SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

  Home > Genomes > Mus musculus 76_38 > SH2 domain domains


SH2 domain superfamily domain assignments
in
Mus musculus 76_38

Assignment details

(show help)


Mus musculus 76_38 has 281 significant domains in 262 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSMUSP00000000129   5.79e-31   451-581   SH2 domain  
ENSMUSP00000001036   0.000000000199   470-576,605-631   SH2 domain  
ENSMUSP00000002121   0.000000000106   1326-1417   SH2 domain  
ENSMUSP00000003370   1.85e-37   137-279   SH2 domain  
ENSMUSP00000004143   1.09e-33   585-707   SH2 domain  
ENSMUSP00000004145   8.35e-34   587-702   SH2 domain  
ENSMUSP00000004377   2.02e-28   4-107   SH2 domain  
  1.06e-25   94-215   SH2 domain  
ENSMUSP00000004959   9.96e-32   29-140   SH2 domain  
ENSMUSP00000005188   4.17e-23   406-512   SH2 domain  
ENSMUSP00000005839   5.25e-27   3-103   SH2 domain  
ENSMUSP00000005889   1.12e-25   636-765   SH2 domain  
ENSMUSP00000006293   2.93e-28   12-104,152-178   SH2 domain  
ENSMUSP00000014597   7.26e-38   113-255   SH2 domain  
ENSMUSP00000016498   4.58e-35   131-264   SH2 domain  
ENSMUSP00000016511   1.18e-33   74-211   SH2 domain  
ENSMUSP00000017751   1.48e-20   413-536   SH2 domain  
ENSMUSP00000017920   2.29e-26   10-120,161-187   SH2 domain  
ENSMUSP00000019456   5.79e-32   419-532   SH2 domain  
ENSMUSP00000019913   1.99e-40   118-261   SH2 domain  
ENSMUSP00000020215   1.2e-26   37-132   SH2 domain  
ENSMUSP00000020564   1.62e-28   317-427   SH2 domain  
ENSMUSP00000020664   1.48e-31   234-381   SH2 domain  
ENSMUSP00000020695   2.69e-23   1156-1287   SH2 domain  
ENSMUSP00000021090   1.56e-31   55-154,184-210   SH2 domain  
ENSMUSP00000021898   1.16e-27   356-466   SH2 domain  
ENSMUSP00000025705   2.63e-19   396-501,538-563   SH2 domain  
ENSMUSP00000025818   0.000000000000808   59-152   SH2 domain  
ENSMUSP00000027277   9.69e-44   565-701   SH2 domain  
ENSMUSP00000027291   1.24e-30   143-255   SH2 domain  
  4.04e-29   7-132   SH2 domain  
ENSMUSP00000027888   2.69e-37   168-308   SH2 domain  
ENSMUSP00000028190   1.88e-37   122-262   SH2 domain  
ENSMUSP00000028252   3.64e-32   424-535   SH2 domain  
ENSMUSP00000029164   5.92e-33   91-193   SH2 domain  
ENSMUSP00000029175   3.22e-39   145-289   SH2 domain  
ENSMUSP00000029709   1.24e-25   114-209   SH2 domain  
ENSMUSP00000029766   4.58e-25   133-251   SH2 domain  
ENSMUSP00000029806   7.94e-27   31-131   SH2 domain  
ENSMUSP00000030464   1.16e-31   349-456   SH2 domain  
  4.04e-31   54-162   SH2 domain  
ENSMUSP00000030693   4.55e-40   102-229   SH2 domain  
ENSMUSP00000031171   0.00000000000438   172-265   SH2 domain  
ENSMUSP00000032978   2.42e-25   524-629   SH2 domain  
ENSMUSP00000033617   6.26e-33   251-378   SH2 domain  
ENSMUSP00000034296   7.27e-32   608-712   SH2 domain  
  2.15e-29   317-421   SH2 domain  
ENSMUSP00000034863   5.39e-35   77-213   SH2 domain  
ENSMUSP00000035361   7.27e-28   357-461   SH2 domain  
ENSMUSP00000035908   6.6e-27   24-159   SH2 domain  
ENSMUSP00000036270   1.4e-27   667-768,817-843   SH2 domain  
ENSMUSP00000037418   2.69e-31   82-211   SH2 domain  
ENSMUSP00000038121   1.88e-23   70-173   SH2 domain  
ENSMUSP00000038130   0.000000000000235   145-238   SH2 domain  
ENSMUSP00000038591   6.33e-26   370-474   SH2 domain  
ENSMUSP00000038838   1.29e-37   124-267   SH2 domain  
ENSMUSP00000039955   5.95e-45   233-319   SH2 domain  
ENSMUSP00000040896   2.15e-24   388-509   SH2 domain  
ENSMUSP00000041087   1.35e-23   1131-1257   SH2 domain  
ENSMUSP00000041611   4.44e-24   329-423   SH2 domain  
ENSMUSP00000041902   2.09e-48   262-348   SH2 domain  
ENSMUSP00000043146   1.62e-24   510-614   SH2 domain  
ENSMUSP00000044647   3.77e-27   7-105   SH2 domain  
ENSMUSP00000045135   1.48e-27   113-232   SH2 domain  
ENSMUSP00000046532   1.94e-28   49-138   SH2 domain  
ENSMUSP00000047004   3.37e-31   345-451   SH2 domain  
  1.75e-30   53-160   SH2 domain  
ENSMUSP00000047656   4.31e-28   198-325   SH2 domain  
ENSMUSP00000048057   2.29e-26   20-117   SH2 domain  
ENSMUSP00000052625   1.12e-25   37-132   SH2 domain  
ENSMUSP00000056621   2.69e-22   403-514   SH2 domain  
ENSMUSP00000056774   7.14e-31   615-721   SH2 domain  
  2.56e-30   302-437   SH2 domain  
ENSMUSP00000057707   1.42e-38   119-244   SH2 domain  
ENSMUSP00000057844   7e-22   324-441   SH2 domain  
ENSMUSP00000058447   0.00000519   51-143   SH2 domain  
ENSMUSP00000058757   2.96e-31   111-216   SH2 domain  
  2.42e-29   3-106   SH2 domain  
ENSMUSP00000059129   3.5e-23   32-129   SH2 domain  
ENSMUSP00000059658   7.94e-26   362-490   SH2 domain  
ENSMUSP00000060073   0.000000000000007   370-474,510-535   SH2 domain  
ENSMUSP00000060433   4.44e-28   376-498   SH2 domain  
ENSMUSP00000060771   0.0000000000151   59-157   SH2 domain  
ENSMUSP00000060828   1.17e-31   146-259   SH2 domain  
  2.15e-31   11-136   SH2 domain  
ENSMUSP00000062782   3.39e-24   658-759,836-862   SH2 domain  
ENSMUSP00000064394   2.63e-19   396-501,538-563   SH2 domain  
ENSMUSP00000064708   9.02e-27   41-148   SH2 domain  
ENSMUSP00000064929   7.14e-27   372-492   SH2 domain  
ENSMUSP00000066031   2.56e-25   272-380   SH2 domain  
ENSMUSP00000066209   2.83e-39   122-265   SH2 domain  
ENSMUSP00000066743   2.83e-44   569-710   SH2 domain  
ENSMUSP00000070825   7.67e-24   291-405   SH2 domain  
ENSMUSP00000070890   0.000000000000415   447-553   SH2 domain  
ENSMUSP00000071836   4.71e-29   214-345   SH2 domain  
ENSMUSP00000071970   2.29e-26   32-127   SH2 domain  
ENSMUSP00000072154   2.65e-40   151-295   SH2 domain  
ENSMUSP00000072763   2.83e-27   7-105   SH2 domain  
ENSMUSP00000073509   3.77e-28   221-366   SH2 domain  
ENSMUSP00000073866   5.79e-24   201-318   SH2 domain  
ENSMUSP00000075167   2.02e-37   141-281   SH2 domain  
ENSMUSP00000079733   1.88e-27   440-578   SH2 domain  
ENSMUSP00000079991   5.25e-31   621-736   SH2 domain  
  6.06e-26   515-636   SH2 domain  
ENSMUSP00000082183   2.83e-24   71-166   SH2 domain  
ENSMUSP00000082855   2.83e-39   566-682   SH2 domain  
ENSMUSP00000083490   4.44e-24   329-423   SH2 domain  
ENSMUSP00000083611   8.19e-27   232-370   SH2 domain  
ENSMUSP00000087117   1.23e-20   161-278   SH2 domain  
ENSMUSP00000089708   4.98e-35   529-648   SH2 domain  
ENSMUSP00000090237   3.13e-39   151-295   SH2 domain  
ENSMUSP00000090342   1.04e-41   576-711   SH2 domain  
ENSMUSP00000090803   1.48e-26   10-120,161-187   SH2 domain  
ENSMUSP00000091011   2.96e-31   480-593   SH2 domain  
ENSMUSP00000091940   1.05e-27   467-571   SH2 domain  
ENSMUSP00000092053   4.44e-17   48-169   SH2 domain  
ENSMUSP00000093699   7.67e-26   294-401   SH2 domain  
ENSMUSP00000097547   2.69e-41   144-291   SH2 domain  
ENSMUSP00000098138   2.42e-31   82-186   SH2 domain  
ENSMUSP00000098333   2.83e-31   111-216   SH2 domain  
  2.42e-29   3-106   SH2 domain  
ENSMUSP00000098673   0.000000000000761   59-157   SH2 domain  
ENSMUSP00000098874   0.00000000000047   491-597   SH2 domain  
ENSMUSP00000099403   1.06e-43   576-715   SH2 domain  
ENSMUSP00000099404   6.06e-31   643-757   SH2 domain  
  7e-27   545-660   SH2 domain  
ENSMUSP00000099656   2.83e-39   122-265   SH2 domain  
ENSMUSP00000099842   4.98e-16   421-545   SH2 domain  
ENSMUSP00000100075   1.2e-37   103-246   SH2 domain  
ENSMUSP00000100872   2.83e-39   567-683   SH2 domain  
ENSMUSP00000100965   1.27e-31   75-210   SH2 domain  
ENSMUSP00000101449   0.00000000000000512   273-391   SH2 domain  
ENSMUSP00000101450   0.00000000000000512   273-391   SH2 domain  
ENSMUSP00000102099   9.02e-32   290-397   SH2 domain  
  3.1e-31   54-162   SH2 domain  
ENSMUSP00000102104   1.04e-31   55-196   SH2 domain  
ENSMUSP00000102106   1.56e-31   55-154,184-210   SH2 domain  
ENSMUSP00000102108   0.0000000342   60-116   SH2 domain  
ENSMUSP00000102186   1.26e-28   107-208,257-283   SH2 domain  
ENSMUSP00000102979   8.35e-34   587-702   SH2 domain  
ENSMUSP00000102980   8.35e-33   587-687   SH2 domain  
ENSMUSP00000102981   1.09e-33   585-707   SH2 domain  
ENSMUSP00000103040   6.06e-28   312-417   SH2 domain  
ENSMUSP00000103207   1.28e-25   114-209   SH2 domain  
ENSMUSP00000104063   1.04e-26   10-120,161-187   SH2 domain  
ENSMUSP00000104064   6.87e-23   4-65   SH2 domain  
ENSMUSP00000104088   5.27e-45   233-319   SH2 domain  
ENSMUSP00000104860   1.48e-31   240-387   SH2 domain  
ENSMUSP00000104952   1.75e-18   403-487   SH2 domain  
ENSMUSP00000105088   5.92e-31   643-757   SH2 domain  
  6.87e-27   545-660   SH2 domain  
ENSMUSP00000105155   3.13e-39   151-295   SH2 domain  
ENSMUSP00000105157   3.22e-39   145-289   SH2 domain  
ENSMUSP00000105159   3.22e-39   145-289   SH2 domain  
ENSMUSP00000105179   6.06e-27   335-438   SH2 domain  
  9.29e-27   156-255   SH2 domain  
ENSMUSP00000105189   5.92e-33   91-193   SH2 domain  
ENSMUSP00000105280   2.56e-31   434-547   SH2 domain  
ENSMUSP00000105281   2.56e-31   425-538   SH2 domain  
ENSMUSP00000105423   1.71e-37   116-258   SH2 domain  
ENSMUSP00000105632   4.71e-17   93-214   SH2 domain  
ENSMUSP00000105639   0.000000000000007   370-474,510-535   SH2 domain  
ENSMUSP00000105640   0.000000000000007   370-474,510-535   SH2 domain  
ENSMUSP00000106103   4.98e-25   224-328   SH2 domain  
ENSMUSP00000106106   4.98e-25   224-328   SH2 domain  
ENSMUSP00000106159   1.35e-27   107-226   SH2 domain  
ENSMUSP00000106160   1.48e-27   113-232   SH2 domain  
ENSMUSP00000106161   0.00000313   237-291   SH2 domain  
ENSMUSP00000107655   6.33e-27   14-149   SH2 domain  
ENSMUSP00000107882   5.39e-33   267-413   SH2 domain  
ENSMUSP00000107884   5.52e-33   271-417   SH2 domain  
ENSMUSP00000108103   4.04e-28   3-105   SH2 domain  
  1.1e-25   93-213   SH2 domain  
ENSMUSP00000108491   0.00000000000706   663-728,772-798   SH2 domain  
ENSMUSP00000108495   8.62e-28   200-300   SH2 domain  
ENSMUSP00000108839   1.52e-19   251-348   SH2 domain  
ENSMUSP00000108868   4.31e-24   49-166   SH2 domain  
ENSMUSP00000109224   4.71e-29   214-345   SH2 domain  
ENSMUSP00000109234   1.3e-33   118-246   SH2 domain  
ENSMUSP00000110045   7.81e-28   24-160   SH2 domain  
ENSMUSP00000110115   2.65e-47   256-342   SH2 domain  
ENSMUSP00000110722   5.92e-23   3-100   SH2 domain  
ENSMUSP00000112221   1.29e-27   264-364   SH2 domain  
ENSMUSP00000112473   7.81e-22   321-438   SH2 domain  
ENSMUSP00000112554   0.000000000000484   503-609   SH2 domain  
ENSMUSP00000112914   9.83e-32   146-259   SH2 domain  
  1.88e-31   11-136   SH2 domain  
ENSMUSP00000113043   1.28e-31   76-211   SH2 domain  
ENSMUSP00000113221   1.48e-31   115-250   SH2 domain  
ENSMUSP00000113378   1.2e-26   37-132   SH2 domain  
ENSMUSP00000113576   1.27e-31   75-210   SH2 domain  
ENSMUSP00000113666   1.28e-31   76-211   SH2 domain  
ENSMUSP00000113808   4.98e-24   319-413   SH2 domain  
ENSMUSP00000113852   1.17e-31   146-259   SH2 domain  
  2.15e-31   11-136   SH2 domain  
ENSMUSP00000113926   4.44e-24   329-423   SH2 domain  
ENSMUSP00000114188   1.42e-38   119-244   SH2 domain  
ENSMUSP00000114993   7.14e-27   372-492   SH2 domain  
ENSMUSP00000115029   3.77e-22   2-98   SH2 domain  
ENSMUSP00000115233   1.42e-38   119-244   SH2 domain  
ENSMUSP00000116527   0.000000000555   2-79   SH2 domain  
ENSMUSP00000117099   5.92e-27   322-440   SH2 domain  
ENSMUSP00000117111   1.42e-38   119-244   SH2 domain  
ENSMUSP00000117785   0.000000148   37-70   SH2 domain  
ENSMUSP00000118115   2.56e-22   25-99   SH2 domain  
ENSMUSP00000118131   6.04e-36   119-234   SH2 domain  
ENSMUSP00000118568   0.00000956   43-81   SH2 domain  
ENSMUSP00000118720   0.000000000000862   37-78   SH2 domain  
ENSMUSP00000118764   7.14e-27   372-492   SH2 domain  
ENSMUSP00000119634   0.00000439   36-90   SH2 domain  
ENSMUSP00000119980   3.1e-27   195-314   SH2 domain  
ENSMUSP00000120152   1.75e-43   576-714   SH2 domain  
ENSMUSP00000120732   2.83e-25   64-154   SH2 domain  
ENSMUSP00000121305   1.35e-24   2-86   SH2 domain  
ENSMUSP00000121571   0.000000374   50-93   SH2 domain  
ENSMUSP00000121677   1.62e-43   550-688   SH2 domain  
ENSMUSP00000122065   4.85e-17   9-70   SH2 domain  
ENSMUSP00000122445   3.5e-26   68-155   SH2 domain  
ENSMUSP00000122613   4.58e-25   48-165   SH2 domain  
ENSMUSP00000122646   0.0000000918   2-103   SH2 domain  
ENSMUSP00000123312   0.0000000000000269   14-86   SH2 domain  
ENSMUSP00000123776   8.08e-21   115-232   SH2 domain  
ENSMUSP00000124673   1.48e-20   188-305   SH2 domain  
ENSMUSP00000125121   4.31e-28   2-103   SH2 domain  
ENSMUSP00000125777   2.96e-39   133-276   SH2 domain  
ENSMUSP00000126181   2.42e-37   168-308   SH2 domain  
ENSMUSP00000126694   1.07e-25   612-741   SH2 domain  
ENSMUSP00000126796   2.69e-22   402-513   SH2 domain  
ENSMUSP00000127575   2.29e-26   32-127   SH2 domain  
ENSMUSP00000127715   3.1e-22   1588-1730   SH2 domain  
ENSMUSP00000127901   2.42e-31   82-186   SH2 domain  
ENSMUSP00000127941   3.77e-27   7-105   SH2 domain  
ENSMUSP00000128411   4.55e-40   102-229   SH2 domain  
ENSMUSP00000128473   4.85e-23   283-407   SH2 domain  
ENSMUSP00000128700   0.00000000146   18-75   SH2 domain  
ENSMUSP00000128847   4.85e-27   14-149   SH2 domain  
ENSMUSP00000129124   2.02e-28   4-107   SH2 domain  
  1.06e-25   94-215   SH2 domain  
ENSMUSP00000129146   1.35e-23   1124-1250   SH2 domain  
ENSMUSP00000129149   0.000000000000646   40-77   SH2 domain  
ENSMUSP00000129331   1.2e-26   37-132   SH2 domain  
ENSMUSP00000129397   1.3e-33   118-246   SH2 domain  
ENSMUSP00000129491   2.56e-28   452-562   SH2 domain  
ENSMUSP00000129941   0.0000000000579   59-102   SH2 domain  
ENSMUSP00000130222   2.42e-31   82-186   SH2 domain  
ENSMUSP00000130289   1.99e-40   118-261   SH2 domain  
ENSMUSP00000130713   9.69e-44   565-701   SH2 domain  
ENSMUSP00000131244   3.5e-27   7-105   SH2 domain  
ENSMUSP00000131865   2.69e-31   98-202   SH2 domain  
ENSMUSP00000131875   1.2e-26   37-132   SH2 domain  
ENSMUSP00000132161   2.65e-40   151-295   SH2 domain  
ENSMUSP00000132779   4.85e-23   283-407   SH2 domain  
ENSMUSP00000132883   2.29e-26   20-117   SH2 domain  
ENSMUSP00000133747   0.00000000000000337   3-62   SH2 domain  
ENSMUSP00000133991   9.15e-26   53-174   SH2 domain  
  0.0000000000636   2-66   SH2 domain  
ENSMUSP00000136671   0.000000000000415   447-553   SH2 domain  
ENSMUSP00000137069   3.23e-28   2-103   SH2 domain  
ENSMUSP00000137939   0.00000000000000646   2-48   SH2 domain  
ENSMUSP00000138964   3.77e-18   586-709   SH2 domain  
ENSMUSP00000139746   2.56e-44   569-710   SH2 domain  
ENSMUSP00000139844   5.92e-23   324-467   SH2 domain  
ENSMUSP00000139910   2.15e-26   20-117   SH2 domain  
ENSMUSP00000139988   1.85e-37   137-279   SH2 domain  
ENSMUSP00000139990   2.56e-21   7-84   SH2 domain  
ENSMUSP00000140094   2.69e-22   1419-1562   SH2 domain  
ENSMUSP00000140125   3.04e-36   142-257   SH2 domain  
ENSMUSP00000140254   2.83e-22   1523-1666   SH2 domain  
ENSMUSP00000140256   2.42e-31   2-109   SH2 domain  
ENSMUSP00000140312   2.29e-29   6-108   SH2 domain  
ENSMUSP00000140317   2.96e-22   1567-1709   SH2 domain  
ENSMUSP00000140336   7.27e-28   357-461   SH2 domain  
ENSMUSP00000140482   2.69e-45   63-204   SH2 domain  
ENSMUSP00000140518   2.56e-44   569-710   SH2 domain  
ENSMUSP00000140643   5.92e-38   2-128   SH2 domain  
ENSMUSP00000140771   2.29e-22   1406-1548   SH2 domain  
ENSMUSP00000140875   2.83e-44   569-710   SH2 domain  
ENSMUSP00000141030   1.71e-37   116-258   SH2 domain  
ENSMUSP00000141070   5.25e-27   3-103   SH2 domain  
ENSMUSP00000141125   2.56e-44   569-710   SH2 domain  
ENSMUSP00000141132   2.83e-44   575-716   SH2 domain  
 
Weak hits:
ENSMUSP00000117576   0.00186   37-62   SH2 domain  
ENSMUSP00000123268   0.000639   50-117   SH2 domain  
ENSMUSP00000138624   0.00423   36-70   SH2 domain  

Jump to [ Top of page · Assignment details · Add assignments from individual genomes ]

Add assignments from groups of genomes

View all assignments containing a SH2 domain domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]

Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   151423 151423
No Yes Homo sapiens 76_38 Human 413 378
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 117 107
No Yes Gorilla gorilla 76_3.1 Western gorilla 174 158
No Yes Pongo abelii 76_2 Sumatran orangutan 128 116
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 126 118
No Yes Papio anubis 76 Olive baboon 136 125
No Yes Macaca mulatta 76_1 Rhesus monkey 190 167
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 290 258
No Yes Otolemur garnettii 76_3 Small-eared galago 125 114
No Yes Microcebus murinus 76_1 Gray mouse lemur 95 88
No Yes Rattus norvegicus 76_5.0 Norway rat 141 128
No Yes Mus musculus 76_38 House mouse 281 262
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 109 100
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 120 110
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 130 119
No Yes Cavia porcellus 76_3 Domestic guinea pig 119 109
No Yes Oryctolagus cuniculus 76_2 Rabbit 119 108
No Yes Ochotona princeps 76 American pika 98 89
No Yes Tupaia belangeri 76 Northern tree shrew 84 78
No Yes Sus scrofa 76_10.2 Pig 180 161
No Yes Bos taurus 76_3.1 Cattle 135 123
No Yes Ovis aries 76_3.1 Sheep 136 124
No Yes Vicugna pacos 76_1 Alpaca 62 57
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 113 105
No Yes Mustela putorius furo 76_1.0 Domestic ferret 122 112
No Yes Ailuropoda melanoleuca 76_1 Giant panda 136 122
No Yes Canis familiaris 76_3.1 Dog 146 135
No Yes Felis catus 76_6.2 Domestic cat 126 115
No Yes Equus caballus 76_2 Horse 131 122
No Yes Myotis lucifugus 76_2.0 Little brown bat 119 109
No Yes Pteropus vampyrus 76_1 Large flying fox 117 106
No Yes Sorex araneus 76_1 European shrew 76 69
No Yes Erinaceus europaeus 76 Western European hedgehog 82 74
No Yes Procavia capensis 76_1 Cape rock hyrax 99 90
No Yes Loxodonta africana 76_3 African savanna elephant 157 144
No Yes Echinops telfairi 76 Small Madagascar hedgehog 89 87
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 152 142
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 58 54
No Yes Macropus eugenii 76_1.0 Tammar wallaby 103 94
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 128 116
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 124 114
No Yes Ornithorhynchus anatinus 76_5 Platypus 93 85
No Yes Saccoglossus kowalevskii v3.0   87 82
No Yes Petromyzon marinus 76_7.0 Sea lamprey 49 46
No Yes Meleagris gallopavo 76_2 Turkey 121 108
No Yes Gallus gallus 76_4 Chicken 116 102
No Yes Anas platyrhynchos 76_1.0 Mallard 102 90
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 105 94
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 102 92
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 130 115
No Yes Anolis carolinensis 76_2.0 Green anole 107 97
No Yes Xenopus laevis African clawed frog 221 182
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 133 117
No Yes Latimeria chalumnae 76_1 Coelacanth 149 135
No Yes Lepisosteus oculatus 76 Spotted gar 162 146
No Yes Gadus morhua 76_1 Atlantic cod 145 129
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 186 169
No Yes Takifugu rubripes 76_4 Torafugu 406 344
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 175 157
No Yes Oryzias latipes 76_1 Japanese medaka 151 133
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 150 135
No Yes Poecilia formosa 76 Amazon molly 155 139
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 196 175
No Yes Astyanax mexicanus 76 Mexican tetra 150 140
No Yes Danio rerio 76_9 Zebrafish 264 239
No Yes Oikopleura dioica   33 30
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 107 94
No Yes Ciona intestinalis 76 Vase tunicate 64 57
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 61 55
No Yes Adineta vaga   99 86
No Yes Octopus bimaculoides 280   60 56
No Yes Crassostrea gigas 22 Pacific oyster 62 53
No Yes Lottia gigantea Owl limpet 33 30
No Yes Helobdella robusta   73 69
No Yes Capitella sp. I   47 42
No Yes Danaus plexippus OGS1.0 Monarch butterfly 41 35
No Yes Heliconius melpomene Postman butterfly 30 24
No Yes Bombyx mori Domestic silkworm 35 31
No Yes Nasonia vitripennis Jewel wasp 29 25
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 86 76
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 34 31
No Yes Linepithema humile v1.1 Argentine ant 36 31
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 34 30
No Yes Solenopsis invicta v.2.2.3 Red fire ant 27 23
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 35 31
No Yes Atta cephalotes v1.1   35 31
No Yes Camponotus floridanus v3.3 Florida carpenter ant 35 31
No Yes Lucilia cuprina Australian sheep blowfly 31 26
No Yes Drosophila grimshawi 1.3   41 37
No Yes Drosophila willistoni 1.3   38 34
No Yes Drosophila pseudoobscura 2.13   36 33
No Yes Drosophila persimilis 1.3   36 33
No Yes Drosophila suzukii   38 31
No Yes Drosophila yakuba 1.3   39 34
No Yes Drosophila simulans 1.3   32 29
No Yes Drosophila sechellia 1.3   39 34
No Yes Drosophila melanogaster 76_5 Fruit fly 130 119
No Yes Drosophila erecta 1.3   39 34
No Yes Drosophila ananassae 1.3   40 35
No Yes Drosophila virilis 1.2   40 35
No Yes Drosophila mojavensis 1.3   40 34
No Yes Megaselia scalaris 22   13 12
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 45 40
No Yes Culex pipiens quinquefasciatus Southern house mosquito 38 32
No Yes Anopheles darlingi 22 American malaria mosquito 30 25
No Yes Anopheles gambiae 49_3j African malaria mosquito 45 38
No Yes Tribolium castaneum 3.0 Red flour beetle 41 35
No Yes Pediculus humanus corporis (Early assembly) Human body louse 39 33
No Yes Acyrthosiphon pisum Pea aphid 45 37
No Yes Rhodnius prolixus 22   37 32
No Yes Daphnia pulex Common water flea 22 19
No Yes Strigamia maritima 22   40 36
No Yes Sarcoptes scabiei   26 21
No Yes Tetranychus urticae Two-spotted spider mite 35 29
No Yes Ixodes scapularis (Preliminary) Black-legged tick 38 32
No Yes Pristionchus pacificus   63 61
No Yes Meloidogyne incognita Southern root-knot nematode 31 28
No Yes Meloidogyne hapla   25 23
No Yes Onchocerca volvulus 22   43 39
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 67 59
No Yes Caenorhabditis japonica   66 62
No Yes Caenorhabditis brenneri   93 87
No Yes Caenorhabditis remanei   79 75
No Yes Caenorhabditis elegans 76_235 Roundworm 101 96
No Yes Caenorhabditis briggsae 2   69 65
No Yes Trichinella spiralis 22   32 28
No Yes Hymenolepis microstoma   48 43
No Yes Echinococcus multilocularis   52 46
No Yes Echinococcus granulosus   50 44
No Yes Taenia solium Pork tapeworm 49 43
No Yes Schistosoma mansoni   43 38
No Yes Mnemiopsis leidyi Sea walnut 41 38
No Yes Thelohanellus kitauei   12 12
No Yes Acropora digitifera v1.0   54 47
No Yes Nematostella vectensis 1.0 Starlet sea anemone 30 29
No Yes Hydra vulgaris   47 40
No Yes Amphimedon queenslandica   111 97
No Yes Trichoplax adhaerens   28 27
No Yes Proterospongia sp. ATCC 50818   182 140
No Yes Monosiga brevicollis   152 108
No Yes Sphaeroforma arctica JP610   20 19
No Yes Capsaspora owczarzaki ATCC 30864   38 34
No Yes Conidiobolus coronatus NRRL28638 v1.0   1 1
No Yes Mortierella verticillata NRRL 6337   1 1
No Yes Phycomyces blakesleeanus   1 1
No Yes Rhizopus oryzae RA 99-880   1 1
No Yes Mucor circinelloides   1 1
No Yes Rhizomucor miehei CAU432   1 1
No Yes Malassezia globosa CBS 7966   2 2
No Yes Sporisorium reilianum 22   1 1
No Yes Ustilago maydis   1 1
No Yes Mixia osmundae IAM 14324 v1.0   1 1
No Yes Cronartium quercuum f. sp. fusiforme G11 v1.0   1 1
No Yes Melampsora laricis-populina   1 1
No Yes Rhodotorula graminis WP1 v1.0   1 1
No Yes Sporobolomyces roseus IAM 13481   1 1
No Yes Microbotryum violaceum 22   1 1
No Yes Wallemia sebi v1.0   1 1
No Yes Sphaerobolus stellatus v1.0   1 1
No Yes Piloderma croceum F 1598 v1.0   1 1
No Yes Serpula lacrymans var. lacrymans S7.9   1 1
No Yes Coniophora puteana   1 1
No Yes Hydnomerulius pinastri v2.0   1 1
No Yes Paxillus rubicundulus Ve08.2h10 v1.0   1 1
No Yes Pisolithus microcarpus 441 v1.0   1 1
No Yes Pisolithus tinctorius Marx 270 v1.0   1 1
No Yes Scleroderma citrinum Foug A v1.0   1 1
No Yes Coprinopsis cinerea okayama7 130 v3   2 2
No Yes Pleurotus ostreatus Oyster mushroom 1 1
No Yes Amanita thiersii Skay4041 v1.0   1 1
No Yes Amanita muscaria Koide v1.0 Fly agaric 1 1
No Yes Galerina marginata v1.0   1 1
No Yes Hebeloma cylindrosporum h7 v2.0   1 1
No Yes Laccaria bicolor S238N-H82   1 1
No Yes Agaricus bisporus var. bisporus   1 1
No Yes Schizophyllum commune   1 1
No Yes Stereum hirsutum FP-91666 SS1 v1.0   1 1
No Yes Heterobasidion annosum   1 1
No Yes Gloeophyllum trabeumv1.0   1 1
No Yes Punctularia strigosozonata v1.0   1 1
No Yes Sebacina vermifera MAFF 305830 v1.0   1 1
No Yes Fomitiporia mediterranea v1.0   1 1
No Yes Tulasnella calospora AL13/4D v1.0   1 1
No Yes Postia placenta   1 1
No Yes Wolfiporia cocos MD-104 SS10 v1.0   1 1
No Yes Fomitopsis pinicolav1.0   1 1
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   1 1
No Yes Phanerochaete chrysosporium RP-78 2.1   1 1
No Yes Dichomitus squalens   1 1
No Yes Trametes versicolor v1.0   1 1
No Yes Tremella mesenterica Witches' butter 1 1
No Yes Daldinia eschscholzii EC12 v1.0   1 1
No Yes Apiospora montagnei NRRL 25634 v1.0   1 1
No Yes Magnaporthe poae ATCC 64411 22   1 1
No Yes Magnaporthe grisea 70-15   1 1
No Yes Podospora anserina   1 1
No Yes Sporotrichum thermophile ATCC 42464   1 1
No Yes Thielavia terrestris NRRL 8126   1 1
No Yes Chaetomium globosum CBS 148.51   1 1
No Yes Neurospora tetrasperma   1 1
No Yes Neurospora discreta FGSC 8579   1 1
No Yes Neurospora crassa OR74A   1 1
No Yes Cryphonectria parasitica Chestnut blight fungus 1 1
No Yes Verticillium albo-atrum VaMs.102   1 1
No Yes Verticillium dahliae VdLs.17   1 1
No Yes Acremonium alcalophilumv 1.0   1 1
No Yes Glomerella graminicola 22   1 1
No Yes Fusarium graminearum   1 1
No Yes Nectria haematococca mpVI   1 1
No Yes Fusarium oxysporum f. sp. lycopersici 4286   1 1
No Yes Fusarium verticillioides 7600   1 1
No Yes Trichoderma asperellum CBS 433.97 v1.0   1 1
No Yes Trichoderma atroviride   1 1
No Yes Trichoderma citrinoviride v1.0   1 1
No Yes Trichoderma reesei 1.2   1 1
No Yes Trichoderma virens Gv29-8   1 1
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   1 1
No Yes Trichoderma harzianum CBS 226.95 v1.0   1 1
No Yes Amorphotheca resinae v1.0 Creosote fungus 1 1
No Yes Botrytis cinerea B05.10   1 1
No Yes Sclerotinia sclerotiorum   1 1
No Yes Blumeria graminis 22   1 1
No Yes Didymella exigua CBS 183.55 v1.0   1 1
No Yes Leptosphaeria maculans 22   1 1
No Yes Setosphaeria turcica v1.0   1 1
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   1 1
No Yes Cochliobolus victoriae FI3 v1.0   1 1
No Yes Cochliobolus carbonum 26-R-13 v1.0   1 1
No Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 1 1
No Yes Alternaria brassicicola   1 1
No Yes Cochliobolus lunatus m118 v2.0   1 1
No Yes Pyrenophora teres f. teres 22   1 1
No Yes Pyrenophora tritici-repentis   1 1
No Yes Stagonospora nodorum   1 1
No Yes Mycosphaerella graminicola IPO323   1 1
No Yes Zasmidium cellare ATCC 36951 v1.0   1 1
No Yes Dothistroma septosporum   1 1
No Yes Septoria musiva v1.0   1 1
No Yes Mycosphaerella fijiensis CIRAD86   1 1
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   1 1
No Yes Paracoccidioides brasiliensis Pb18   1 1
No Yes Coccidioides posadasii RMSCC 3488   1 1
No Yes Coccidioides immitis RS   1 1
No Yes Ajellomyces dermatitidis SLH14081   1 1
No Yes Histoplasma capsulatum class NAmI strain WU24   1 1
No Yes Microsporum canis CBS 113480   1 1
No Yes Trichophyton equinum CBS 127.97   1 1
No Yes Trichophyton verrucosum HKI 0517   1 1
No Yes Arthroderma benhamiae CBS 112371   1 1
No Yes Trichophyton tonsurans CBS 112818   1 1
No Yes Trichophyton rubrum CBS 118892   1 1
No Yes Uncinocarpus reesii 1704   1 1
No Yes Aspergillus zonatus v1.0   1 1
No Yes Penicillium chrysogenum Wisconsin 54-1255   1 1
No Yes Penicillium chrysogenum v1.0   1 1
No Yes Aspergillus acidus v1.0   1 1
No Yes Aspergillus fumigatus Af293   1 1
No Yes Aspergillus brasiliensis v1.0   1 1
No Yes Aspergillus nidulans FGSC A4   1 1
No Yes Aspergillus sydowii v1.0   1 1
No Yes Aspergillus versicolor v1.0   1 1
No Yes Aspergillus glaucus   1 1
No Yes Aspergillus carbonarius ITEM 5010   1 1
No Yes Neosartorya fischeri NRRL 181   1 1
No Yes Aspergillus terreus NIH2624   1 1
No Yes Aspergillus tubingensis v1.0   1 1
No Yes Aspergillus wentii v1.0   1 1
No Yes Aspergillus oryzae RIB40   1 1
No Yes Aspergillus niger 22   1 1
No Yes Aspergillus flavus NRRL3357   1 1
No Yes Aspergillus clavatus NRRL 1   1 1
No Yes Penicillium marneffei ATCC 18224   1 1
No Yes Tuber melanosporum Mel28 22   1 1
No Yes Tuber melanosporum Vittad Perigord truffle 1 1
No Yes Hansenula polymorpha v2.0   1 1
No Yes Dekkera bruxellensis CBS 2499 v2.0   1 1
No Yes Pichia membranifaciensv1.0   1 1
No Yes Candida tanzawaensis NRRL Y-17324 v1.0   1 1
No Yes Candida dubliniensis CD36   1 1
No Yes Candida tropicalis MYA-3404   1 1
No Yes Candida parapsilosis   1 1
No Yes Candida albicans SC5314   1 1
No Yes Lodderomyces elongisporus NRRL YB-4239   1 1
No Yes Babjeviella inositovora NRRL Y-12698 v1.0   1 1
No Yes Pichia stipitis CBS 6054   1 1
No Yes Candida guilliermondii ATCC 6260   1 1
No Yes Hyphopichia burtonii NRRL Y-1933 v1.0   1 1
No Yes Debaromyces hansenii   1 1
No Yes Wickerhamomyces anomalus   1 1
No Yes Pichia pastoris GS115   1 1
No Yes Hanseniaspora valbyensis NRRL Y-1626 v1.1   1 1
No Yes Yarrowia lipolytica CLIB122   1 1
No Yes Candida lusitaniae ATCC 42720   1 1
No Yes Metschnikowia bicuspidata NRRL YB-4993 v1.0   1 1
No Yes Vanderwaltozyma polyspora DSM 70294   1 1
No Yes Candida glabrata CBS138   1 1
No Yes Kluyveromyces thermotolerans CBS 6340   1 1
No Yes Lachancea kluyveri   1 1
No Yes Kluyveromyces waltii   1 1
No Yes Ashbya gossypii ATCC 10895   1 1
No Yes Zygosaccharomyces rouxii   1 1
No Yes Saccharomyces mikatae MIT   1 1
No Yes Saccharomyces paradoxus MIT   1 1
No Yes Saccharomyces cerevisiae 76 Baker's yeast 1 1
No Yes Saccharomyces bayanus MIT   1 1
No Yes Kluyveromyces lactis   1 1
No Yes Schizosaccharomyces cryophilus OY26 22   1 1
No Yes Schizosaccharomyces octosporus yFS286   1 1
No Yes Schizosaccharomyces japonicus yFS275   1 1
No Yes Schizosaccharomyces pombe Fission yeast 1 1
No Yes Catenaria anguillulae PL171 v1.0   1 1
No Yes Spizellomyces punctatus DAOM BR117   1 1
No Yes Dictyostelium discoideum   15 15
No Yes Dictyostelium purpureum   15 14
No Yes Entamoeba dispar 1.2   4 4
No Yes Entamoeba invadens 1.2   19 19
No Yes Entamoeba histolytica 1   4 4
No Yes Selaginella moellendorffii   4 4
No Yes Picea abies Norway spruce 1 1
No Yes Eucalyptus grandis v201 Rose gum 3 2
No Yes Theobroma cacao B97-61/B2 v1 Cacao 2 2
No Yes Gossypium raimondii v221   12 9
No Yes Citrus clementina v165   3 3
No Yes Citrus sinensis v154 Sweet orange 4 4
No Yes Thellungiella halophila v173   5 4
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 4 3
No Yes Capsella rubella v183   6 5
No Yes Arabidopsis lyrata Lyrate rockcress 5 4
No Yes Arabidopsis thaliana 10 Thale cress 10 7
No Yes Carica papaya Papaya 2 2
No Yes Medicago truncatula Barrel medic 2 2
No Yes Phaseolus vulgaris v186 French bean 3 3
No Yes Glycine max v109 Soybean 4 4
No Yes Cucumis sativus v122 Cucumber 2 2
No Yes Fragaria vesca Wild strawberry 2 2
No Yes Malus domestica v196 Apple 4 4
No Yes Prunus persica v139 Peach 2 2
No Yes Linum usitatissimum v200 Flax 8 8
No Yes Manihot esculenta v147 Cassava 3 3
No Yes Populus trichocarpa v156 Black cottonwood 5 5
No Yes Vitis vinifera Wine grape 5 5
No Yes Mimulus guttatus v140 Spotted monkey flower 2 2
No Yes Solanum lycopersicum v.2.3 Tomato 2 2
No Yes Solanum tuberosum Potato 3 3
No Yes Actinidia chinensis Hongyang   2 2
No Yes Aquilegia coerulea v195   2 2
No Yes Triticum urartu 22   3 2
No Yes Triticum aestivum 22 Bread wheat 8 6
No Yes Aegilops tauschii 22   3 2
No Yes Brachypodium distachyon Stiff brome 10 6
No Yes Oryza barthii 22 African wild rice 4 3
No Yes Oryza meridionalis 22   5 4
No Yes Oryza glumaepatula 22   4 3
No Yes Oryza glaberrima African rice 3 2
No Yes Oryza punctata 22   7 4
No Yes Oryza nivara 22   6 5
No Yes Oryza brachyantha 22 Malo sina 3 2
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 3 2
No Yes Oryza sativa v193 Rice 3 2
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 6 4
No Yes Panicum virgatum v202 Switchgrass 6 4
No Yes Setaria italica v164 Foxtail millet 3 2
No Yes Zea mays subsp. mays Maize 7 5
No Yes Zea mays v181 Maize 7 5
No Yes Sorghum bicolor Sorghum 3 2
No Yes Musa balbisiana Balbis banana 5 3
No Yes Musa acuminata 22 Wild Malaysian banana 5 3
No Yes Amborella trichopoda 22   3 2
No Yes Physcomitrella patens   3 3
No Yes Coccomyxa subellipsoidea sp. C-169 v2   3 3
No Yes Asterochloris sp. Cgr/DA1pho v1.0   2 2
No Yes Chlorella vulgaris   2 2
No Yes Volvox carteri f. nagariensis   1 1
No Yes Volvox carteri v199   1 1
No Yes Chlamydomonas reinhardtii 4.0   1 1
No Yes Ostreococcus tauri   1 1
No Yes Bathycoccus prasinos   1 1
No Yes Micromonas pusilla CCMP1545 v3.0   1 1
No Yes Thecamonas trahens ATCC 50062   9 9
No Yes Bigelowiella natans CCMP2755 22   3 2
No Yes Cyanophora paradoxa   4 4
No Yes Ectocarpus siliculosus   7 7
No Yes Aureococcus anophagefferens   1 1
No Yes Albugo laibachii 22   3 3
No Yes Pythium iwayamai DAOM BR242034 22   4 4
No Yes Pythium arrhenomanes ATCC 12531 22   4 4
No Yes Pythium ultimum v1.7-2   5 5
No Yes Pythium aphanidermatum DAOM BR444 22   4 4
No Yes Pythium irregulare DAOM BR486 22   5 5
No Yes Pythium vexans DAOM BR484 22   6 6
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 3 3
No Yes Phytophthora sojae 1.1   4 4
No Yes Phytophthora infestans T30-4   5 5
No Yes Phytophthora capsici   3 3
No Yes Hyaloperonospora arabidopsidis 22   1 1
No Yes Phaeodactylum tricornutumCCAP 1055/1   2 2
No Yes Fragilariopsis cylindrus   1 1
No Yes Thalassiosira pseudonana CCMP1335   1 1
No Yes Paramecium tetraurelia   1 1
No Yes Tetrahymena thermophila SB210 1   1 1
No Yes Naegleria gruberi   4 4
No Yes Trichomonas vaginalis   2 2
No Yes Guillardia theta CCMP2712 v1.0   3 3
No Yes Nostoc punctiforme PCC 73102   1 1
No Yes Simkania negevensis Z   1 1
No Yes Novosphingobium aromaticivorans DSM 12444   1 1
No Yes Legionella longbeachae NSW150   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 198 178
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 95 86
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 51 44
No Yes Ascaris suum Victoria/Ghent Pig roundworm 66 62
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 88 84
No Yes Cryptococcus neoformans var. grubii H99   1 1
No Yes Cryptococcus neoformans B-3501A   1 1
No Yes Cryptococcus neoformans JEC21   1 1
No Yes Paracoccidioides brasiliensis Pb01   1 1
No Yes Paracoccidioides brasiliensis Pb03   1 1
No Yes Coccidioides posadasii str. Silveira   1 1
No Yes Coccidioides immitis RMSCC 3703   1 1
No Yes Coccidioides immitis RMSCC 2394   1 1
No Yes Coccidioides immitis H538.4   1 1
No Yes Ajellomyces dermatitidis ER-3   1 1
No Yes Histoplasma capsulatum H88   1 1
No Yes Histoplasma capsulatum G186AR   1 1
No Yes Aspergillus fumigatus A1163   1 1
No Yes Candida albicans WO-1   1 1
No Yes Saccharomyces cerevisiae UC5   1 1
No Yes Saccharomyces cerevisiae PW5   1 1
No Yes Saccharomyces cerevisiae CLIB324   1 1
No Yes Saccharomyces cerevisiae CBS7960   1 1
No Yes Saccharomyces cerevisiae YJM269   1 1
No Yes Saccharomyces cerevisiae T7   1 1
No Yes Saccharomyces cerevisiae FostersB   1 1
No Yes Saccharomyces cerevisiae FostersO   1 1
No Yes Saccharomyces cerevisiae LalvinQA23   1 1
No Yes Saccharomyces cerevisiae AWRI796   1 1
No Yes Saccharomyces cerevisiae Sigma1278b   1 1
No Yes Saccharomyces cerevisiae W303   1 1
No Yes Saccharomyces cerevisiae JAY291   1 1
No Yes Saccharomyces cerevisiae CLIB215   1 1
No Yes Saccharomyces cerevisiae YJM789   1 1
No Yes Saccharomyces cerevisiae YJM789   1 1
No Yes Saccharomyces cerevisiae RM11-1a   1 1
No Yes Saccharomyces cerevisiae RM11-1a   1 1
No Yes Saccharomyces cerevisiae SGD (SGD) Baker's yeast 1 1
No Yes Schizosaccharomyces pombe 972h-   1 1
No Yes Batrachochytrium dendrobatidis JEL423   1 1
No Yes Batrachochytrium dendrobatidis JAM81   1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 2 2
No Yes Hordeum vulgare 22 Domesticated barley 6 4
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 3 2
No Yes Homo sapiens 75_37 (old version GRC) Human 466 420
No Yes Homo sapiens (NCBI version) Human 224 203
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 123 113
No Yes Heliconius numata (Incomplete)   5 5
No Yes Loa loa v3.3 (Request) Eye worm 52 47
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 50 47
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 43 39
No Yes Encephalitozoon intestinalis (endoparasite)   1 1
No Yes Encephalitozoon cuniculi (endoparasite)   1 1
No Yes Lotus japonicus (Early assembly)   3 3
No Yes Malus x domestica (Duplicate) Apple 4 4
No Yes Ricinus communis (Early assembly) Castor bean 2 2
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   4 4
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 2 2
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 2 2
No Yes Phoenix dactylifera (Early draft) Date palm 2 2
No Yes Homo sapiens 69_37 Human 125 115
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 114 104
No Yes Gorilla gorilla 69_3.1 Western gorilla 123 113
No Yes Pongo abelii 69_2 Sumatran orangutan 118 108
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 114 105
No Yes Macaca mulatta 69_1 Rhesus monkey 118 106
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 126 115
No Yes Otolemur garnettii 69_3 Small-eared galago 120 110
No Yes Microcebus murinus 69_1 Gray mouse lemur 95 88
No Yes Rattus norvegicus 69_3.4 Norway rat 118 107
No Yes Mus musculus 69_38 House mouse 124 114
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 108 99
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 113 104
No Yes Cavia porcellus 69_3 Domestic guinea pig 116 106
No Yes Oryctolagus cuniculus 69_2 Rabbit 108 99
No Yes Ochotona princeps 69 American pika 98 89
No Yes Tupaia belangeri 69 Northern tree shrew 84 78
No Yes Sus scrofa 69_10.2 Pig 131 117
No Yes Bos taurus 69_3.1 Cattle 125 113
No Yes Vicugna pacos 69_1 Alpaca 61 56
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 112 104
No Yes Mustela putorius furo 69_1.0 Domestic ferret 121 111
No Yes Ailuropoda melanoleuca 69_1 Giant panda 119 107
No Yes Canis familiaris 69_3.1 Dog 119 109
No Yes Felis catus 69 Domestic cat 101 92
No Yes Equus caballus 69_2 Horse 115 106
No Yes Myotis lucifugus 69_2.0 Little brown bat 117 107
No Yes Pteropus vampyrus 69_1 Large flying fox 116 105
No Yes Sorex araneus 69_1 European shrew 76 69
No Yes Erinaceus europaeus 69 Western European hedgehog 82 74
No Yes Procavia capensis 69_1 Cape rock hyrax 98 89
No Yes Loxodonta africana 69_3 African savanna elephant 121 111
No Yes Echinops telfairi 69 Small Madagascar hedgehog 89 87
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 77 70
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 57 53
No Yes Macropus eugenii 69_1.0 Tammar wallaby 102 93
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 112 101
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 118 108
No Yes Ornithorhynchus anatinus 69_5 Platypus 87 79
No Yes Petromyzon marinus 69_7.0 Sea lamprey 49 46
No Yes Meleagris gallopavo 69_2 Turkey 99 88
No Yes Gallus gallus 69_2 Chicken 99 86
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 102 91
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 105 93
No Yes Anolis carolinensis 69_2.0 Green anole 105 95
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 116 102
No Yes Latimeria chalumnae 69_1 Coelacanth 119 108
No Yes Gadus morhua 69_1 Atlantic cod 128 115
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 149 135
No Yes Takifugu rubripes 69_4 Torafugu 139 121
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 142 127
No Yes Oryzias latipes 69_1 Japanese medaka 122 108
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 147 132
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 148 132
No Yes Danio rerio 69_9 Zebrafish 155 141
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 37 33
No Yes Ciona intestinalis 69 Vase tunicate 55 49
No Yes Drosophila melanogaster 69_5 Fruit fly 38 33
No Yes Caenorhabditis elegans 69_215 Roundworm 70 66
No Yes Saccharomyces cerevisiae 69_4 Baker's yeast 1 1
No Yes Arabidopsis thaliana 10 Thale cress 4 3
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   1 1
No Yes NCBI 2017_08 genome   70595 63866
No Yes Protozoadb 2010_08 (Protozoadb)   20 20
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   2 1
No Yes STRING v9.0.5 (STRING)   4341 3903
No Yes Uniprot 2018_03 genome   41145 36814
No Yes Global Ocean Sampling Expedition (GOS)   26 23
No Yes NCBI viral sequences (Viral)   7 7
No Yes PDB chains (SCOP 1.75) (PDB)   94 90
No Yes Protein Data Bank (all PDB sequenc)   810 734
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   1719 1719
No Yes TargetDB (Targets)   260 245
No Yes UniProt viral sequences (Viral)   52 52

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

Please send feedback, comments or questions to superfamily@cs.bris.ac.uk or use the feedback form.

© Copyright 2013 The SUPERFAMILY authors and Julian Gough.