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Variable surface antigen VlsE superfamily domain assignments
in
NCBI viral sequences

Network of domain occurrence in all genomes


Assignment details

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NCBI viral sequences (Viral) has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|13095856|ref|NP_076746.1|   0.00000144   29-146   Variable surface antigen VlsE  
gi|593778541|ref|YP_009016382.1|   0.0000929   772-863   Variable surface antigen VlsE  
 
Weak hits:
gi|109289951|ref|YP_655483.1|   0.017   703-834   Variable surface antigen VlsE  
gi|114680182|ref|YP_758595.1|   0.00759   220-305   Variable surface antigen VlsE  
gi|119964634|ref|YP_950830.1|   0.00693   222-307   Variable surface antigen VlsE  
gi|134288828|ref|YP_001111201.1|   0.00654   56-171   Variable surface antigen VlsE  
gi|148750852|ref|YP_001285896.1|   0.000288   34-140   Variable surface antigen VlsE  
gi|156564049|ref|YP_001429792.1|   0.00366   365-452   Variable surface antigen VlsE  
gi|158079487|ref|YP_001504300.1|   0.017   48-112   Variable surface antigen VlsE  
gi|194100285|ref|YP_002003483.1|   0.0589   7-95   Variable surface antigen VlsE  
gi|194100393|ref|YP_002003968.1|   0.0955   5-71   Variable surface antigen VlsE  
gi|21234374|ref|NP_640284.1|   0.0458   32-145   Variable surface antigen VlsE  
gi|23577866|ref|NP_703118.1|   0.00301   227-314   Variable surface antigen VlsE  
gi|237643663|ref|YP_002884353.1|   0.000183   204-308   Variable surface antigen VlsE  
gi|30065707|ref|NP_839852.1|   0.00628   176-266   Variable surface antigen VlsE  
gi|32469424|ref|NP_862888.1|   0.000759   367-512   Variable surface antigen VlsE  
gi|326536936|ref|YP_004306343.1|   0.0863   7-93   Variable surface antigen VlsE  
gi|359802298|ref|YP_004935764.1|   0.0222   271-427   Variable surface antigen VlsE  
gi|363540699|ref|YP_004894443.1|   0.0798   131-207   Variable surface antigen VlsE  
gi|388570546|ref|YP_006382944.1|   0.00432   545-691   Variable surface antigen VlsE  
gi|390933790|ref|YP_006391295.1|   0.0484   35-109   Variable surface antigen VlsE  
gi|39653695|ref|NP_945260.1|   0.0615   122-185   Variable surface antigen VlsE  
gi|399528555|ref|YP_006560477.1|   0.0759   571-697   Variable surface antigen VlsE  
gi|414086273|ref|YP_006986463.1|   0.0366   50-130   Variable surface antigen VlsE  
gi|414087399|ref|YP_006987586.1|   0.0248   50-153   Variable surface antigen VlsE  
gi|422936752|ref|YP_007007022.1|   0.0222   99-244   Variable surface antigen VlsE  
gi|448260155|ref|YP_007348252.1|   0.000418   15-145   Variable surface antigen VlsE  
gi|448260156|ref|YP_007348253.1|   0.0209   12-86   Variable surface antigen VlsE  
gi|448825347|ref|YP_007418278.1|   0.0798   131-207   Variable surface antigen VlsE  
gi|460042691|ref|YP_007518113.1|   0.0798   317-437   Variable surface antigen VlsE  
gi|472339221|ref|YP_007672756.1|   0.0798   317-437   Variable surface antigen VlsE  
gi|472340054|ref|YP_007673582.1|   0.0549   226-316   Variable surface antigen VlsE  
gi|472437238|ref|YP_007676649.1|   0.0876   571-697   Variable surface antigen VlsE  
gi|479336585|ref|YP_007869933.1|   0.0536   70-183   Variable surface antigen VlsE  
gi|509139343|ref|YP_008058236.1|   0.085   16-115   Variable surface antigen VlsE  
gi|514051687|ref|YP_008126113.1|   0.0915   673-801   Variable surface antigen VlsE  
gi|514231544|ref|YP_008130219.1|   0.0981   22-181   Variable surface antigen VlsE  
gi|51980137|ref|YP_077204.1|   0.00405   11-108   Variable surface antigen VlsE  
gi|525972268|ref|YP_008239792.1|   0.017   703-834   Variable surface antigen VlsE  
gi|526120075|ref|YP_008319978.1|   0.051   224-290   Variable surface antigen VlsE  
gi|526244594|ref|YP_008318218.1|   0.0641   770-853   Variable surface antigen VlsE  
gi|543171811|ref|YP_008532084.1|   0.0353   17-112   Variable surface antigen VlsE  
gi|563398205|ref|YP_008857964.1|   0.0392   101-216   Variable surface antigen VlsE  
gi|563399209|ref|YP_008859053.1|   0.0392   101-216   Variable surface antigen VlsE  
gi|571797891|ref|YP_008772057.1|   0.00209   686-799   Variable surface antigen VlsE  
  0.034   163-344   Variable surface antigen VlsE  
gi|593774650|ref|YP_009012269.1|   0.00235   421-581   Variable surface antigen VlsE  
gi|593776244|ref|YP_009014097.1|   0.0445   74-169   Variable surface antigen VlsE  
gi|640884886|ref|YP_009032171.1|   0.0471   160-249   Variable surface antigen VlsE  
gi|658307241|ref|YP_009042725.1|   0.000772   979-1103   Variable surface antigen VlsE  
gi|658307483|ref|YP_009043180.1|   0.00209   979-1104   Variable surface antigen VlsE  
gi|658307767|ref|YP_009043947.1|   0.00602   980-1103   Variable surface antigen VlsE  
gi|658607324|ref|YP_009044315.1|   0.0484   570-697   Variable surface antigen VlsE  
gi|658607784|ref|YP_009044782.1|   0.0575   616-720   Variable surface antigen VlsE  
gi|89886010|ref|YP_516207.1|   0.00183   47-120   Variable surface antigen VlsE  
gi|90592666|ref|YP_529581.1|   0.0068   5-82   Variable surface antigen VlsE  
gi|9625456|ref|NP_039690.1|   0.00432   545-691   Variable surface antigen VlsE  
gi|9630330|ref|NP_046759.1|   0.00628   176-266   Variable surface antigen VlsE  
gi|9630931|ref|NP_047528.1|   0.000183   204-308   Variable surface antigen VlsE  
gi|9635180|ref|NP_058454.1|   0.0418   137-191   Variable surface antigen VlsE  

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Select to display   Genome       Domains   Proteins
No Yes ALL   5226 5226
No Yes Borrelia afzelii PKo   4 3
No Yes Borrelia burgdorferi B31   1 1
No Yes Borrelia recurrentis A1   18 17
No Yes Borrelia duttonii Ly   68 68
No Yes Borrelia crocidurae str. Achema   156 156
No Yes Borrelia hermsii DAH   18 18
No Yes Halalkalicoccus jeotgali B3   1 1
No Yes Lactococcus lactis subsp. lactis KLDS 4.0325   1 1
No Yes Lactococcus lactis subsp. lactis Il1403   1 1
No Yes Lactococcus lactis subsp. cremoris A76   1 1
No Yes Borrelia valaisiana VS116   5 3
No Yes Borrelia afzelii PKo   4 3
No Yes Borrelia burgdorferi JD1   2 2
No Yes NCBI 2017_08 genome   1425 1334
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes Sludge/Australian, Phrap Assembly (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   95 88
No Yes Uniprot 2018_03 genome   2971 2889
No Yes NCBI plasmid sequences (Plasmids)   429 338
No Yes NCBI viral sequences (Viral)   2 2
No Yes PDB chains (SCOP 1.75) (PDB)   1 1
No Yes Protein Data Bank (all PDB sequenc)   4 4
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   8 8
No Yes UniProt viral sequences (Viral)   1 1

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