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  Home > Genomes > Cavia porcellus 69_3 > LDL receptor-like module domains


LDL receptor-like module superfamily domain assignments
in
Cavia porcellus 69_3

Assignment details

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Cavia porcellus 69_3 has 199 significant domains in 49 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSCPOP00000001400   0.00000000000851   2719-2761   LDL receptor-like module  
  0.0000000000406   1249-1291   LDL receptor-like module  
  0.0000000000484   10-47   LDL receptor-like module  
  0.0000000000681   3613-3652   LDL receptor-like module  
  0.000000000105   2971-3013   LDL receptor-like module  
  0.000000000223   1090-1128   LDL receptor-like module  
  0.000000000223   1132-1169   LDL receptor-like module  
  0.000000000236   46-86   LDL receptor-like module  
  0.000000000353   3739-3779   LDL receptor-like module  
  0.000000000537   3496-3531   LDL receptor-like module  
  0.000000000654   3056-3095   LDL receptor-like module  
  0.00000000072   2887-2925   LDL receptor-like module  
  0.000000000838   3704-3741   LDL receptor-like module  
  0.000000000838   3783-3820   LDL receptor-like module  
  0.00000000089   1050-1087   LDL receptor-like module  
  0.000000000916   2684-2721   LDL receptor-like module  
  0.0000000017   1006-1044   LDL receptor-like module  
  0.00000000223   3571-3615   LDL receptor-like module  
  0.00000000236   85-125   LDL receptor-like module  
  0.00000000236   3013-3055   LDL receptor-like module  
  0.00000000367   206-242   LDL receptor-like module  
  0.00000000445   2842-2883   LDL receptor-like module  
  0.00000000497   1170-1208   LDL receptor-like module  
  0.00000000524   3912-3948   LDL receptor-like module  
  0.00000000654   167-202   LDL receptor-like module  
  0.00000000864   1214-1249   LDL receptor-like module  
  0.0000000089   3532-3574   LDL receptor-like module  
  0.0000000106   3826-3862   LDL receptor-like module  
  0.0000000236   2798-2844   LDL receptor-like module  
  0.0000000432   2929-2972   LDL receptor-like module  
  0.000000118   3868-3906   LDL receptor-like module  
  0.000000223   1295-1331   LDL receptor-like module  
  0.000000445   2765-2803   LDL receptor-like module  
  0.000000615   255-285   LDL receptor-like module  
  0.000000995   132-165   LDL receptor-like module  
  0.0000017   3667-3700   LDL receptor-like module  
ENSCPOP00000002377   0.00000000072   175-218   LDL receptor-like module  
  0.00000000746   222-260   LDL receptor-like module  
  0.0000262   264-301   LDL receptor-like module  
ENSCPOP00000002456   0.00000000000563   25-67   LDL receptor-like module  
ENSCPOP00000003102   0.00000000000746   467-505   LDL receptor-like module  
  0.00000772   544-583   LDL receptor-like module  
  0.000733   519-539   LDL receptor-like module  
ENSCPOP00000003461   0.0000000000209   53-90   LDL receptor-like module  
  0.000000000524   132-168   LDL receptor-like module  
ENSCPOP00000003800   0.00000000223   260-295   LDL receptor-like module  
  0.000000196   225-257   LDL receptor-like module  
ENSCPOP00000004073   0.00000000772   240-276   LDL receptor-like module  
  0.0000157   399-432   LDL receptor-like module  
ENSCPOP00000004089   0.000000262   528-567   LDL receptor-like module  
  0.00000117   492-523   LDL receptor-like module  
  0.0000249   457-490   LDL receptor-like module  
ENSCPOP00000004885   0.0000000000196   465-502   LDL receptor-like module  
  0.000000102   5-44   LDL receptor-like module  
ENSCPOP00000004934   0.00000072   89-122   LDL receptor-like module  
  0.0000681   172-213   LDL receptor-like module  
  0.000144   136-165   LDL receptor-like module  
ENSCPOP00000005288   0.000000707   170-207   LDL receptor-like module  
ENSCPOP00000005321   0.000000038   63-101   LDL receptor-like module  
ENSCPOP00000005868   0.0000000000128   30-66   LDL receptor-like module  
  0.000000000367   111-148   LDL receptor-like module  
  0.000000000458   71-108   LDL receptor-like module  
ENSCPOP00000006144   0.0000000000034   86-126   LDL receptor-like module  
  0.0000000000236   129-167   LDL receptor-like module  
  0.0000000000668   8-46   LDL receptor-like module  
  0.000000000327   179-216   LDL receptor-like module  
  0.00000000236   49-87   LDL receptor-like module  
  0.00000000314   218-256   LDL receptor-like module  
  0.0000000236   258-295   LDL receptor-like module  
ENSCPOP00000006276   0.000000000563   519-563   LDL receptor-like module  
  0.00000000209   132-169   LDL receptor-like module  
  0.0000000114   208-243   LDL receptor-like module  
  0.000000012   169-205   LDL receptor-like module  
  0.0000000144   445-482   LDL receptor-like module  
  0.0000000406   242-278   LDL receptor-like module  
  0.000000445   485-517   LDL receptor-like module  
ENSCPOP00000006362   0.0000000628   106-145   LDL receptor-like module  
ENSCPOP00000006380   0.0000000000314   254-294   LDL receptor-like module  
  0.00000000013   218-256   LDL receptor-like module  
  0.00000000017   299-335   LDL receptor-like module  
  0.000000000445   56-95   LDL receptor-like module  
  0.000000000458   133-173   LDL receptor-like module  
  0.00000000537   98-132   LDL receptor-like module  
  0.00000000641   177-215   LDL receptor-like module  
  0.00000249   16-58   LDL receptor-like module  
ENSCPOP00000006925   0.00000000000223   4-41   LDL receptor-like module  
  0.00000000000393   207-246   LDL receptor-like module  
  0.000000000038   122-161   LDL receptor-like module  
  0.0000000000484   245-285   LDL receptor-like module  
  0.000000000419   43-81   LDL receptor-like module  
  0.000000000524   160-198   LDL receptor-like module  
  0.00000000563   80-122   LDL receptor-like module  
  0.0000000406   291-328   LDL receptor-like module  
ENSCPOP00000007301   0.000000000681   1329-1365   LDL receptor-like module  
  0.00000000236   1291-1327   LDL receptor-like module  
  0.00000000537   1250-1290   LDL receptor-like module  
ENSCPOP00000007403   0.0000286   12-44   LDL receptor-like module  
ENSCPOP00000007789   0.00000183   76-108   LDL receptor-like module  
ENSCPOP00000008221   0.00000000157   24-64   LDL receptor-like module  
ENSCPOP00000008390   0.00000000288   217-253   LDL receptor-like module  
ENSCPOP00000008545   0.0000000183   146-182   LDL receptor-like module  
ENSCPOP00000009791   0.000000101   70-102   LDL receptor-like module  
ENSCPOP00000010355   0.000000000249   136-173   LDL receptor-like module  
  0.000000000288   45-81   LDL receptor-like module  
  0.000000000654   172-212   LDL receptor-like module  
  0.00000000615   85-121   LDL receptor-like module  
  0.0000000275   5-44   LDL receptor-like module  
  0.000000249   216-253   LDL receptor-like module  
ENSCPOP00000010364   0.000000000196   463-500   LDL receptor-like module  
  0.000000000419   498-536   LDL receptor-like module  
  0.00000000126   428-463   LDL receptor-like module  
  0.0000000421   538-579   LDL receptor-like module  
ENSCPOP00000010626   0.000000012   288-324   LDL receptor-like module  
ENSCPOP00000010846   0.00000000484   87-125   LDL receptor-like module  
ENSCPOP00000010985   0.0000000589   119-152   LDL receptor-like module  
ENSCPOP00000011935   0.000000000668   1325-1363   LDL receptor-like module  
  0.0000000013   1246-1286   LDL receptor-like module  
  0.0000000038   1287-1323   LDL receptor-like module  
ENSCPOP00000012349   0.0000000000471   454-491   LDL receptor-like module  
  0.000000000126   164-201   LDL receptor-like module  
  0.00000000131   210-249   LDL receptor-like module  
  0.00000236   415-452   LDL receptor-like module  
  0.00236   366-413   LDL receptor-like module  
ENSCPOP00000012718   0.00000000471   297-336   LDL receptor-like module  
ENSCPOP00000012721   0.000000000157   539-584   LDL receptor-like module  
  0.000000000157   583-622   LDL receptor-like module  
  0.000000000301   503-542   LDL receptor-like module  
  0.000000000301   2552-2593   LDL receptor-like module  
  0.000000000406   3425-3464   LDL receptor-like module  
  0.000000000419   627-665   LDL receptor-like module  
  0.000000000511   3337-3381   LDL receptor-like module  
  0.000000000524   3216-3251   LDL receptor-like module  
  0.000000000537   2421-2457   LDL receptor-like module  
  0.000000000602   3016-3056   LDL receptor-like module  
  0.000000000668   3295-3331   LDL receptor-like module  
  0.000000000785   2207-2248   LDL receptor-like module  
  0.000000000785   3256-3293   LDL receptor-like module  
  0.000000000838   3139-3175   LDL receptor-like module  
  0.000000000903   666-702   LDL receptor-like module  
  0.000000000969   2464-2499   LDL receptor-like module  
  0.00000000275   2341-2378   LDL receptor-like module  
  0.00000000327   714-750   LDL receptor-like module  
  0.00000000484   2979-3014   LDL receptor-like module  
  0.00000000707   3099-3135   LDL receptor-like module  
  0.0000000102   3173-3213   LDL receptor-like module  
  0.0000000118   3058-3095   LDL receptor-like module  
  0.000000017   2251-2288   LDL receptor-like module  
  0.0000000183   2381-2418   LDL receptor-like module  
  0.0000000196   2500-2541   LDL receptor-like module  
  0.000000209   2172-2209   LDL receptor-like module  
  0.000000301   761-793   LDL receptor-like module  
  0.000000314   2302-2337   LDL receptor-like module  
  0.000000511   796-832   LDL receptor-like module  
  0.0000144   3383-3415   LDL receptor-like module  
ENSCPOP00000013061   0.0000000000209   140-178   LDL receptor-like module  
  0.0000000000288   399-436   LDL receptor-like module  
  0.00034   329-354   LDL receptor-like module  
  0.000838   357-398   LDL receptor-like module  
ENSCPOP00000013681   0.000000000458   1565-1602   LDL receptor-like module  
  0.000000000615   2465-2501   LDL receptor-like module  
  0.00000000877   1377-1414   LDL receptor-like module  
  0.0000000196   1418-1455   LDL receptor-like module  
  0.0000000367   1454-1490   LDL receptor-like module  
  0.0000000497   2237-2274   LDL receptor-like module  
  0.0000000877   2387-2425   LDL receptor-like module  
  0.000000144   1494-1532   LDL receptor-like module  
  0.00000916   1605-1639   LDL receptor-like module  
  0.000127   1659-1684   LDL receptor-like module  
ENSCPOP00000013835   0.00000000000458   1413-1451   LDL receptor-like module  
  0.0000000000484   1192-1230   LDL receptor-like module  
  0.0000000000654   1319-1356   LDL receptor-like module  
  0.000000000223   1149-1190   LDL receptor-like module  
  0.0000000017   1072-1110   LDL receptor-like module  
  0.00000000223   1235-1268   LDL receptor-like module  
  0.00000000262   1367-1400   LDL receptor-like module  
  0.00000000602   1467-1504   LDL receptor-like module  
  0.0000000563   1507-1546   LDL receptor-like module  
  0.000000117   1113-1152   LDL receptor-like module  
  0.00000236   1272-1307   LDL receptor-like module  
ENSCPOP00000013993   0.000000249   9-46   LDL receptor-like module  
ENSCPOP00000014133   0.0000255   79-119   LDL receptor-like module  
ENSCPOP00000014682   0.0000000000327   3-36   LDL receptor-like module  
ENSCPOP00000015568   0.0000314   69-108   LDL receptor-like module  
  0.000157   30-66   LDL receptor-like module  
ENSCPOP00000016764   0.000000589   6-38   LDL receptor-like module  
ENSCPOP00000017678   0.000000000196   119-155   LDL receptor-like module  
  0.000000000589   241-280   LDL receptor-like module  
  0.00000000327   205-242   LDL receptor-like module  
  0.00000000681   160-195   LDL receptor-like module  
  0.0000000314   39-77   LDL receptor-like module  
  0.0000000602   1-37   LDL receptor-like module  
  0.000000127   85-116   LDL receptor-like module  
ENSCPOP00000018261   0.00000000327   226-264   LDL receptor-like module  
  0.0000432   449-487   LDL receptor-like module  
ENSCPOP00000018325   0.00000000785   97-136   LDL receptor-like module  
ENSCPOP00000018566   0.000000000497   264-301   LDL receptor-like module  
  0.000000000654   349-393   LDL receptor-like module  
  0.000000000929   306-343   LDL receptor-like module  
  0.0000000406   175-215   LDL receptor-like module  
ENSCPOP00000018905   0.0000000000131   409-447   LDL receptor-like module  
  0.000000000183   123-159   LDL receptor-like module  
  0.000000103   370-408   LDL receptor-like module  
  0.000000131   171-213   LDL receptor-like module  
  0.000000589   333-370   LDL receptor-like module  
ENSCPOP00000020787   0.0000268   149-186   LDL receptor-like module  
ENSCPOP00000020940   0.000000034   151-185   LDL receptor-like module  
 
Weak hits:
ENSCPOP00000010740   0.000367   146-169   LDL receptor-like module  

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Select to display   Genome       Domains   Proteins
No Yes ALL   327216 327216
No Yes Homo sapiens 76_38 Human 548 151
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 216 47
No Yes Gorilla gorilla 76_3.1 Western gorilla 276 65
No Yes Pongo abelii 76_2 Sumatran orangutan 204 46
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 205 51
No Yes Papio anubis 76 Olive baboon 223 47
No Yes Macaca mulatta 76_1 Rhesus monkey 283 70
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 461 115
No Yes Otolemur garnettii 76_3 Small-eared galago 203 44
No Yes Microcebus murinus 76_1 Gray mouse lemur 178 42
No Yes Rattus norvegicus 76_5.0 Norway rat 208 49
No Yes Mus musculus 76_38 House mouse 402 97
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 182 41
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 224 46
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 238 49
No Yes Cavia porcellus 76_3 Domestic guinea pig 223 51
No Yes Oryctolagus cuniculus 76_2 Rabbit 225 50
No Yes Ochotona princeps 76 American pika 188 39
No Yes Tupaia belangeri 76 Northern tree shrew 156 37
No Yes Sus scrofa 76_10.2 Pig 167 58
No Yes Bos taurus 76_3.1 Cattle 211 52
No Yes Ovis aries 76_3.1 Sheep 271 58
No Yes Vicugna pacos 76_1 Alpaca 117 23
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 196 45
No Yes Mustela putorius furo 76_1.0 Domestic ferret 233 47
No Yes Ailuropoda melanoleuca 76_1 Giant panda 261 52
No Yes Canis familiaris 76_3.1 Dog 374 66
No Yes Felis catus 76_6.2 Domestic cat 246 53
No Yes Equus caballus 76_2 Horse 321 60
No Yes Myotis lucifugus 76_2.0 Little brown bat 187 45
No Yes Pteropus vampyrus 76_1 Large flying fox 203 43
No Yes Sorex araneus 76_1 European shrew 106 25
No Yes Erinaceus europaeus 76 Western European hedgehog 139 33
No Yes Procavia capensis 76_1 Cape rock hyrax 174 36
No Yes Loxodonta africana 76_3 African savanna elephant 236 56
No Yes Echinops telfairi 76 Small Madagascar hedgehog 144 32
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 268 57
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 117 25
No Yes Macropus eugenii 76_1.0 Tammar wallaby 183 39
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 228 61
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 214 49
No Yes Ornithorhynchus anatinus 76_5 Platypus 206 53
No Yes Saccoglossus kowalevskii v3.0   1261 297
No Yes Petromyzon marinus 76_7.0 Sea lamprey 203 25
No Yes Meleagris gallopavo 76_2 Turkey 201 50
No Yes Gallus gallus 76_4 Chicken 222 45
No Yes Anas platyrhynchos 76_1.0 Mallard 185 45
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 193 44
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 218 43
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 212 59
No Yes Anolis carolinensis 76_2.0 Green anole 230 49
No Yes Xenopus laevis African clawed frog 176 45
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 231 62
No Yes Latimeria chalumnae 76_1 Coelacanth 249 52
No Yes Lepisosteus oculatus 76 Spotted gar 373 70
No Yes Gadus morhua 76_1 Atlantic cod 251 50
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 445 69
No Yes Takifugu rubripes 76_4 Torafugu 1153 201
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 365 68
No Yes Oryzias latipes 76_1 Japanese medaka 304 56
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 308 56
No Yes Poecilia formosa 76 Amazon molly 313 57
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 440 81
No Yes Astyanax mexicanus 76 Mexican tetra 293 73
No Yes Danio rerio 76_9 Zebrafish 537 103
No Yes Oikopleura dioica   54 30
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 454 80
No Yes Ciona intestinalis 76 Vase tunicate 156 67
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 601 193
No Yes Adineta vaga   274 125
No Yes Octopus bimaculoides 280   398 81
No Yes Crassostrea gigas 22 Pacific oyster 237 86
No Yes Lottia gigantea Owl limpet 212 60
No Yes Helobdella robusta   208 57
No Yes Capitella sp. I   359 115
No Yes Danaus plexippus OGS1.0 Monarch butterfly 163 38
No Yes Heliconius melpomene Postman butterfly 145 29
No Yes Bombyx mori Domestic silkworm 97 41
No Yes Nasonia vitripennis Jewel wasp 89 27
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 323 64
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 128 38
No Yes Linepithema humile v1.1 Argentine ant 122 43
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 116 43
No Yes Solenopsis invicta v.2.2.3 Red fire ant 98 38
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 126 36
No Yes Atta cephalotes v1.1   125 40
No Yes Camponotus floridanus v3.3 Florida carpenter ant 131 35
No Yes Lucilia cuprina Australian sheep blowfly 189 33
No Yes Drosophila grimshawi 1.3   174 37
No Yes Drosophila willistoni 1.3   172 39
No Yes Drosophila pseudoobscura 2.13   181 42
No Yes Drosophila persimilis 1.3   170 43
No Yes Drosophila suzukii   171 33
No Yes Drosophila yakuba 1.3   172 38
No Yes Drosophila simulans 1.3   99 33
No Yes Drosophila sechellia 1.3   155 40
No Yes Drosophila melanogaster 76_5 Fruit fly 643 97
No Yes Drosophila erecta 1.3   173 37
No Yes Drosophila ananassae 1.3   157 32
No Yes Drosophila virilis 1.2   158 36
No Yes Drosophila mojavensis 1.3   171 37
No Yes Megaselia scalaris 22   44 19
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 166 35
No Yes Culex pipiens quinquefasciatus Southern house mosquito 107 38
No Yes Anopheles darlingi 22 American malaria mosquito 118 28
No Yes Anopheles gambiae 49_3j African malaria mosquito 161 32
No Yes Tribolium castaneum 3.0 Red flour beetle 179 43
No Yes Pediculus humanus corporis (Early assembly) Human body louse 171 34
No Yes Acyrthosiphon pisum Pea aphid 150 36
No Yes Rhodnius prolixus 22   125 30
No Yes Daphnia pulex Common water flea 221 61
No Yes Strigamia maritima 22   202 47
No Yes Sarcoptes scabiei   128 42
No Yes Tetranychus urticae Two-spotted spider mite 193 71
No Yes Ixodes scapularis (Preliminary) Black-legged tick 139 44
No Yes Pristionchus pacificus   91 28
No Yes Meloidogyne incognita Southern root-knot nematode 95 18
No Yes Meloidogyne hapla   27 13
No Yes Onchocerca volvulus 22   73 17
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 129 27
No Yes Caenorhabditis japonica   103 24
No Yes Caenorhabditis brenneri   168 39
No Yes Caenorhabditis remanei   123 29
No Yes Caenorhabditis elegans 76_235 Roundworm 177 44
No Yes Caenorhabditis briggsae 2   118 26
No Yes Trichinella spiralis 22   119 32
No Yes Hymenolepis microstoma   45 11
No Yes Echinococcus multilocularis   39 13
No Yes Echinococcus granulosus   38 12
No Yes Taenia solium Pork tapeworm 35 17
No Yes Schistosoma mansoni   18 9
No Yes Mnemiopsis leidyi Sea walnut 413 204
No Yes Thelohanellus kitauei   270 126
No Yes Acropora digitifera v1.0   105 35
No Yes Nematostella vectensis 1.0 Starlet sea anemone 144 35
No Yes Hydra vulgaris   77 17
No Yes Amphimedon queenslandica   13 3
No Yes Trichoplax adhaerens   103 18
No Yes Proterospongia sp. ATCC 50818   2 2
No Yes Monosiga brevicollis   17 17
No Yes Sphaeroforma arctica JP610   1 1
No Yes Capsaspora owczarzaki ATCC 30864   2 2
No Yes Rhizopus oryzae RA 99-880   1 1
No Yes Rhizomucor miehei CAU432   1 1
No Yes Sphaerobolus stellatus v1.0   1 1
No Yes Tulasnella calospora AL13/4D v1.0   1 1
No Yes Botrytis cinerea B05.10   1 1
No Yes Sclerotinia sclerotiorum   1 1
No Yes Zasmidium cellare ATCC 36951 v1.0   1 1
No Yes Paracoccidioides brasiliensis Pb18   1 1
No Yes Histoplasma capsulatum class NAmI strain WU24   1 1
No Yes Penicillium chrysogenum Wisconsin 54-1255   1 1
No Yes Penicillium chrysogenum v1.0   1 1
No Yes Aspergillus acidus v1.0   1 1
No Yes Aspergillus brasiliensis v1.0   1 1
No Yes Aspergillus terreus NIH2624   1 1
No Yes Aspergillus tubingensis v1.0   1 1
No Yes Aspergillus niger 22   1 1
No Yes Aspergillus niger ATCC 1015   1 1
No Yes Tuber melanosporum Mel28 22   1 1
No Yes Tuber melanosporum Vittad Perigord truffle 1 1
No Yes Saccharomyces paradoxus MIT   1 1
No Yes Schizosaccharomyces japonicus yFS275   1 1
No Yes Catenaria anguillulae PL171 v1.0   1 1
No Yes Allomyces macrogynus ATCC 38327   1 1
No Yes Dictyostelium purpureum   1 1
No Yes Gossypium raimondii v221   2 2
No Yes Citrus clementina v165   2 2
No Yes Citrus sinensis v154 Sweet orange 2 2
No Yes Manihot esculenta v147 Cassava 1 1
No Yes Populus trichocarpa v156 Black cottonwood 1 1
No Yes Solanum lycopersicum v.2.3 Tomato 1 1
No Yes Solanum tuberosum Potato 3 3
No Yes Triticum aestivum 22 Bread wheat 5 5
No Yes Brachypodium distachyon Stiff brome 3 3
No Yes Panicum virgatum v202 Switchgrass 1 1
No Yes Musa balbisiana Balbis banana 1 1
No Yes Musa acuminata 22 Wild Malaysian banana 2 2
No Yes Coccomyxa subellipsoidea sp. C-169 v2   1 1
No Yes Volvox carteri f. nagariensis   1 1
No Yes Volvox carteri v199   1 1
No Yes Chlamydomonas reinhardtii 4.0   1 1
No Yes Thecamonas trahens ATCC 50062   1 1
No Yes Bigelowiella natans CCMP2755 22   2 2
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   1 1
No Yes Trypanosoma vivax   1 1
No Yes Trypanosoma congolense 2.4   1 1
No Yes Trypanosoma brucei gambiense v4.1   1 1
No Yes Trypanosoma brucei TREU927 v4.1   1 1
No Yes Pythium iwayamai DAOM BR242034 22   1 1
No Yes Pythium vexans DAOM BR484 22   1 1
No Yes Phytophthora sojae 1.1   1 1
No Yes Perkinsus marinus ATCC 50983   2 2
No Yes Naegleria gruberi   1 1
No Yes Trichomonas vaginalis   8 6
No Yes Emiliania huxleyi CCMP1516   1 1
No Yes Haliangium ochraceum DSM 14365   4 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 272 61
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 446 71
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 209 34
No Yes Ascaris suum Victoria/Ghent Pig roundworm 106 28
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 150 35
No Yes Cryptococcus neoformans var. grubii H99   1 1
No Yes Cryptococcus neoformans B-3501A   1 1
No Yes Cryptococcus neoformans JEC21   1 1
No Yes Paracoccidioides brasiliensis Pb03   1 1
No Yes Histoplasma capsulatum H88   1 1
No Yes Histoplasma capsulatum G186AR   1 1
No Yes Batrachochytrium dendrobatidis JAM81   1 1
No Yes Trypanosoma brucei Lister 427 v4.1   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 505 148
No Yes Homo sapiens (NCBI version) Human 303 75
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 220 45
No Yes Heliconius numata (Incomplete)   12 9
No Yes Loa loa v3.3 (Request) Eye worm 74 20
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 63 26
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 55 14
No Yes Moniliophthora perniciosa FA553 (Genome survey)   1 1
No Yes Picea sitchensis (Incomplete) Sitka spruce 1 1
No Yes Ricinus communis (Early assembly) Castor bean 1 1
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   3 3
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 1 1
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 1 1
No Yes Homo sapiens 69_37 Human 219 45
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 212 44
No Yes Gorilla gorilla 69_3.1 Western gorilla 191 46
No Yes Pongo abelii 69_2 Sumatran orangutan 201 44
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 188 47
No Yes Macaca mulatta 69_1 Rhesus monkey 192 45
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 216 49
No Yes Otolemur garnettii 69_3 Small-eared galago 202 43
No Yes Microcebus murinus 69_1 Gray mouse lemur 178 42
No Yes Rattus norvegicus 69_3.4 Norway rat 203 51
No Yes Mus musculus 69_38 House mouse 222 47
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 182 41
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 193 41
No Yes Cavia porcellus 69_3 Domestic guinea pig 199 49
No Yes Oryctolagus cuniculus 69_2 Rabbit 202 46
No Yes Ochotona princeps 69 American pika 188 39
No Yes Tupaia belangeri 69 Northern tree shrew 156 37
No Yes Sus scrofa 69_10.2 Pig 143 48
No Yes Bos taurus 69_3.1 Cattle 205 47
No Yes Vicugna pacos 69_1 Alpaca 117 23
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 196 45
No Yes Mustela putorius furo 69_1.0 Domestic ferret 230 46
No Yes Ailuropoda melanoleuca 69_1 Giant panda 224 48
No Yes Canis familiaris 69_3.1 Dog 243 49
No Yes Felis catus 69 Domestic cat 141 37
No Yes Equus caballus 69_2 Horse 223 52
No Yes Myotis lucifugus 69_2.0 Little brown bat 183 43
No Yes Pteropus vampyrus 69_1 Large flying fox 203 43
No Yes Sorex araneus 69_1 European shrew 106 25
No Yes Erinaceus europaeus 69 Western European hedgehog 139 33
No Yes Procavia capensis 69_1 Cape rock hyrax 174 36
No Yes Loxodonta africana 69_3 African savanna elephant 187 43
No Yes Echinops telfairi 69 Small Madagascar hedgehog 144 32
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 144 28
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 117 25
No Yes Macropus eugenii 69_1.0 Tammar wallaby 183 39
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 181 44
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 212 48
No Yes Ornithorhynchus anatinus 69_5 Platypus 175 47
No Yes Petromyzon marinus 69_7.0 Sea lamprey 168 21
No Yes Meleagris gallopavo 69_2 Turkey 169 44
No Yes Gallus gallus 69_2 Chicken 171 37
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 187 40
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 175 46
No Yes Anolis carolinensis 69_2.0 Green anole 223 47
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 220 53
No Yes Latimeria chalumnae 69_1 Coelacanth 192 43
No Yes Gadus morhua 69_1 Atlantic cod 237 47
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 307 53
No Yes Takifugu rubripes 69_4 Torafugu 272 48
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 314 55
No Yes Oryzias latipes 69_1 Japanese medaka 275 44
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 308 56
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 337 58
No Yes Danio rerio 69_9 Zebrafish 342 61
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 155 51
No Yes Ciona intestinalis 69 Vase tunicate 143 62
No Yes Drosophila melanogaster 69_5 Fruit fly 168 35
No Yes Caenorhabditis elegans 69_215 Roundworm 126 26
No Yes 1_Upper_euphotic (meta-genome)   3 2
No Yes 3_Below_base_of_euphotic (meta-genome)   1 1
No Yes 5_Below_upper_mesopelagic (meta-genome)   1 1
No Yes 6_Upper_euphotic (meta-genome)   2 1
No Yes 7_Oxygen_minimum_layer (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   1 1
No Yes NCBI 2017_08 genome   143684 28917
No Yes Protozoadb 2010_08 (Protozoadb)   18 14
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   8 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   2 2
No Yes STRING v9.0.5 (STRING)   10524 2529
No Yes Uniprot 2018_03 genome   103788 23713
No Yes Global Ocean Sampling Expedition (GOS)   193 113
No Yes PDB chains (SCOP 1.75) (PDB)   26 18
No Yes Protein Data Bank (all PDB sequenc)   207 160
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   244 244
No Yes TargetDB (Targets)   96 34

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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