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  Home > Genomes > Loxodonta africana 69_3 > Complement control module/SCR domain domains


Complement control module/SCR domain superfamily domain assignments
in
Loxodonta africana 69_3

Assignment details

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Loxodonta africana 69_3 has 293 significant domains in 55 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSLAFP00000000003   4.86e-16   72-145   Complement control module/SCR domain  
  0.00000000000000126   136-202   Complement control module/SCR domain  
  0.00000000000000375   193-259   Complement control module/SCR domain  
  0.000000000109   10-82   Complement control module/SCR domain  
ENSLAFP00000000682   7.6e-22   273-339   Complement control module/SCR domain  
  0.0000000000000106   215-274   Complement control module/SCR domain  
  0.0000000000000459   153-209   Complement control module/SCR domain  
  0.00000000113   90-146   Complement control module/SCR domain  
  0.00000111   27-92   Complement control module/SCR domain  
ENSLAFP00000000993   0.000000000000236   143-214   Complement control module/SCR domain  
  0.0000000000612   204-263   Complement control module/SCR domain  
ENSLAFP00000001222   4.59e-21   2884-2955   Complement control module/SCR domain  
  1.35e-18   2529-2593   Complement control module/SCR domain  
  2.83e-18   2586-2654   Complement control module/SCR domain  
  5.94e-18   2645-2711   Complement control module/SCR domain  
  1.15e-17   2825-2895   Complement control module/SCR domain  
  3.75e-17   2470-2539   Complement control module/SCR domain  
  4.31e-17   2768-2836   Complement control module/SCR domain  
  6.61e-17   2944-3013   Complement control module/SCR domain  
  0.00000000000000175   1936-2005   Complement control module/SCR domain  
  0.00000000000000181   2343-2410   Complement control module/SCR domain  
  0.00000000000000236   3003-3059   Complement control module/SCR domain  
  0.0000000000000025   2700-2761   Complement control module/SCR domain  
  0.0000000000000025   3064-3132   Complement control module/SCR domain  
  0.00000000000000625   198-269   Complement control module/SCR domain  
  0.0000000000000236   2281-2354   Complement control module/SCR domain  
  0.0000000000000297   722-782   Complement control module/SCR domain  
  0.0000000000000405   1240-1304   Complement control module/SCR domain  
  0.0000000000000405   1764-1826   Complement control module/SCR domain  
  0.0000000000000917   1413-1478   Complement control module/SCR domain  
  0.000000000000128   376-435   Complement control module/SCR domain  
  0.000000000000292   1590-1656   Complement control module/SCR domain  
  0.000000000000594   895-957   Complement control module/SCR domain  
  0.00000000000113   1066-1128   Complement control module/SCR domain  
  0.00000000000337   547-615   Complement control module/SCR domain  
  0.00000000000347   2415-2477   Complement control module/SCR domain  
  0.00000000000417   3123-3181   Complement control module/SCR domain  
  0.0000000000634   2107-2170   Complement control module/SCR domain  
ENSLAFP00000001569   0.00000000000000324   129-190   Complement control module/SCR domain  
  0.000000000000108   78-140   Complement control module/SCR domain  
  0.00000000000598   20-85   Complement control module/SCR domain  
ENSLAFP00000002138   8.48e-20   2231-2299   Complement control module/SCR domain  
  0.00000000000000103   2288-2344   Complement control module/SCR domain  
  0.00000000000000375   2045-2112   Complement control module/SCR domain  
  0.00000000000000903   79-142   Complement control module/SCR domain  
  0.00000000000000987   942-1006   Complement control module/SCR domain  
  0.0000000000000236   249-317   Complement control module/SCR domain  
  0.00000000000005   2171-2235   Complement control module/SCR domain  
  0.0000000000000514   1638-1707   Complement control module/SCR domain  
  0.0000000000000584   1116-1180   Complement control module/SCR domain  
  0.0000000000000931   424-484   Complement control module/SCR domain  
  0.000000000000133   767-837   Complement control module/SCR domain  
  0.000000000000181   1292-1355   Complement control module/SCR domain  
  0.000000000000306   1466-1529   Complement control module/SCR domain  
  0.00000000000202   1983-2050   Complement control module/SCR domain  
  0.0000000000139   597-657   Complement control module/SCR domain  
  0.0000000000567   1809-1873   Complement control module/SCR domain  
  0.0000000000639   2108-2183   Complement control module/SCR domain  
ENSLAFP00000002275   0.000000000125   3285-3343   Complement control module/SCR domain  
ENSLAFP00000002459   1.35e-18   2163-2231   Complement control module/SCR domain  
  2.02e-18   2519-2590   Complement control module/SCR domain  
  9.17e-18   2579-2648   Complement control module/SCR domain  
  2.08e-17   2403-2471   Complement control module/SCR domain  
  1.13e-16   2220-2287   Complement control module/SCR domain  
  3.75e-16   2702-2770   Complement control module/SCR domain  
  8.06e-16   2460-2530   Complement control module/SCR domain  
  0.00000000000000195   1911-1984   Complement control module/SCR domain  
  0.00000000000000526   1567-1635   Complement control module/SCR domain  
  0.0000000000000195   2094-2156   Complement control module/SCR domain  
  0.0000000000000216   1974-2041   Complement control module/SCR domain  
  0.0000000000000351   1394-1456   Complement control module/SCR domain  
  0.0000000000000375   2280-2347   Complement control module/SCR domain  
  0.0000000000000625   2637-2698   Complement control module/SCR domain  
  0.000000000000153   2336-2396   Complement control module/SCR domain  
  0.000000000000189   1043-1110   Complement control module/SCR domain  
  0.000000000000195   352-412   Complement control module/SCR domain  
  0.000000000000229   695-758   Complement control module/SCR domain  
  0.000000000000292   870-933   Complement control module/SCR domain  
  0.000000000000459   6-68   Complement control module/SCR domain  
  0.00000000000236   1220-1283   Complement control module/SCR domain  
  0.00000000000417   177-245   Complement control module/SCR domain  
  0.00000000000513   1737-1801   Complement control module/SCR domain  
  0.00000000000681   2046-2111   Complement control module/SCR domain  
  0.00000000000863   525-587   Complement control module/SCR domain  
  0.0000000000104   2761-2819   Complement control module/SCR domain  
ENSLAFP00000002464   0.00000000000000862   270-328   Complement control module/SCR domain  
  0.0000000000000264   123-185   Complement control module/SCR domain  
  0.000000000653   86-138   Complement control module/SCR domain  
ENSLAFP00000002816   0.000000000148   496-559   Complement control module/SCR domain  
  0.000000526   550-606   Complement control module/SCR domain  
ENSLAFP00000003113   0.00000000000361   624-693   Complement control module/SCR domain  
ENSLAFP00000003117   0.00000000000000621   149-214   Complement control module/SCR domain  
  0.0000000000328   89-164   Complement control module/SCR domain  
  0.000000000328   29-94   Complement control module/SCR domain  
ENSLAFP00000003591   1.32e-21   579-657   Complement control module/SCR domain  
  1.75e-19   454-525   Complement control module/SCR domain  
  0.0000000000000144   207-269   Complement control module/SCR domain  
  0.0000000000000904   334-390   Complement control module/SCR domain  
  0.00000000000524   397-456   Complement control module/SCR domain  
  0.0000000000097   274-328   Complement control module/SCR domain  
  0.000000000328   520-576   Complement control module/SCR domain  
  0.0000000109   155-215   Complement control module/SCR domain  
  0.0000000175   92-149   Complement control module/SCR domain  
  0.0000117   40-96   Complement control module/SCR domain  
ENSLAFP00000003900   1.81e-16   79-148   Complement control module/SCR domain  
ENSLAFP00000004287   0.000000000000306   178-237   Complement control module/SCR domain  
  0.000000000243   241-302   Complement control module/SCR domain  
  0.00000000607   54-110   Complement control module/SCR domain  
  0.0000000675   115-176   Complement control module/SCR domain  
ENSLAFP00000005330   0.00000000000000612   367-437   Complement control module/SCR domain  
  0.00000000000025   301-370   Complement control module/SCR domain  
ENSLAFP00000006026   0.0000000000000108   253-319   Complement control module/SCR domain  
  0.00000000000167   198-263   Complement control module/SCR domain  
ENSLAFP00000006032   0.00000000000000542   249-314   Complement control module/SCR domain  
  0.0000000000000195   373-446   Complement control module/SCR domain  
  0.0000000000000208   309-383   Complement control module/SCR domain  
  0.0000000000000459   430-497   Complement control module/SCR domain  
  0.000000000000459   495-556   Complement control module/SCR domain  
  0.0000000000208   187-252   Complement control module/SCR domain  
ENSLAFP00000006663   3.41e-16   76-148   Complement control module/SCR domain  
  4.32e-16   138-200   Complement control module/SCR domain  
  0.00000000000000681   199-264   Complement control module/SCR domain  
  0.000000000000189   446-504   Complement control module/SCR domain  
  0.0000000000197   15-80   Complement control module/SCR domain  
  0.00000000216   392-452   Complement control module/SCR domain  
  0.00000000629   263-327   Complement control module/SCR domain  
ENSLAFP00000008025   9.73e-18   513-582   Complement control module/SCR domain  
  1.53e-16   141-212   Complement control module/SCR domain  
  3.61e-16   837-903   Complement control module/SCR domain  
  4.17e-16   262-331   Complement control module/SCR domain  
  0.00000000000000148   202-273   Complement control module/SCR domain  
  0.00000000000000742   397-460   Complement control module/SCR domain  
  0.0000000000000117   337-407   Complement control module/SCR domain  
  0.0000000000000514   704-765   Complement control module/SCR domain  
  0.000000000000153   588-653   Complement control module/SCR domain  
  0.000000000000222   890-955   Complement control module/SCR domain  
  0.000000000000264   76-135   Complement control module/SCR domain  
  0.000000000000526   8-70   Complement control module/SCR domain  
  0.00000000000431   772-831   Complement control module/SCR domain  
  0.000000778   669-715   Complement control module/SCR domain  
  0.00000769   471-524   Complement control module/SCR domain  
ENSLAFP00000008276   0.00000000000361   2046-2106   Complement control module/SCR domain  
ENSLAFP00000009052   0.000000000000129   303-373   Complement control module/SCR domain  
ENSLAFP00000009144   0.0000000000000181   719-776   Complement control module/SCR domain  
ENSLAFP00000009481   0.00000000000000417   116-178   Complement control module/SCR domain  
  0.0000000000000306   263-322   Complement control module/SCR domain  
  0.0000000278   78-126   Complement control module/SCR domain  
ENSLAFP00000009596   0.000000000337   61-123   Complement control module/SCR domain  
ENSLAFP00000009598   0.00000133   1212-1251   Complement control module/SCR domain  
  0.0000639   1173-1218   Complement control module/SCR domain  
  0.0374   1101-1155   Complement control module/SCR domain  
ENSLAFP00000010285   0.000000000128   9-70   Complement control module/SCR domain  
ENSLAFP00000010571   0.0000000000653   582-642   Complement control module/SCR domain  
ENSLAFP00000010984   0.000000000000702   2-68   Complement control module/SCR domain  
ENSLAFP00000011744   2.49e-20   1176-1237   Complement control module/SCR domain  
  0.0000000000000264   144-215   Complement control module/SCR domain  
  0.00000000000027   1118-1177   Complement control module/SCR domain  
  0.000000000000526   85-146   Complement control module/SCR domain  
  0.000000000000863   689-744   Complement control module/SCR domain  
  0.00000000000116   1049-1111   Complement control module/SCR domain  
  0.0000000000197   629-686   Complement control module/SCR domain  
  0.0000000000249   562-624   Complement control module/SCR domain  
  0.0000000000288   932-993   Complement control module/SCR domain  
  0.00000000031   870-944   Complement control module/SCR domain  
  0.00000000059   205-267   Complement control module/SCR domain  
  0.000000000737   809-864   Complement control module/SCR domain  
  0.000000000852   997-1059   Complement control module/SCR domain  
  0.00000000183   508-572   Complement control module/SCR domain  
  0.00000000306   262-324   Complement control module/SCR domain  
  0.00000000459   393-450   Complement control module/SCR domain  
  0.0000000102   455-514   Complement control module/SCR domain  
  0.0000000661   24-89   Complement control module/SCR domain  
  0.0000288   318-384   Complement control module/SCR domain  
  0.00127   752-803   Complement control module/SCR domain  
ENSLAFP00000011907   0.0000000000000917   83-143   Complement control module/SCR domain  
  0.00000000000542   149-205   Complement control module/SCR domain  
  0.00000222   23-91   Complement control module/SCR domain  
ENSLAFP00000011911   0.000000000000167   159-215   Complement control module/SCR domain  
  0.000000000000236   92-153   Complement control module/SCR domain  
  0.0000306   39-79   Complement control module/SCR domain  
ENSLAFP00000012178   4.45e-16   254-320   Complement control module/SCR domain  
  0.00000000000000292   440-506   Complement control module/SCR domain  
  0.00000000000000625   378-444   Complement control module/SCR domain  
  0.00000000000000806   502-567   Complement control module/SCR domain  
  0.0000000000000528   199-265   Complement control module/SCR domain  
  0.0000000000000584   635-700   Complement control module/SCR domain  
  0.000000000000153   580-645   Complement control module/SCR domain  
  0.00000000000107   315-382   Complement control module/SCR domain  
ENSLAFP00000012428   0.000000000000292   376-455   Complement control module/SCR domain  
  0.000000000005   308-379   Complement control module/SCR domain  
ENSLAFP00000012866   0.00000000000107   1151-1211   Complement control module/SCR domain  
ENSLAFP00000013262   0.000000000264   1272-1335   Complement control module/SCR domain  
  0.000000005   1146-1216   Complement control module/SCR domain  
  0.00000000695   1208-1280   Complement control module/SCR domain  
  0.00000306   1077-1150   Complement control module/SCR domain  
ENSLAFP00000013340   1.81e-19   1635-1704   Complement control module/SCR domain  
  1.81e-18   1336-1405   Complement control module/SCR domain  
  3.06e-18   2264-2333   Complement control module/SCR domain  
  5.14e-18   1452-1520   Complement control module/SCR domain  
  7.78e-18   2322-2391   Complement control module/SCR domain  
  2.22e-17   1870-1940   Complement control module/SCR domain  
  2.36e-17   2206-2275   Complement control module/SCR domain  
  2.64e-17   2730-2799   Complement control module/SCR domain  
  4.17e-17   1278-1347   Complement control module/SCR domain  
  5.28e-17   2380-2449   Complement control module/SCR domain  
  1.95e-16   2045-2112   Complement control module/SCR domain  
  2.92e-16   1754-1822   Complement control module/SCR domain  
  3.89e-16   2160-2217   Complement control module/SCR domain  
  4.73e-16   1394-1459   Complement control module/SCR domain  
  5.42e-16   2553-2618   Complement control module/SCR domain  
  0.00000000000000107   1929-1998   Complement control module/SCR domain  
  0.00000000000000133   1173-1236   Complement control module/SCR domain  
  0.0000000000000025   2907-2966   Complement control module/SCR domain  
  0.00000000000000473   1988-2050   Complement control module/SCR domain  
  0.0000000000000167   2790-2854   Complement control module/SCR domain  
  0.0000000000000834   1118-1190   Complement control module/SCR domain  
  0.0000000000000848   2439-2501   Complement control module/SCR domain  
  0.000000000000167   2498-2564   Complement control module/SCR domain  
  0.00000000000195   1689-1747   Complement control module/SCR domain  
  0.00000000000222   1813-1881   Complement control module/SCR domain  
  0.00000000000361   2612-2675   Complement control module/SCR domain  
  0.00000000000361   2848-2916   Complement control module/SCR domain  
  0.00000000000431   1509-1577   Complement control module/SCR domain  
  0.0000000000208   1573-1646   Complement control module/SCR domain  
  0.00000000138   2672-2735   Complement control module/SCR domain  
  0.0000000723   3-65   Complement control module/SCR domain  
  0.000602   233-293   Complement control module/SCR domain  
ENSLAFP00000013725   0.00000000109   34-96   Complement control module/SCR domain  
ENSLAFP00000014637   0.00000000347   76-132   Complement control module/SCR domain  
  0.00000361   29-76   Complement control module/SCR domain  
ENSLAFP00000014838   0.0000000000000931   280-350   Complement control module/SCR domain  
ENSLAFP00000015950   0.0000000000000162   5-65   Complement control module/SCR domain  
ENSLAFP00000017143   0.0000000000903   808-867   Complement control module/SCR domain  
ENSLAFP00000018192   3.1e-21   265-346   Complement control module/SCR domain  
  0.00000000000000957   84-152   Complement control module/SCR domain  
  0.00000000000616   204-262   Complement control module/SCR domain  
  0.0000000000485   22-94   Complement control module/SCR domain  
  0.000603   145-199   Complement control module/SCR domain  
ENSLAFP00000018473   0.00000000347   76-132   Complement control module/SCR domain  
  0.00000361   29-76   Complement control module/SCR domain  
ENSLAFP00000018719   0.0000000000000148   749-814   Complement control module/SCR domain  
  0.000000000000709   808-870   Complement control module/SCR domain  
  0.00000000000121   876-935   Complement control module/SCR domain  
  0.00000000000486   396-457   Complement control module/SCR domain  
  0.00000000117   571-635   Complement control module/SCR domain  
ENSLAFP00000020073   0.00000000000000653   30-92   Complement control module/SCR domain  
  0.00000000000264   87-144   Complement control module/SCR domain  
ENSLAFP00000020407   0.00000000000000334   289-351   Complement control module/SCR domain  
  0.000000000000216   707-768   Complement control module/SCR domain  
  0.00000000000473   775-833   Complement control module/SCR domain  
  0.0000000341   464-529   Complement control module/SCR domain  
  0.0000236   643-694   Complement control module/SCR domain  
ENSLAFP00000022232   3.1e-21   265-346   Complement control module/SCR domain  
  0.0000000000000433   84-146   Complement control module/SCR domain  
  0.00000000000616   204-262   Complement control module/SCR domain  
  0.0000000000459   22-94   Complement control module/SCR domain  
  0.00144   153-199   Complement control module/SCR domain  
ENSLAFP00000022313   0.00000000000000202   710-775   Complement control module/SCR domain  
  0.000000000000891   769-831   Complement control module/SCR domain  
  0.00000000000445   356-421   Complement control module/SCR domain  
  0.00000000000813   836-896   Complement control module/SCR domain  
  0.000000000129   532-596   Complement control module/SCR domain  
ENSLAFP00000023840   9.96e-21   554-616   Complement control module/SCR domain  
  0.0000000000000223   496-555   Complement control module/SCR domain  
  0.000000000000243   244-299   Complement control module/SCR domain  
  0.000000000000486   184-241   Complement control module/SCR domain  
  0.00000000000603   117-179   Complement control module/SCR domain  
  0.000000000113   364-419   Complement control module/SCR domain  
  0.000000000249   423-489   Complement control module/SCR domain  
  0.000000000734   63-127   Complement control module/SCR domain  
  0.00000017   10-67   Complement control module/SCR domain  
  0.0229   307-358   Complement control module/SCR domain  
ENSLAFP00000024337   0.000000000116   117-178   Complement control module/SCR domain  
  0.0000000416   16-75   Complement control module/SCR domain  
ENSLAFP00000025801   4.32e-18   63-136   Complement control module/SCR domain  
  1.31e-16   125-193   Complement control module/SCR domain  
  0.000000000000124   193-254   Complement control module/SCR domain  
  0.00000000000459   256-316   Complement control module/SCR domain  
  0.000000000526   2-73   Complement control module/SCR domain  
ENSLAFP00000028772   0.0000000000361   218-274   Complement control module/SCR domain  
  0.000000000852   276-316   Complement control module/SCR domain  
  0.00000000567   157-212   Complement control module/SCR domain  
  0.0000283   29-92   Complement control module/SCR domain  
  0.0000567   118-148   Complement control module/SCR domain  
ENSLAFP00000028804   7.6e-19   334-395   Complement control module/SCR domain  
  0.00000000000104   276-335   Complement control module/SCR domain  
  0.00000000000567   146-225   Complement control module/SCR domain  
  0.0000000000107   209-266   Complement control module/SCR domain  
  0.00000000229   91-143   Complement control module/SCR domain  
  0.0000222   20-83   Complement control module/SCR domain  
ENSLAFP00000029277   3.34e-19   127-195   Complement control module/SCR domain  
  1.48e-18   243-314   Complement control module/SCR domain  
  2.56e-17   303-372   Complement control module/SCR domain  
  9.04e-17   184-254   Complement control module/SCR domain  
  5e-16   4-72   Complement control module/SCR domain  
  5.13e-16   423-491   Complement control module/SCR domain  
  5.28e-16   361-418   Complement control module/SCR domain  
  0.00000000000000375   59-121   Complement control module/SCR domain  
  0.00000000000751   482-540   Complement control module/SCR domain  

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Select to display   Genome       Domains   Proteins
No Yes ALL   312829 312829
No Yes Homo sapiens 76_38 Human 1435 333
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 325 57
No Yes Gorilla gorilla 76_3.1 Western gorilla 448 88
No Yes Pongo abelii 76_2 Sumatran orangutan 317 56
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 308 50
No Yes Papio anubis 76 Olive baboon 302 59
No Yes Macaca mulatta 76_1 Rhesus monkey 637 126
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 608 130
No Yes Otolemur garnettii 76_3 Small-eared galago 278 49
No Yes Microcebus murinus 76_1 Gray mouse lemur 206 43
No Yes Rattus norvegicus 76_5.0 Norway rat 345 72
No Yes Mus musculus 76_38 House mouse 583 113
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 212 40
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 244 48
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 276 49
No Yes Cavia porcellus 76_3 Domestic guinea pig 316 64
No Yes Oryctolagus cuniculus 76_2 Rabbit 296 54
No Yes Ochotona princeps 76 American pika 235 42
No Yes Tupaia belangeri 76 Northern tree shrew 223 41
No Yes Sus scrofa 76_10.2 Pig 330 84
No Yes Bos taurus 76_3.1 Cattle 367 70
No Yes Ovis aries 76_3.1 Sheep 384 65
No Yes Vicugna pacos 76_1 Alpaca 237 37
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 248 48
No Yes Mustela putorius furo 76_1.0 Domestic ferret 338 59
No Yes Ailuropoda melanoleuca 76_1 Giant panda 376 68
No Yes Canis familiaris 76_3.1 Dog 524 79
No Yes Felis catus 76_6.2 Domestic cat 293 60
No Yes Equus caballus 76_2 Horse 670 77
No Yes Myotis lucifugus 76_2.0 Little brown bat 436 79
No Yes Pteropus vampyrus 76_1 Large flying fox 266 48
No Yes Sorex araneus 76_1 European shrew 180 32
No Yes Erinaceus europaeus 76 Western European hedgehog 185 40
No Yes Procavia capensis 76_1 Cape rock hyrax 200 44
No Yes Loxodonta africana 76_3 African savanna elephant 368 73
No Yes Echinops telfairi 76 Small Madagascar hedgehog 224 40
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 398 71
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 188 30
No Yes Macropus eugenii 76_1.0 Tammar wallaby 189 42
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 281 61
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 292 53
No Yes Ornithorhynchus anatinus 76_5 Platypus 317 73
No Yes Saccoglossus kowalevskii v3.0   436 89
No Yes Petromyzon marinus 76_7.0 Sea lamprey 116 22
No Yes Meleagris gallopavo 76_2 Turkey 235 53
No Yes Gallus gallus 76_4 Chicken 257 40
No Yes Anas platyrhynchos 76_1.0 Mallard 260 45
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 255 50
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 243 46
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 320 56
No Yes Anolis carolinensis 76_2.0 Green anole 288 48
No Yes Xenopus laevis African clawed frog 169 68
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 282 60
No Yes Latimeria chalumnae 76_1 Coelacanth 210 59
No Yes Lepisosteus oculatus 76 Spotted gar 357 61
No Yes Gadus morhua 76_1 Atlantic cod 209 51
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 385 69
No Yes Takifugu rubripes 76_4 Torafugu 1131 209
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 343 72
No Yes Oryzias latipes 76_1 Japanese medaka 280 61
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 267 52
No Yes Poecilia formosa 76 Amazon molly 273 52
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 372 77
No Yes Astyanax mexicanus 76 Mexican tetra 274 73
No Yes Danio rerio 76_9 Zebrafish 514 124
No Yes Oikopleura dioica   95 41
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 702 114
No Yes Ciona intestinalis 76 Vase tunicate 377 94
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 760 248
No Yes Adineta vaga   31 10
No Yes Octopus bimaculoides 280   214 50
No Yes Crassostrea gigas 22 Pacific oyster 252 106
No Yes Lottia gigantea Owl limpet 351 126
No Yes Helobdella robusta   57 11
No Yes Capitella sp. I   352 80
No Yes Danaus plexippus OGS1.0 Monarch butterfly 39 12
No Yes Heliconius melpomene Postman butterfly 40 12
No Yes Bombyx mori Domestic silkworm 35 11
No Yes Nasonia vitripennis Jewel wasp 42 10
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 69 16
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 60 19
No Yes Linepithema humile v1.1 Argentine ant 60 15
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 51 14
No Yes Solenopsis invicta v.2.2.3 Red fire ant 37 12
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 54 13
No Yes Atta cephalotes v1.1   55 15
No Yes Camponotus floridanus v3.3 Florida carpenter ant 53 13
No Yes Lucilia cuprina Australian sheep blowfly 44 9
No Yes Drosophila grimshawi 1.3   55 14
No Yes Drosophila willistoni 1.3   49 12
No Yes Drosophila pseudoobscura 2.13   53 15
No Yes Drosophila persimilis 1.3   46 13
No Yes Drosophila suzukii   53 14
No Yes Drosophila yakuba 1.3   56 17
No Yes Drosophila simulans 1.3   45 15
No Yes Drosophila sechellia 1.3   51 16
No Yes Drosophila melanogaster 76_5 Fruit fly 185 41
No Yes Drosophila erecta 1.3   56 17
No Yes Drosophila ananassae 1.3   48 11
No Yes Drosophila virilis 1.2   50 11
No Yes Drosophila mojavensis 1.3   47 11
No Yes Megaselia scalaris 22   19 9
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 56 18
No Yes Culex pipiens quinquefasciatus Southern house mosquito 49 16
No Yes Anopheles darlingi 22 American malaria mosquito 28 5
No Yes Anopheles gambiae 49_3j African malaria mosquito 51 14
No Yes Tribolium castaneum 3.0 Red flour beetle 75 17
No Yes Pediculus humanus corporis (Early assembly) Human body louse 54 11
No Yes Acyrthosiphon pisum Pea aphid 45 10
No Yes Rhodnius prolixus 22   40 11
No Yes Daphnia pulex Common water flea 108 24
No Yes Strigamia maritima 22   123 38
No Yes Sarcoptes scabiei   48 13
No Yes Tetranychus urticae Two-spotted spider mite 87 25
No Yes Ixodes scapularis (Preliminary) Black-legged tick 90 40
No Yes Pristionchus pacificus   14 6
No Yes Meloidogyne incognita Southern root-knot nematode 73 27
No Yes Meloidogyne hapla   11 5
No Yes Onchocerca volvulus 22   50 14
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 42 18
No Yes Caenorhabditis japonica   45 13
No Yes Caenorhabditis brenneri   69 10
No Yes Caenorhabditis remanei   49 12
No Yes Caenorhabditis elegans 76_235 Roundworm 126 19
No Yes Caenorhabditis briggsae 2   45 8
No Yes Trichinella spiralis 22   28 10
No Yes Hymenolepis microstoma   11 5
No Yes Echinococcus multilocularis   8 2
No Yes Echinococcus granulosus   9 2
No Yes Taenia solium Pork tapeworm 9 3
No Yes Schistosoma mansoni   6 3
No Yes Mnemiopsis leidyi Sea walnut 262 110
No Yes Acropora digitifera v1.0   343 78
No Yes Nematostella vectensis 1.0 Starlet sea anemone 120 33
No Yes Hydra vulgaris   48 17
No Yes Amphimedon queenslandica   273 48
No Yes Trichoplax adhaerens   7 2
No Yes Proterospongia sp. ATCC 50818   102 32
No Yes Monosiga brevicollis   30 12
No Yes Sphaeroforma arctica JP610   1 1
No Yes Capsaspora owczarzaki ATCC 30864   128 20
No Yes Micromonas pusilla CCMP1545 v3.0   1 1
No Yes Thecamonas trahens ATCC 50062   227 38
No Yes Pythium iwayamai DAOM BR242034 22   1 1
No Yes Pythium arrhenomanes ATCC 12531 22   1 1
No Yes Pythium ultimum v1.7-2   1 1
No Yes Pythium aphanidermatum DAOM BR444 22   1 1
No Yes Pythium irregulare DAOM BR486 22   1 1
No Yes Pythium vexans DAOM BR484 22   1 1
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 1 1
No Yes Phytophthora infestans T30-4   1 1
No Yes Perkinsus marinus ATCC 50983   2 1
No Yes Cryptosporidium hominis   2 2
No Yes Cryptosporidium muris   2 2
No Yes Cryptosporidium parvum Iowa II   2 2
No Yes Neospora caninum   2 2
No Yes Toxoplasma gondii VEG   1 1
No Yes Toxoplasma gondii ME49   2 2
No Yes Plasmodium falciparum 3D7   1 1
No Yes Plasmodium vivax SaI-1 7.0   1 1
No Yes Plasmodium knowlesi strain H   1 1
No Yes Plasmodium yoelii ssp. yoelii 1   2 2
No Yes Plasmodium chabaudi   1 1
No Yes Plasmodium berghei ANKA   1 1
No Yes Symbiodinium minutum clade B1 v1.2   29 17
No Yes Guillardia theta CCMP2712 v1.0   32 13
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 359 80
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 155 34
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 60 15
No Yes Ascaris suum Victoria/Ghent Pig roundworm 43 11
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 53 14
No Yes Neospora caninum Nc-Liverpool 6.2   2 2
No Yes Plasmodium falciparum HB3   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 1543 346
No Yes Homo sapiens (NCBI version) Human 592 109
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 294 55
No Yes Heliconius numata (Incomplete)   2 2
No Yes Loa loa v3.3 (Request) Eye worm 46 12
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 38 17
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 31 11
No Yes Homo sapiens 69_37 Human 414 76
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 322 54
No Yes Gorilla gorilla 69_3.1 Western gorilla 314 51
No Yes Pongo abelii 69_2 Sumatran orangutan 311 54
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 265 46
No Yes Macaca mulatta 69_1 Rhesus monkey 285 54
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 307 53
No Yes Otolemur garnettii 69_3 Small-eared galago 275 47
No Yes Microcebus murinus 69_1 Gray mouse lemur 206 43
No Yes Rattus norvegicus 69_3.4 Norway rat 299 55
No Yes Mus musculus 69_38 House mouse 291 58
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 212 40
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 236 47
No Yes Cavia porcellus 69_3 Domestic guinea pig 260 47
No Yes Oryctolagus cuniculus 69_2 Rabbit 290 51
No Yes Ochotona princeps 69 American pika 235 42
No Yes Tupaia belangeri 69 Northern tree shrew 223 41
No Yes Sus scrofa 69_10.2 Pig 266 54
No Yes Bos taurus 69_3.1 Cattle 301 54
No Yes Vicugna pacos 69_1 Alpaca 237 37
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 248 48
No Yes Mustela putorius furo 69_1.0 Domestic ferret 311 58
No Yes Ailuropoda melanoleuca 69_1 Giant panda 286 57
No Yes Canis familiaris 69_3.1 Dog 292 48
No Yes Felis catus 69 Domestic cat 175 42
No Yes Equus caballus 69_2 Horse 323 55
No Yes Myotis lucifugus 69_2.0 Little brown bat 396 71
No Yes Pteropus vampyrus 69_1 Large flying fox 266 48
No Yes Sorex araneus 69_1 European shrew 180 32
No Yes Erinaceus europaeus 69 Western European hedgehog 185 40
No Yes Procavia capensis 69_1 Cape rock hyrax 200 44
No Yes Loxodonta africana 69_3 African savanna elephant 293 55
No Yes Echinops telfairi 69 Small Madagascar hedgehog 224 40
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 204 43
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 188 30
No Yes Macropus eugenii 69_1.0 Tammar wallaby 189 42
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 212 45
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 279 52
No Yes Ornithorhynchus anatinus 69_5 Platypus 277 64
No Yes Petromyzon marinus 69_7.0 Sea lamprey 113 21
No Yes Meleagris gallopavo 69_2 Turkey 205 43
No Yes Gallus gallus 69_2 Chicken 252 42
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 250 47
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 269 48
No Yes Anolis carolinensis 69_2.0 Green anole 258 43
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 243 49
No Yes Latimeria chalumnae 69_1 Coelacanth 174 47
No Yes Gadus morhua 69_1 Atlantic cod 193 47
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 248 53
No Yes Takifugu rubripes 69_4 Torafugu 249 49
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 270 53
No Yes Oryzias latipes 69_1 Japanese medaka 257 51
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 267 52
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 312 58
No Yes Danio rerio 69_9 Zebrafish 338 71
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 360 70
No Yes Ciona intestinalis 69 Vase tunicate 368 92
No Yes Drosophila melanogaster 69_5 Fruit fly 55 15
No Yes Caenorhabditis elegans 69_215 Roundworm 49 10
No Yes Endophytic microbiome from Rice (meta-genome)   1 1
No Yes NCBI 2017_08 genome   135945 27302
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   2 1
No Yes Protozoadb 2010_08 (Protozoadb)   24 24
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   10951 2334
No Yes Termite Protist Endosymbiont Community (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   84109 19171
No Yes Global Ocean Sampling Expedition (GOS)   50 31
No Yes NCBI viral sequences (Viral)   117 36
No Yes PDB chains (SCOP 1.75) (PDB)   82 40
No Yes Protein Data Bank (all PDB sequenc)   684 262
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   1247 1247
No Yes TargetDB (Targets)   314 85
No Yes UniProt viral sequences (Viral)   446 138

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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