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  Home > Genomes > Monodelphis domestica 69_5 > Virus ectodomain domains


Virus ectodomain superfamily domain assignments
in
Monodelphis domestica 69_5

Network of domain occurrence in all genomes

Assignment details

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Monodelphis domestica 69_5 has 25 significant domains in 25 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSMODP00000018011   4.73e-18   4-58   Virus ectodomain  
ENSMODP00000038762   4.06e-28   182-283   Virus ectodomain  
ENSMODP00000038784   1.28e-26   246-344   Virus ectodomain  
ENSMODP00000038846   4.28e-29   418-519   Virus ectodomain  
ENSMODP00000038851   0.0000000456   212-275   Virus ectodomain  
ENSMODP00000038917   4.28e-29   150-252   Virus ectodomain  
ENSMODP00000038944   3.34e-28   420-522   Virus ectodomain  
ENSMODP00000039030   2.33e-27   446-546   Virus ectodomain  
ENSMODP00000039231   8.34e-20   395-490   Virus ectodomain  
ENSMODP00000039290   0.000000000000556   417-488   Virus ectodomain  
ENSMODP00000039342   1.17e-28   420-522   Virus ectodomain  
ENSMODP00000039477   8.89e-29   56-157   Virus ectodomain  
ENSMODP00000039830   3e-24   315-412   Virus ectodomain  
ENSMODP00000039869   6.67e-29   420-522   Virus ectodomain  
ENSMODP00000040068   3.84e-20   420-502   Virus ectodomain  
ENSMODP00000040230   9.45e-29   241-341   Virus ectodomain  
ENSMODP00000040252   8.89e-29   138-239   Virus ectodomain  
ENSMODP00000040253   8.89e-27   201-303   Virus ectodomain  
ENSMODP00000040598   4.23e-27   285-387   Virus ectodomain  
ENSMODP00000040713   0.00000612   333-397   Virus ectodomain  
ENSMODP00000040815   2.17e-29   143-245   Virus ectodomain  
ENSMODP00000041083   8.89e-29   138-240   Virus ectodomain  
ENSMODP00000041115   1.83e-28   430-530   Virus ectodomain  
ENSMODP00000041227   1.72e-27   211-313   Virus ectodomain  
ENSMODP00000041346   7.78e-27   117-215   Virus ectodomain  
 
Weak hits:
ENSMODP00000039632   0.0245   127-208   Virus ectodomain  
ENSMODP00000040892   0.0289   125-208   Virus ectodomain  

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Select to display   Genome       Domains   Proteins
No Yes ALL   129255 129255
No Yes Homo sapiens 76_38 Human 9 9
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 1 1
No Yes Gorilla gorilla 76_3.1 Western gorilla 1 1
No Yes Pongo abelii 76_2 Sumatran orangutan 2 2
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 3 3
No Yes Papio anubis 76 Olive baboon 3 3
No Yes Macaca mulatta 76_1 Rhesus monkey 3 3
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 2 2
No Yes Rattus norvegicus 76_5.0 Norway rat 1 1
No Yes Mus musculus 76_38 House mouse 5 5
No Yes Cavia porcellus 76_3 Domestic guinea pig 1 1
No Yes Oryctolagus cuniculus 76_2 Rabbit 3 3
No Yes Sus scrofa 76_10.2 Pig 15 15
No Yes Ovis aries 76_3.1 Sheep 30 30
No Yes Mustela putorius furo 76_1.0 Domestic ferret 6 6
No Yes Canis familiaris 76_3.1 Dog 2 2
No Yes Felis catus 76_6.2 Domestic cat 19 19
No Yes Echinops telfairi 76 Small Madagascar hedgehog 1 1
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 99 99
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 1 1
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 25 25
No Yes Meleagris gallopavo 76_2 Turkey 3 3
No Yes Anas platyrhynchos 76_1.0 Mallard 4 4
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 3 3
No Yes Anolis carolinensis 76_2.0 Green anole 18 18
No Yes Lepisosteus oculatus 76 Spotted gar 3 3
No Yes Takifugu rubripes 76_4 Torafugu 13 13
No Yes Oryzias latipes 76_1 Japanese medaka 2 2
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 4 4
No Yes Poecilia formosa 76 Amazon molly 2 2
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 2 2
No Yes Astyanax mexicanus 76 Mexican tetra 2 2
No Yes Danio rerio 76_9 Zebrafish 2 2
No Yes Mnemiopsis leidyi Sea walnut 2 2
No Yes Trypanosoma congolense 2.4   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 4 4
No Yes Homo sapiens 75_37 (old version GRC) Human 10 10
No Yes Homo sapiens (NCBI version) Human 8 8
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 5 5
No Yes Lotus japonicus (Early assembly)   1 1
No Yes Homo sapiens 69_37 Human 4 4
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 1 1
No Yes Gorilla gorilla 69_3.1 Western gorilla 1 1
No Yes Pongo abelii 69_2 Sumatran orangutan 2 2
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 3 3
No Yes Macaca mulatta 69_1 Rhesus monkey 3 3
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 2 2
No Yes Mus musculus 69_38 House mouse 5 5
No Yes Cavia porcellus 69_3 Domestic guinea pig 1 1
No Yes Sus scrofa 69_10.2 Pig 14 14
No Yes Mustela putorius furo 69_1.0 Domestic ferret 6 6
No Yes Canis familiaris 69_3.1 Dog 2 2
No Yes Echinops telfairi 69 Small Madagascar hedgehog 1 1
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 1 1
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 25 25
No Yes Meleagris gallopavo 69_2 Turkey 3 3
No Yes Gallus gallus 69_2 Chicken 4 4
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 3 3
No Yes Anolis carolinensis 69_2.0 Green anole 8 8
No Yes Takifugu rubripes 69_4 Torafugu 13 13
No Yes Oryzias latipes 69_1 Japanese medaka 2 2
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 4 4
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 2 2
No Yes Danio rerio 69_9 Zebrafish 2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   1 1
No Yes NCBI 2017_08 genome   1176 1167
No Yes STRING v9.0.5 (STRING)   40 40
No Yes Uniprot 2018_03 genome   96739 95383
No Yes Global Ocean Sampling Expedition (GOS)   2 2
No Yes NCBI viral sequences (Viral)   87 80
No Yes PDB chains (SCOP 1.75) (PDB)   36 36
No Yes Protein Data Bank (all PDB sequenc)   872 708
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   740 649
No Yes TargetDB (Targets)   2 2
No Yes UniProt viral sequences (Viral)   29028 28845

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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