.00000000000249   40-76   LDL receptor-like module  
  0.0000000000034   163-204   LDL receptor-like module  
  0.0000000000223   246-286   LDL receptor-like module  
  0.000000000055   207-246   LDL receptor-like module  
  0.00000000157   1-32   LDL receptor-like module  
  0.00000000537   289-327   LDL receptor-like module  
  0.0000000903   81-124   LDL receptor-like module  
ENSGACP00000009611   0.0000000113   250-288   LDL receptor-like module  
ENSGACP00000010002   0.0000000000183   858-901   LDL receptor-like module  
  0.000000000183   900-941   LDL receptor-like module  
  0.000000000353   2737-2773   LDL receptor-like module  
  0.000000000602   3330-3374   LDL receptor-like module  
  0.000000000956   3455-3491   LDL receptor-like module  
  0.00000000144   944-980   LDL receptor-like module  
  0.00000000157   822-860   LDL receptor-like module  
  0.00000000196   3413-3449   LDL receptor-like module  
  0.00000000236   2868-2909   LDL receptor-like module  
  0.00000000275   3573-3610   LDL receptor-like module  
  0.00000000301   2658-2694   LDL receptor-like module  
  0.0000000034   3612-3656   LDL receptor-like module  
  0.00000000367   1029-1067   LDL receptor-like module  
  0.00000000367   3533-3568   LDL receptor-like module  
  0.00000000576   3372-3409   LDL receptor-like module  
  0.00000000798   3490-3530   LDL receptor-like module  
  0.00000000929   983-1016   LDL receptor-like module  
  0.0000000107   3293-3327   LDL receptor-like module  
  0.0000000144   1-40   LDL receptor-like module  
  0.0000000223   2781-2814   LDL receptor-like module  
  0.0000000236   2817-2857   LDL receptor-like module  
  0.0000000288   2697-2734   LDL receptor-like module  
  0.0000000576   3653-3687   LDL receptor-like module  
  0.0000000589   2563-2603   LDL receptor-like module  
  0.000000484   2488-2525   LDL receptor-like module  
  0.000000864   2523-2564   LDL receptor-like module  
  0.00000183   2617-2652   LDL receptor-like module  
  0.0000055   3700-3732   LDL receptor-like module  
  0.0131   1128-1148   LDL receptor-like module  
ENSGACP00000010016   0.00000000000196   42-85   LDL receptor-like module  
  0.000000000183   6-44   LDL receptor-like module  
  0.00000000275   125-159   LDL receptor-like module  
  0.0000000183   167-200   LDL receptor-like module  
  0.0000000209   84-123   LDL receptor-like module  
  0.000000393   263-297   LDL receptor-like module  
  0.00000497   234-259   LDL receptor-like module  
ENSGACP00000010183   0.000000000956   288-323   LDL receptor-like module  
  0.0000000038   252-289   LDL receptor-like module  
ENSGACP00000011403   0.0000000000131   58-96   LDL receptor-like module  
  0.000000484   10-48   LDL receptor-like module  
ENSGACP00000011618   0.0000497   56-88   LDL receptor-like module  
ENSGACP00000012292   0.0000000000602   827-868   LDL receptor-like module  
  0.000000000301   3327-3367   LDL receptor-like module  
  0.000000000314   2645-2682   LDL receptor-like module  
  0.000000000314   3528-3567   LDL receptor-like module  
  0.000000000353   868-910   LDL receptor-like module  
  0.000000000471   3612-3656   LDL receptor-like module  
  0.000000000497   2685-2725   LDL receptor-like module  
  0.000000000537   3489-3529   LDL receptor-like module  
  0.000000000615   953-991   LDL receptor-like module  
  0.000000000916   1041-1086   LDL receptor-like module  
  0.000000000969   3570-3605   LDL receptor-like module  
  0.0000000011   2515-2556   LDL receptor-like module  
  0.0000000017   6-44   LDL receptor-like module  
  0.0000000017   3445-3485   LDL receptor-like module  
  0.00000000183   993-1031   LDL receptor-like module  
  0.00000000249   908-948   LDL receptor-like module  
  0.00000000275   2862-2903   LDL receptor-like module  
  0.00000000327   2774-2810   LDL receptor-like module  
  0.0000000034   2731-2765   LDL receptor-like module  
  0.0000000055   3409-3444   LDL receptor-like module  
  0.00000000681   2555-2595   LDL receptor-like module  
  0.00000000995   2812-2851   LDL receptor-like module  
  0.0000000131   3288-3323   LDL receptor-like module  
  0.0000000314   3698-3738   LDL receptor-like module  
  0.0000000628   3369-3407   LDL receptor-like module  
  0.000000301   3657-3691   LDL receptor-like module  
  0.000000615   2480-2517   LDL receptor-like module  
  0.00000072   1104-1142   LDL receptor-like module  
  0.00000419   53-88   LDL receptor-like module  
ENSGACP00000012355   0.0000144   4-42   LDL receptor-like module  
ENSGACP00000013754   0.00000000641   162-200   LDL receptor-like module  
  0.0000000262   444-478   LDL receptor-like module  
  0.0000000982   404-441   LDL receptor-like module  
  0.000000249   203-246   LDL receptor-like module  
  0.00000223   366-402   LDL receptor-like module  
ENSGACP00000015038   0.000000000131   31-67   LDL receptor-like module  
  0.000000000262   113-150   LDL receptor-like module  
  0.00000000034   71-109   LDL receptor-like module  
ENSGACP00000016563   0.0000000419   301-337   LDL receptor-like module  
ENSGACP00000017328   0.00000000157   435-470   LDL receptor-like module  
  0.00000000851   506-540   LDL receptor-like module  
  0.00000000851   470-506   LDL receptor-like module  
ENSGACP00000017340   0.00000000157   431-466   LDL receptor-like module  
  0.00000000851   502-536   LDL receptor-like module  
  0.00000000864   466-502   LDL receptor-like module  
ENSGACP00000017595   0.0000122   74-109   LDL receptor-like module  
ENSGACP00000017603   0.000000000589   230-266   LDL receptor-like module  
  0.0000000183   65-101   LDL receptor-like module  
  0.0000000196   144-181   LDL receptor-like module  
  0.0000000484   24-62   LDL receptor-like module  
  0.000000183   109-140   LDL receptor-like module  
  0.00000038   195-226   LDL receptor-like module  
  0.00000288   277-309   LDL receptor-like module  
ENSGACP00000018218   0.0000000995   319-357   LDL receptor-like module  
ENSGACP00000019150   0.0000000107   285-321   LDL receptor-like module  
ENSGACP00000019650   0.0000000000589   402-439   LDL receptor-like module  
  0.0000000000694   121-157   LDL receptor-like module  
  0.0000000275   167-206   LDL receptor-like module  
  0.000000128   363-401   LDL receptor-like module  
  0.00000106   321-361   LDL receptor-like module  
ENSGACP00000019651   0.0000000000628   407-444   LDL receptor-like module  
  0.0000000000746   126-162   LDL receptor-like module  
  0.0000000301   172-211   LDL receptor-like module  
  0.000000131   368-406   LDL receptor-like module  
  0.00000113   326-366   LDL receptor-like module  
ENSGACP00000019665   0.00000000982   298-334   LDL receptor-like module  
ENSGACP00000020928   0.00000000116   60-95   LDL receptor-like module  
ENSGACP00000021384   0.0000000000537   225-263   LDL receptor-like module  
  0.000000000072   62-102   LDL receptor-like module  
  0.00000000017   27-64   LDL receptor-like module  
  0.000000000236   262-302   LDL receptor-like module  
  0.00000000288   174-210   LDL receptor-like module  
  0.0000000144   103-145   LDL receptor-like module  
  0.0000000223   307-344   LDL receptor-like module  
  0.017   151-179   LDL receptor-like module  
ENSGACP00000021553   0.00000017   112-148   LDL receptor-like module  
ENSGACP00000021560   0.00000017   113-149   LDL receptor-like module  
ENSGACP00000021563   0.00000017   106-142   LDL receptor-like module  
ENSGACP00000021570   0.000000147   97-137   LDL receptor-like module  
ENSGACP00000021571   0.000000258   121-161   LDL receptor-like module  
ENSGACP00000021895   0.0000000825   23-60   LDL receptor-like module  
ENSGACP00000022444   0.000000000034   40-77   LDL receptor-like module  
ENSGACP00000022509   0.000000000942   158-195   LDL receptor-like module  
  0.00000262   388-427   LDL receptor-like module  
ENSGACP00000022592   0.0000000000589   248-288   LDL receptor-like module  
  0.000000000196   131-168   LDL receptor-like module  
  0.000000000275   50-89   LDL receptor-like module  
  0.000000000432   213-250   LDL receptor-like module  
  0.00000000128   294-330   LDL receptor-like module  
  0.00000000419   171-209   LDL receptor-like module  
  0.00000000733   92-126   LDL receptor-like module  
  0.00000106   10-52   LDL receptor-like module  
ENSGACP00000023416   0.000000000929   823-860   LDL receptor-like module  
  0.00000000157   747-781   LDL receptor-like module  
  0.00000000654   902-941   LDL receptor-like module  
  0.00000000694   105-142   LDL receptor-like module  
  0.0000000249   866-899   LDL receptor-like module  
  0.0000000497   416-452   LDL receptor-like module  
  0.0000000497   327-363   LDL receptor-like module  
  0.0000000681   944-977   LDL receptor-like module  
  0.0000000759   669-701   LDL receptor-like module  
  0.0000000825   227-263   LDL receptor-like module  
  0.0000000825   186-228   LDL receptor-like module  
  0.000000089   543-576   LDL receptor-like module  
  0.000000127   25-62   LDL receptor-like module  
  0.000000144   368-401   LDL receptor-like module  
  0.000000157   67-101   LDL receptor-like module  
  0.00000017   285-319   LDL receptor-like module  
  0.000000458   587-625   LDL receptor-like module  
  0.000000602   706-740   LDL receptor-like module  
  0.000000864   629-662   LDL receptor-like module  
  0.00000113   790-820   LDL receptor-like module  
  0.00000249   504-537   LDL receptor-like module  
  0.00000458   458-490   LDL receptor-like module  
  0.00000694   161-184   LDL receptor-like module  
  0.000903   1-24   LDL receptor-like module  
  0.0589   144-160   LDL receptor-like module  
ENSGACP00000023420   0.00000000109   54-92   LDL receptor-like module  
ENSGACP00000023636   0.0000000000012   231-271   LDL receptor-like module  
  0.00000000000772   145-185   LDL receptor-like module  
  0.00000000000929   27-64   LDL receptor-like module  
  0.000000000131   184-224   LDL receptor-like module  
  0.000000000144   103-146   LDL receptor-like module  
  0.000000000353   269-309   LDL receptor-like module  
  0.000000000838   68-105   LDL receptor-like module  
  0.0000000353   314-350   LDL receptor-like module  
ENSGACP00000023666   0.0000000209   144-186   LDL receptor-like module  
ENSGACP00000023675   0.00000000196   86-126   LDL receptor-like module  
ENSGACP00000023933   0.00000262   226-262   LDL receptor-like module  
  0.00471   457-481   LDL receptor-like module  
ENSGACP00000025384   0.0000000000956   357-395   LDL receptor-like module  
  0.000000353   99-140   LDL receptor-like module  
  0.00012   269-308   LDL receptor-like module  
  0.000157   311-356   LDL receptor-like module  
ENSGACP00000025772   0.0000000000668   116-158   LDL receptor-like module  
  0.00000000017   77-117   LDL receptor-like module  
  0.000000000236   1-37   LDL receptor-like module  
  0.000000000589   203-244   LDL receptor-like module  
  0.00000000236   36-79   LDL receptor-like module  
  0.00000000275   168-204   LDL receptor-like module  
  0.000000128   249-283   LDL receptor-like module  
ENSGACP00000026665   0.000000249   106-143   LDL receptor-like module  
ENSGACP00000027169   0.0000000301   44-82   LDL receptor-like module  
ENSGACP00000027654   0.000000000113   563-601   LDL receptor-like module  
  0.000000034   115-154   LDL receptor-like module  
 
Weak hits:
ENSGACP00000009161   0.00834   84-129   LDL receptor-like module  
ENSGACP00000018265   0.000236   46-76   LDL receptor-like module  
  0.000916   78-117   LDL receptor-like module  
ENSGACP00000018269   0.000275   40-70   LDL receptor-like module  
  0.00182   72-111   LDL receptor-like module  
ENSGACP00000018274   0.000262   40-70   LDL receptor-like module  
  0.00179   72-111   LDL receptor-like module  

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Select to display   Genome       Domains   Proteins
No Yes ALL   327216 327216
No Yes Homo sapiens 76_38 Human 548 151
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 216 47
No Yes Gorilla gorilla 76_3.1 Western gorilla 276 65
No Yes Pongo abelii 76_2 Sumatran orangutan 204 46
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 205 51
No Yes Papio anubis 76 Olive baboon 223 47
No Yes Macaca mulatta 76_1 Rhesus monkey 283 70
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 461 115
No Yes Otolemur garnettii 76_3 Small-eared galago 203 44
No Yes Microcebus murinus 76_1 Gray mouse lemur 178 42
No Yes Rattus norvegicus 76_5.0 Norway rat 208 49
No Yes Mus musculus 76_38 House mouse 402 97
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 182 41
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 224 46
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 238 49
No Yes Cavia porcellus 76_3 Domestic guinea pig 223 51
No Yes Oryctolagus cuniculus 76_2 Rabbit 225 50
No Yes Ochotona princeps 76 American pika 188 39
No Yes Tupaia belangeri 76 Northern tree shrew 156 37
No Yes Sus scrofa 76_10.2 Pig 167 58
No Yes Bos taurus 76_3.1 Cattle 211 52
No Yes Ovis aries 76_3.1 Sheep 271 58
No Yes Vicugna pacos 76_1 Alpaca 117 23
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 196 45
No Yes Mustela putorius furo 76_1.0 Domestic ferret 233 47
No Yes Ailuropoda melanoleuca 76_1 Giant panda 261 52
No Yes Canis familiaris 76_3.1 Dog 374 66
No Yes Felis catus 76_6.2 Domestic cat 246 53
No Yes Equus caballus 76_2 Horse 321 60
No Yes Myotis lucifugus 76_2.0 Little brown bat 187 45
No Yes Pteropus vampyrus 76_1 Large flying fox 203 43
No Yes Sorex araneus 76_1 European shrew 106 25
No Yes Erinaceus europaeus 76 Western European hedgehog 139 33
No Yes Procavia capensis 76_1 Cape rock hyrax 174 36
No Yes Loxodonta africana 76_3 African savanna elephant 236 56
No Yes Echinops telfairi 76 Small Madagascar hedgehog 144 32
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 268 57
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 117 25
No Yes Macropus eugenii 76_1.0 Tammar wallaby 183 39
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 228 61
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 214 49
No Yes Ornithorhynchus anatinus 76_5 Platypus 206 53
No Yes Saccoglossus kowalevskii v3.0   1261 297
No Yes Petromyzon marinus 76_7.0 Sea lamprey 203 25
No Yes Meleagris gallopavo 76_2 Turkey 201 50
No Yes Gallus gallus 76_4 Chicken 222 45
No Yes Anas platyrhynchos 76_1.0 Mallard 185 45
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 193 44
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 218 43
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 212 59
No Yes Anolis carolinensis 76_2.0 Green anole 230 49
No Yes Xenopus laevis African clawed frog 176 45
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 231 62
No Yes Latimeria chalumnae 76_1 Coelacanth 249 52
No Yes Lepisosteus oculatus 76 Spotted gar 373 70
No Yes Gadus morhua 76_1 Atlantic cod 251 50
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 445 69
No Yes Takifugu rubripes 76_4 Torafugu 1153 201
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 365 68
No Yes Oryzias latipes 76_1 Japanese medaka 304 56
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 308 56
No Yes Poecilia formosa 76 Amazon molly 313 57
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 440 81
No Yes Astyanax mexicanus 76 Mexican tetra 293 73
No Yes Danio rerio 76_9 Zebrafish 537 103
No Yes Oikopleura dioica   54 30
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 454 80
No Yes Ciona intestinalis 76 Vase tunicate 156 67
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 601 193
No Yes Adineta vaga   274 125
No Yes Octopus bimaculoides 280   398 81
No Yes Crassostrea gigas 22 Pacific oyster 237 86
No Yes Lottia gigantea Owl limpet 212 60
No Yes Helobdella robusta   208 57
No Yes Capitella sp. I   359 115
No Yes Danaus plexippus OGS1.0 Monarch butterfly 163 38
No Yes Heliconius melpomene Postman butterfly 145 29
No Yes Bombyx mori Domestic silkworm 97 41
No Yes Nasonia vitripennis Jewel wasp 89 27
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 323 64
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 128 38
No Yes Linepithema humile v1.1 Argentine ant 122 43
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 116 43
No Yes Solenopsis invicta v.2.2.3 Red fire ant 98 38
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 126 36
No Yes Atta cephalotes v1.1   125 40
No Yes Camponotus floridanus v3.3 Florida carpenter ant 131 35
No Yes Lucilia cuprina Australian sheep blowfly 189 33
No Yes Drosophila grimshawi 1.3   174 37
No Yes Drosophila willistoni 1.3   172 39
No Yes Drosophila pseudoobscura 2.13   181 42
No Yes Drosophila persimilis 1.3   170 43
No Yes Drosophila suzukii   171 33
No Yes Drosophila yakuba 1.3   172 38
No Yes Drosophila simulans 1.3   99 33
No Yes Drosophila sechellia 1.3   155 40
No Yes Drosophila melanogaster 76_5 Fruit fly 643 97
No Yes Drosophila erecta 1.3   173 37
No Yes Drosophila ananassae 1.3   157 32
No Yes Drosophila virilis 1.2   158 36
No Yes Drosophila mojavensis 1.3   171 37
No Yes Megaselia scalaris 22   44 19
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 166 35
No Yes Culex pipiens quinquefasciatus Southern house mosquito 107 38
No Yes Anopheles darlingi 22 American malaria mosquito 118 28
No Yes Anopheles gambiae 49_3j African malaria mosquito 161 32
No Yes Tribolium castaneum 3.0 Red flour beetle 179 43
No Yes Pediculus humanus corporis (Early assembly) Human body louse 171 34
No Yes Acyrthosiphon pisum Pea aphid 150 36
No Yes Rhodnius prolixus 22   125 30
No Yes Daphnia pulex Common water flea 221 61
No Yes Strigamia maritima 22   202 47
No Yes Sarcoptes scabiei   128 42
No Yes Tetranychus urticae Two-spotted spider mite 193 71
No Yes Ixodes scapularis (Preliminary) Black-legged tick 139 44
No Yes Pristionchus pacificus   91 28
No Yes Meloidogyne incognita Southern root-knot nematode 95 18
No Yes Meloidogyne hapla   27 13
No Yes Onchocerca volvulus 22   73 17
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 129 27
No Yes Caenorhabditis japonica   103 24
No Yes Caenorhabditis brenneri   168 39
No Yes Caenorhabditis remanei   123 29
No Yes Caenorhabditis elegans 76_235 Roundworm 177 44
No Yes Caenorhabditis briggsae 2   118 26
No Yes Trichinella spiralis 22   119 32
No Yes Hymenolepis microstoma   45 11
No Yes Echinococcus multilocularis   39 13
No Yes Echinococcus granulosus   38 12
No Yes Taenia solium Pork tapeworm 35 17
No Yes Schistosoma mansoni   18 9
No Yes Mnemiopsis leidyi Sea walnut 413 204
No Yes Thelohanellus kitauei   270 126
No Yes Acropora digitifera v1.0   105 35
No Yes Nematostella vectensis 1.0 Starlet sea anemone 144 35
No Yes Hydra vulgaris   77 17
No Yes Amphimedon queenslandica   13 3
No Yes Trichoplax adhaerens   103 18
No Yes Proterospongia sp. ATCC 50818   2 2
No Yes Monosiga brevicollis   17 17
No Yes Sphaeroforma arctica JP610   1 1
No Yes Capsaspora owczarzaki ATCC 30864   2 2
No Yes Rhizopus oryzae RA 99-880   1 1
No Yes Rhizomucor miehei CAU432   1 1
No Yes Sphaerobolus stellatus v1.0   1 1
No Yes Tulasnella calospora AL13/4D v1.0   1 1
No Yes Botrytis cinerea B05.10   1 1
No Yes Sclerotinia sclerotiorum   1 1
No Yes Zasmidium cellare ATCC 36951 v1.0   1 1
No Yes Paracoccidioides brasiliensis Pb18   1 1
No Yes Histoplasma capsulatum class NAmI strain WU24   1 1
No Yes Penicillium chrysogenum Wisconsin 54-1255   1 1
No Yes Penicillium chrysogenum v1.0   1 1
No Yes Aspergillus acidus v1.0   1 1
No Yes Aspergillus brasiliensis v1.0   1 1
No Yes Aspergillus terreus NIH2624   1 1
No Yes Aspergillus tubingensis v1.0   1 1
No Yes Aspergillus niger 22   1 1
No Yes Aspergillus niger ATCC 1015   1 1
No Yes Tuber melanosporum Mel28 22   1 1
No Yes Tuber melanosporum Vittad Perigord truffle 1 1
No Yes Saccharomyces paradoxus MIT   1 1
No Yes Schizosaccharomyces japonicus yFS275   1 1
No Yes Catenaria anguillulae PL171 v1.0   1 1
No Yes Allomyces macrogynus ATCC 38327   1 1
No Yes Dictyostelium purpureum   1 1
No Yes Gossypium raimondii v221   2 2
No Yes Citrus clementina v165   2 2
No Yes Citrus sinensis v154 Sweet orange 2 2
No Yes Manihot esculenta v147 Cassava 1 1
No Yes Populus trichocarpa v156 Black cottonwood 1 1
No Yes Solanum lycopersicum v.2.3 Tomato 1 1
No Yes Solanum tuberosum Potato 3 3
No Yes Triticum aestivum 22 Bread wheat 5 5
No Yes Brachypodium distachyon Stiff brome 3 3
No Yes Panicum virgatum v202 Switchgrass 1 1
No Yes Musa balbisiana Balbis banana 1 1
No Yes Musa acuminata 22 Wild Malaysian banana 2 2
No Yes Coccomyxa subellipsoidea sp. C-169 v2   1 1
No Yes Volvox carteri f. nagariensis   1 1
No Yes Volvox carteri v199   1 1
No Yes Chlamydomonas reinhardtii 4.0   1 1
No Yes Thecamonas trahens ATCC 50062   1 1
No Yes Bigelowiella natans CCMP2755 22   2 2
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   1 1
No Yes Trypanosoma vivax   1 1
No Yes Trypanosoma congolense 2.4   1 1
No Yes Trypanosoma brucei gambiense v4.1   1 1
No Yes Trypanosoma brucei TREU927 v4.1   1 1
No Yes Pythium iwayamai DAOM BR242034 22   1 1
No Yes Pythium vexans DAOM BR484 22   1 1
No Yes Phytophthora sojae 1.1   1 1
No Yes Perkinsus marinus ATCC 50983   2 2
No Yes Naegleria gruberi   1 1
No Yes Trichomonas vaginalis   8 6
No Yes Emiliania huxleyi CCMP1516   1 1
No Yes Haliangium ochraceum DSM 14365   4 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 272 61
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 446 71
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 209 34
No Yes Ascaris suum Victoria/Ghent Pig roundworm 106 28
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 150 35
No Yes Cryptococcus neoformans var. grubii H99   1 1
No Yes Cryptococcus neoformans B-3501A   1 1
No Yes Cryptococcus neoformans JEC21   1 1
No Yes Paracoccidioides brasiliensis Pb03   1 1
No Yes Histoplasma capsulatum H88   1 1
No Yes Histoplasma capsulatum G186AR   1 1
No Yes Batrachochytrium dendrobatidis JAM81   1 1
No Yes Trypanosoma brucei Lister 427 v4.1   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 505 148
No Yes Homo sapiens (NCBI version) Human 303 75
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 220 45
No Yes Heliconius numata (Incomplete)   12 9
No Yes Loa loa v3.3 (Request) Eye worm 74 20
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 63 26
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 55 14
No Yes Moniliophthora perniciosa FA553 (Genome survey)   1 1
No Yes Picea sitchensis (Incomplete) Sitka spruce 1 1
No Yes Ricinus communis (Early assembly) Castor bean 1 1
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   3 3
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 1 1
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 1 1
No Yes Homo sapiens 69_37 Human 219 45
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 212 44
No Yes Gorilla gorilla 69_3.1 Western gorilla 191 46
No Yes Pongo abelii 69_2 Sumatran orangutan 201 44
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 188 47
No Yes Macaca mulatta 69_1 Rhesus monkey 192 45
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 216 49
No Yes Otolemur garnettii 69_3 Small-eared galago 202 43
No Yes Microcebus murinus 69_1 Gray mouse lemur 178 42
No Yes Rattus norvegicus 69_3.4 Norway rat 203 51
No Yes Mus musculus 69_38 House mouse 222 47
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 182 41
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 193 41
No Yes Cavia porcellus 69_3 Domestic guinea pig 199 49
No Yes Oryctolagus cuniculus 69_2 Rabbit 202 46
No Yes Ochotona princeps 69 American pika 188 39
No Yes Tupaia belangeri 69 Northern tree shrew 156 37
No Yes Sus scrofa 69_10.2 Pig 143 48
No Yes Bos taurus 69_3.1 Cattle 205 47
No Yes Vicugna pacos 69_1 Alpaca 117 23
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 196 45
No Yes Mustela putorius furo 69_1.0 Domestic ferret 230 46
No Yes Ailuropoda melanoleuca 69_1 Giant panda 224 48
No Yes Canis familiaris 69_3.1 Dog 243 49
No Yes Felis catus 69 Domestic cat 141 37
No Yes Equus caballus 69_2 Horse 223 52
No Yes Myotis lucifugus 69_2.0 Little brown bat 183 43
No Yes Pteropus vampyrus 69_1 Large flying fox 203 43
No Yes Sorex araneus 69_1 European shrew 106 25
No Yes Erinaceus europaeus 69 Western European hedgehog 139 33
No Yes Procavia capensis 69_1 Cape rock hyrax 174 36
No Yes Loxodonta africana 69_3 African savanna elephant 187 43
No Yes Echinops telfairi 69 Small Madagascar hedgehog 144 32
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 144 28
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 117 25
No Yes Macropus eugenii 69_1.0 Tammar wallaby 183 39
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 181 44
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 212 48
No Yes Ornithorhynchus anatinus 69_5 Platypus 175 47
No Yes Petromyzon marinus 69_7.0 Sea lamprey 168 21
No Yes Meleagris gallopavo 69_2 Turkey 169 44
No Yes Gallus gallus 69_2 Chicken 171 37
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 187 40
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 175 46
No Yes Anolis carolinensis 69_2.0 Green anole 223 47
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 220 53
No Yes Latimeria chalumnae 69_1 Coelacanth 192 43
No Yes Gadus morhua 69_1 Atlantic cod 237 47
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 307 53
No Yes Takifugu rubripes 69_4 Torafugu 272 48
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 314 55
No Yes Oryzias latipes 69_1 Japanese medaka 275 44
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 308 56
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 337 58
No Yes Danio rerio 69_9 Zebrafish 342 61
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 155 51
No Yes Ciona intestinalis 69 Vase tunicate 143 62
No Yes Drosophila melanogaster 69_5 Fruit fly 168 35
No Yes Caenorhabditis elegans 69_215 Roundworm 126 26
No Yes 1_Upper_euphotic (meta-genome)   3 2
No Yes 3_Below_base_of_euphotic (meta-genome)   1 1
No Yes 5_Below_upper_mesopelagic (meta-genome)   1 1
No Yes 6_Upper_euphotic (meta-genome)   2 1
No Yes 7_Oxygen_minimum_layer (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   1 1
No Yes NCBI 2017_08 genome   143684 28917
No Yes Protozoadb 2010_08 (Protozoadb)   18 14
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   8 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   2 2
No Yes STRING v9.0.5 (STRING)   10524 2529
No Yes Uniprot 2018_03 genome   103788 23713
No Yes Global Ocean Sampling Expedition (GOS)   193 113
No Yes PDB chains (SCOP 1.75) (PDB)   26 18
No Yes Protein Data Bank (all PDB sequenc)   207 160
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   244 244
No Yes TargetDB (Targets)   96 34

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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