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LDL receptor-like module superfamily domain assignments
in
Lottia gigantea

Assignment details

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Lottia gigantea has 212 significant domains in 60 proteins.

     

Sequence ID   Evalue   Region   Family  
jgi|Lotgi1|104147|e_gw1.2.52.1   0.0000000114   20-56   LDL receptor-like module  
  0.0000000249   58-100   LDL receptor-like module  
jgi|Lotgi1|112161|e_gw1.15.90.1   0.00000000000681   165-207   LDL receptor-like module  
  0.000000000209   127-168   LDL receptor-like module  
  0.00000000118   47-85   LDL receptor-like module  
  0.00000000144   84-123   LDL receptor-like module  
  0.00000000419   215-253   LDL receptor-like module  
  0.00000000877   254-292   LDL receptor-like module  
  0.000000034   2-44   LDL receptor-like module  
  0.00000236   294-330   LDL receptor-like module  
jgi|Lotgi1|125556|e_gw1.50.180.1   0.00000000000589   1-37   LDL receptor-like module  
  0.0000000000209   74-109   LDL receptor-like module  
  0.0000000000746   37-72   LDL receptor-like module  
jgi|Lotgi1|126149|e_gw1.52.276.1   0.0000000000196   926-966   LDL receptor-like module  
  0.000000000144   889-928   LDL receptor-like module  
  0.00000000128   965-1005   LDL receptor-like module  
  0.00000000196   1014-1051   LDL receptor-like module  
  0.000000406   1055-1098   LDL receptor-like module  
  0.00000406   1104-1136   LDL receptor-like module  
  0.00445   1151-1178   LDL receptor-like module  
jgi|Lotgi1|132384|e_gw1.79.47.1   0.000000000458   87-127   LDL receptor-like module  
  0.000000000641   170-214   LDL receptor-like module  
  0.00000000262   53-89   LDL receptor-like module  
  0.00000000903   13-49   LDL receptor-like module  
  0.000000209   129-162   LDL receptor-like module  
  0.034   212-235   LDL receptor-like module  
jgi|Lotgi1|135005|e_gw1.94.5.1   0.000000707   235-272   LDL receptor-like module  
jgi|Lotgi1|138790|e_gw1.130.29.1   0.0000000000119   145-186   LDL receptor-like module  
  0.0000000000406   105-140   LDL receptor-like module  
  0.000000000157   1-48   LDL receptor-like module  
  0.000000314   39-71   LDL receptor-like module  
  0.000000406   74-105   LDL receptor-like module  
jgi|Lotgi1|142042|e_gw1.173.1.1   0.000000000576   130-170   LDL receptor-like module  
  0.00000000144   343-379   LDL receptor-like module  
  0.00000000301   383-418   LDL receptor-like module  
  0.0000000681   56-93   LDL receptor-like module  
  0.0000000733   95-132   LDL receptor-like module  
  0.000000942   307-338   LDL receptor-like module  
  0.00000262   202-245   LDL receptor-like module  
  0.000262   467-505   LDL receptor-like module  
  0.00183   256-285   LDL receptor-like module  
  0.00288   173-206   LDL receptor-like module  
  0.00353   18-52   LDL receptor-like module  
  0.0157   423-445   LDL receptor-like module  
jgi|Lotgi1|143631|e_gw1.211.35.1   0.00000000000576   48-90   LDL receptor-like module  
  0.0000000942   3-42   LDL receptor-like module  
jgi|Lotgi1|143634|e_gw1.211.1.1   0.0000000000353   1337-1378   LDL receptor-like module  
  0.000000000223   1255-1294   LDL receptor-like module  
  0.000000000733   498-534   LDL receptor-like module  
  0.000000000733   537-573   LDL receptor-like module  
  0.00000000144   619-657   LDL receptor-like module  
  0.00000000157   1461-1499   LDL receptor-like module  
  0.00000000223   365-409   LDL receptor-like module  
  0.00000000223   1134-1169   LDL receptor-like module  
  0.00000000432   658-696   LDL receptor-like module  
  0.00000000982   1420-1457   LDL receptor-like module  
  0.0000000196   576-612   LDL receptor-like module  
  0.000000038   407-444   LDL receptor-like module  
  0.0000000602   1501-1539   LDL receptor-like module  
  0.000000223   1381-1417   LDL receptor-like module  
  0.000000511   1547-1581   LDL receptor-like module  
  0.000000602   1218-1256   LDL receptor-like module  
  0.000000903   459-492   LDL receptor-like module  
  0.00000122   1175-1215   LDL receptor-like module  
  0.00000288   329-368   LDL receptor-like module  
  0.00000537   705-736   LDL receptor-like module  
  0.0000089   1298-1337   LDL receptor-like module  
jgi|Lotgi1|154253|fgenesh2_pg.C_sca_5000293   0.00000511   134-169   LDL receptor-like module  
jgi|Lotgi1|154876|fgenesh2_pg.C_sca_7000025   0.000000196   106-142   LDL receptor-like module  
jgi|Lotgi1|155178|fgenesh2_pg.C_sca_7000327   0.00000000393   73-108   LDL receptor-like module  
jgi|Lotgi1|155604|fgenesh2_pg.C_sca_8000392   0.00000000089   78-114   LDL receptor-like module  
jgi|Lotgi1|156525|fgenesh2_pg.C_sca_11000211   0.000000503   180-220   LDL receptor-like module  
jgi|Lotgi1|157000|fgenesh2_pg.C_sca_12000311   0.000000000275   115-150   LDL receptor-like module  
  0.000000089   79-115   LDL receptor-like module  
  0.00000785   42-80   LDL receptor-like module  
jgi|Lotgi1|159051|fgenesh2_pg.C_sca_19000088   0.00000367   117-156   LDL receptor-like module  
jgi|Lotgi1|159188|fgenesh2_pg.C_sca_19000225   0.000000301   22-60   LDL receptor-like module  
  0.000000772   467-501   LDL receptor-like module  
jgi|Lotgi1|162203|fgenesh2_pg.C_sca_33000015   0.0000000353   139-178   LDL receptor-like module  
jgi|Lotgi1|164173|fgenesh2_pg.C_sca_44000015   0.0000000668   156-190   LDL receptor-like module  
jgi|Lotgi1|164175|fgenesh2_pg.C_sca_44000017   0.000000236   120-154   LDL receptor-like module  
jgi|Lotgi1|166161|fgenesh2_pg.C_sca_56000074   0.0000000497   28-66   LDL receptor-like module  
jgi|Lotgi1|167107|fgenesh2_pg.C_sca_63000111   0.0000000209   416-454   LDL receptor-like module  
jgi|Lotgi1|168371|fgenesh2_pg.C_sca_74000081   0.00000327   163-198   LDL receptor-like module  
jgi|Lotgi1|169836|fgenesh2_pg.C_sca_89000083   0.000000314   42-84   LDL receptor-like module  
jgi|Lotgi1|170220|fgenesh2_pg.C_sca_95000016   0.0000000196   24-60   LDL receptor-like module  
  0.000000746   64-99   LDL receptor-like module  
jgi|Lotgi1|170221|fgenesh2_pg.C_sca_95000017   0.000000000367   180-218   LDL receptor-like module  
jgi|Lotgi1|170222|fgenesh2_pg.C_sca_95000018   0.0000000000668   198-237   LDL receptor-like module  
  0.0000000000668   1601-1642   LDL receptor-like module  
  0.000000000111   1767-1806   LDL receptor-like module  
  0.000000000236   1852-1893   LDL receptor-like module  
  0.000000000249   2-37   LDL receptor-like module  
  0.000000000262   2628-2666   LDL receptor-like module  
  0.000000000432   76-117   LDL receptor-like module  
  0.000000000524   2800-2838   LDL receptor-like module  
  0.000000000681   2587-2627   LDL receptor-like module  
  0.00000000157   2548-2588   LDL receptor-like module  
  0.0000000034   2758-2797   LDL receptor-like module  
  0.0000000106   36-74   LDL receptor-like module  
  0.0000000131   2844-2881   LDL receptor-like module  
  0.0000000223   1564-1602   LDL receptor-like module  
  0.0000000406   1895-1937   LDL receptor-like module  
  0.0000000406   163-197   LDL receptor-like module  
  0.000000055   1678-1723   LDL receptor-like module  
  0.0000000733   2931-2967   LDL receptor-like module  
  0.000000262   2510-2546   LDL receptor-like module  
  0.000000275   2714-2753   LDL receptor-like module  
  0.000000288   1722-1764   LDL receptor-like module  
  0.000000406   2887-2921   LDL receptor-like module  
  0.000000654   2669-2711   LDL receptor-like module  
  0.000000851   246-282   LDL receptor-like module  
  0.0000013   1641-1683   LDL receptor-like module  
  0.00000183   120-156   LDL receptor-like module  
  0.0000038   1809-1853   LDL receptor-like module  
jgi|Lotgi1|171958|fgenesh2_pg.C_sca_123000026   0.0000000034   1259-1298   LDL receptor-like module  
  0.0000000183   1300-1335   LDL receptor-like module  
  0.0406   1335-1358   LDL receptor-like module  
jgi|Lotgi1|173011|fgenesh2_pg.C_sca_146000054   0.0000000000314   31-69   LDL receptor-like module  
  0.000000000105   1018-1055   LDL receptor-like module  
  0.00000000406   1097-1132   LDL receptor-like module  
  0.00000000641   67-107   LDL receptor-like module  
  0.0000000576   1053-1094   LDL receptor-like module  
  0.0000000628   135-171   LDL receptor-like module  
  0.0000000877   174-213   LDL receptor-like module  
  0.00000236   979-1015   LDL receptor-like module  
jgi|Lotgi1|175727|fgenesh2_pg.C_sca_361000001   0.00000000000903   641-678   LDL receptor-like module  
  0.00000000000969   199-240   LDL receptor-like module  
  0.0000000000183   403-448   LDL receptor-like module  
  0.0000000000367   367-404   LDL receptor-like module  
  0.0000000000772   677-720   LDL receptor-like module  
  0.000000000117   719-759   LDL receptor-like module  
  0.000000000157   760-799   LDL receptor-like module  
  0.00000000367   162-200   LDL receptor-like module  
  0.00000000929   276-321   LDL receptor-like module  
  0.00000000942   449-490   LDL receptor-like module  
  0.0000000445   320-362   LDL receptor-like module  
  0.000000288   241-281   LDL receptor-like module  
jgi|Lotgi1|175728|fgenesh2_pg.C_sca_361000002   0.0000000000537   663-699   LDL receptor-like module  
  0.00000000236   623-661   LDL receptor-like module  
  0.000000209   708-744   LDL receptor-like module  
jgi|Lotgi1|198809|estExt_Genewise1.C_sca_1080007   0.000000000367   67-106   LDL receptor-like module  
  0.00000000102   152-188   LDL receptor-like module  
  0.00000000115   192-227   LDL receptor-like module  
  0.0000000013   231-267   LDL receptor-like module  
  0.00000000733   28-66   LDL receptor-like module  
  0.0000000327   111-148   LDL receptor-like module  
  0.00000288   1-30   LDL receptor-like module  
jgi|Lotgi1|228404|estExt_fgenesh2_pg.C_sca_20388   0.000000000772   4422-4461   LDL receptor-like module  
  0.000000000785   2791-2828   LDL receptor-like module  
  0.00000000157   6498-6535   LDL receptor-like module  
  0.00000000432   7134-7173   LDL receptor-like module  
  0.00000000458   8214-8252   LDL receptor-like module  
  0.00000000628   6067-6105   LDL receptor-like module  
  0.00000000746   3015-3052   LDL receptor-like module  
  0.00000000956   7785-7820   LDL receptor-like module  
  0.0000000262   6288-6327   LDL receptor-like module  
  0.0000000393   4647-4685   LDL receptor-like module  
  0.0000000694   8490-8528   LDL receptor-like module  
  0.000000209   8429-8465   LDL receptor-like module  
  0.000000458   6714-6753   LDL receptor-like module  
  0.000000654   6914-6952   LDL receptor-like module  
  0.000000864   7340-7377   LDL receptor-like module  
  0.00000209   8011-8049   LDL receptor-like module  
  0.00000903   7578-7612   LDL receptor-like module  
  0.0000707   2594-2627   LDL receptor-like module  
  0.000275   4225-4265   LDL receptor-like module  
  0.00034   5874-5904   LDL receptor-like module  
  0.00615   8531-8561   LDL receptor-like module  
jgi|Lotgi1|230036|estExt_fgenesh2_pg.C_sca_100261   0.00000000825   418-454   LDL receptor-like module  
jgi|Lotgi1|230169|estExt_fgenesh2_pg.C_sca_110104   0.0000000000942   164-205   LDL receptor-like module  
jgi|Lotgi1|230171|estExt_fgenesh2_pg.C_sca_110109   0.00000000118   45-86   LDL receptor-like module  
jgi|Lotgi1|231429|estExt_fgenesh2_pg.C_sca_190212   0.0000196   697-730   LDL receptor-like module  
jgi|Lotgi1|232182|estExt_fgenesh2_pg.C_sca_260127   0.000000000772   145-184   LDL receptor-like module  
jgi|Lotgi1|233802|estExt_fgenesh2_pg.C_sca_440023   0.0000000327   148-182   LDL receptor-like module  
jgi|Lotgi1|233803|estExt_fgenesh2_pg.C_sca_440025   0.0000000628   704-738   LDL receptor-like module  
jgi|Lotgi1|233824|estExt_fgenesh2_pg.C_sca_440067   0.0000000236   455-488   LDL receptor-like module  
  0.0000000602   155-188   LDL receptor-like module  
  0.00000733   410-447   LDL receptor-like module  
  0.000144   206-249   LDL receptor-like module  
  0.00314   370-408   LDL receptor-like module  
jgi|Lotgi1|234340|estExt_fgenesh2_pg.C_sca_490132   0.0000000249   158-199   LDL receptor-like module  
jgi|Lotgi1|234614|estExt_fgenesh2_pg.C_sca_530062   0.0000144   39-75   LDL receptor-like module  
jgi|Lotgi1|235372|estExt_fgenesh2_pg.C_sca_630109   0.0000000103   354-389   LDL receptor-like module  
  0.0000000445   286-317   LDL receptor-like module  
jgi|Lotgi1|235814|estExt_fgenesh2_pg.C_sca_700058   0.0000000471   150-185   LDL receptor-like module  
jgi|Lotgi1|236088|estExt_fgenesh2_pg.C_sca_740077   0.0000000183   151-187   LDL receptor-like module  
jgi|Lotgi1|236519|estExt_fgenesh2_pg.C_sca_820106   0.000000196   165-205   LDL receptor-like module  
jgi|Lotgi1|237075|estExt_fgenesh2_pg.C_sca_940029   0.0000000772   130-161   LDL receptor-like module  
  0.0000707   225-263   LDL receptor-like module  
  0.0497   168-217   LDL receptor-like module  
jgi|Lotgi1|238307|estExt_fgenesh2_pg.C_sca_1400016   0.00000432   273-307   LDL receptor-like module  
  0.0511   227-261   LDL receptor-like module  
jgi|Lotgi1|51280|gw1.211.2.1   0.000000000183   627-669   LDL receptor-like module  
  0.00000000497   752-787   LDL receptor-like module  
  0.0000000196   510-544   LDL receptor-like module  
  0.0000000484   712-749   LDL receptor-like module  
  0.000000131   590-624   LDL receptor-like module  
  0.000000249   671-708   LDL receptor-like module  
  0.00288   548-584   LDL receptor-like module  
jgi|Lotgi1|57932|gw1.68.19.1   0.0000000000209   35-73   LDL receptor-like module  
  0.000000000157   75-111   LDL receptor-like module  
  0.0000000432   3-33   LDL receptor-like module  
  0.00157   112-134   LDL receptor-like module  
jgi|Lotgi1|59789|gw1.50.31.1   0.00000000000275   37-71   LDL receptor-like module  
  0.000000000864   1-33   LDL receptor-like module  
jgi|Lotgi1|60244|gw1.3.111.1   0.000000000746   2-47   LDL receptor-like module  
  0.00000209   43-75   LDL receptor-like module  
jgi|Lotgi1|60418|gw1.3872.1.1   0.000000000011   40-78   LDL receptor-like module  
  0.00000000012   3-36   LDL receptor-like module  
  0.00000000183   123-156   LDL receptor-like module  
  0.0000000275   81-117   LDL receptor-like module  
jgi|Lotgi1|62520|gw1.143.24.1   0.000000000602   74-111   LDL receptor-like module  
  0.000000000969   109-149   LDL receptor-like module  
  0.00000000131   30-66   LDL receptor-like module  
  0.000000301   160-189   LDL receptor-like module  
  0.00000038   2-28   LDL receptor-like module  
jgi|Lotgi1|68388|gw1.213.20.1   0.00000000000131   56-93   LDL receptor-like module  
  0.000000000223   17-53   LDL receptor-like module  
  0.000000012   95-132   LDL receptor-like module  
jgi|Lotgi1|75059|gw1.70.82.1   0.000000000419   107-142   LDL receptor-like module  
  0.0000000055   32-67   LDL receptor-like module  
  0.00000000851   69-105   LDL receptor-like module  
  0.000000929   2-32   LDL receptor-like module  
jgi|Lotgi1|75648|gw1.50.131.1   0.0000000000288   2-38   LDL receptor-like module  
  0.000000000262   83-118   LDL receptor-like module  
  0.000000000314   41-77   LDL receptor-like module  
jgi|Lotgi1|77449|gw1.50.155.1   0.00000000000772   1-35   LDL receptor-like module  
  0.0000000000262   34-71   LDL receptor-like module  
 
Weak hits:
jgi|Lotgi1|154773|fgenesh2_pg.C_sca_6000276   0.000483   292-326   LDL receptor-like module  
jgi|Lotgi1|226808|estExt_Genewise1Plus.C_sca_2050014   0.000157   42-73   LDL receptor-like module  
  0.00072   76-114   LDL receptor-like module  
jgi|Lotgi1|229373|estExt_fgenesh2_pg.C_sca_60270   0.00301   706-739   LDL receptor-like module  
jgi|Lotgi1|237195|estExt_fgenesh2_pg.C_sca_980026   0.000144   149-182   LDL receptor-like module  
jgi|Lotgi1|238820|estExt_fgenesh2_pg.C_sca_1730005   0.000275   171-213   LDL receptor-like module  
  0.00183   137-168   LDL receptor-like module  

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Select to display   Genome       Domains   Proteins
No Yes ALL   327216 327216
No Yes Homo sapiens 76_38 Human 548 151
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 216 47
No Yes Gorilla gorilla 76_3.1 Western gorilla 276 65
No Yes Pongo abelii 76_2 Sumatran orangutan 204 46
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 205 51
No Yes Papio anubis 76 Olive baboon 223 47
No Yes Macaca mulatta 76_1 Rhesus monkey 283 70
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 461 115
No Yes Otolemur garnettii 76_3 Small-eared galago 203 44
No Yes Microcebus murinus 76_1 Gray mouse lemur 178 42
No Yes Rattus norvegicus 76_5.0 Norway rat 208 49
No Yes Mus musculus 76_38 House mouse 402 97
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 182 41
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 224 46
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 238 49
No Yes Cavia porcellus 76_3 Domestic guinea pig 223 51
No Yes Oryctolagus cuniculus 76_2 Rabbit 225 50
No Yes Ochotona princeps 76 American pika 188 39
No Yes Tupaia belangeri 76 Northern tree shrew 156 37
No Yes Sus scrofa 76_10.2 Pig 167 58
No Yes Bos taurus 76_3.1 Cattle 211 52
No Yes Ovis aries 76_3.1 Sheep 271 58
No Yes Vicugna pacos 76_1 Alpaca 117 23
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 196 45
No Yes Mustela putorius furo 76_1.0 Domestic ferret 233 47
No Yes Ailuropoda melanoleuca 76_1 Giant panda 261 52
No Yes Canis familiaris 76_3.1 Dog 374 66
No Yes Felis catus 76_6.2 Domestic cat 246 53
No Yes Equus caballus 76_2 Horse 321 60
No Yes Myotis lucifugus 76_2.0 Little brown bat 187 45
No Yes Pteropus vampyrus 76_1 Large flying fox 203 43
No Yes Sorex araneus 76_1 European shrew 106 25
No Yes Erinaceus europaeus 76 Western European hedgehog 139 33
No Yes Procavia capensis 76_1 Cape rock hyrax 174 36
No Yes Loxodonta africana 76_3 African savanna elephant 236 56
No Yes Echinops telfairi 76 Small Madagascar hedgehog 144 32
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 268 57
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 117 25
No Yes Macropus eugenii 76_1.0 Tammar wallaby 183 39
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 228 61
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 214 49
No Yes Ornithorhynchus anatinus 76_5 Platypus 206 53
No Yes Saccoglossus kowalevskii v3.0   1261 297
No Yes Petromyzon marinus 76_7.0 Sea lamprey 203 25
No Yes Meleagris gallopavo 76_2 Turkey 201 50
No Yes Gallus gallus 76_4 Chicken 222 45
No Yes Anas platyrhynchos 76_1.0 Mallard 185 45
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 193 44
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 218 43
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 212 59
No Yes Anolis carolinensis 76_2.0 Green anole 230 49
No Yes Xenopus laevis African clawed frog 176 45
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 231 62
No Yes Latimeria chalumnae 76_1 Coelacanth 249 52
No Yes Lepisosteus oculatus 76 Spotted gar 373 70
No Yes Gadus morhua 76_1 Atlantic cod 251 50
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 445 69
No Yes Takifugu rubripes 76_4 Torafugu 1153 201
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 365 68
No Yes Oryzias latipes 76_1 Japanese medaka 304 56
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 308 56
No Yes Poecilia formosa 76 Amazon molly 313 57
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 440 81
No Yes Astyanax mexicanus 76 Mexican tetra 293 73
No Yes Danio rerio 76_9 Zebrafish 537 103
No Yes Oikopleura dioica   54 30
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 454 80
No Yes Ciona intestinalis 76 Vase tunicate 156 67
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 601 193
No Yes Adineta vaga   274 125
No Yes Octopus bimaculoides 280   398 81
No Yes Crassostrea gigas 22 Pacific oyster 237 86
No Yes Lottia gigantea Owl limpet 212 60
No Yes Helobdella robusta   208 57
No Yes Capitella sp. I   359 115
No Yes Danaus plexippus OGS1.0 Monarch butterfly 163 38
No Yes Heliconius melpomene Postman butterfly 145 29
No Yes Bombyx mori Domestic silkworm 97 41
No Yes Nasonia vitripennis Jewel wasp 89 27
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 323 64
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 128 38
No Yes Linepithema humile v1.1 Argentine ant 122 43
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 116 43
No Yes Solenopsis invicta v.2.2.3 Red fire ant 98 38
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 126 36
No Yes Atta cephalotes v1.1   125 40
No Yes Camponotus floridanus v3.3 Florida carpenter ant 131 35
No Yes Lucilia cuprina Australian sheep blowfly 189 33
No Yes Drosophila grimshawi 1.3   174 37
No Yes Drosophila willistoni 1.3   172 39
No Yes Drosophila pseudoobscura 2.13   181 42
No Yes Drosophila persimilis 1.3   170 43
No Yes Drosophila suzukii   171 33
No Yes Drosophila yakuba 1.3   172 38
No Yes Drosophila simulans 1.3   99 33
No Yes Drosophila sechellia 1.3   155 40
No Yes Drosophila melanogaster 76_5 Fruit fly 643 97
No Yes Drosophila erecta 1.3   173 37
No Yes Drosophila ananassae 1.3   157 32
No Yes Drosophila virilis 1.2   158 36
No Yes Drosophila mojavensis 1.3   171 37
No Yes Megaselia scalaris 22   44 19
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 166 35
No Yes Culex pipiens quinquefasciatus Southern house mosquito 107 38
No Yes Anopheles darlingi 22 American malaria mosquito 118 28
No Yes Anopheles gambiae 49_3j African malaria mosquito 161 32
No Yes Tribolium castaneum 3.0 Red flour beetle 179 43
No Yes Pediculus humanus corporis (Early assembly) Human body louse 171 34
No Yes Acyrthosiphon pisum Pea aphid 150 36
No Yes Rhodnius prolixus 22   125 30
No Yes Daphnia pulex Common water flea 221 61
No Yes Strigamia maritima 22   202 47
No Yes Sarcoptes scabiei   128 42
No Yes Tetranychus urticae Two-spotted spider mite 193 71
No Yes Ixodes scapularis (Preliminary) Black-legged tick 139 44
No Yes Pristionchus pacificus   91 28
No Yes Meloidogyne incognita Southern root-knot nematode 95 18
No Yes Meloidogyne hapla   27 13
No Yes Onchocerca volvulus 22   73 17
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 129 27
No Yes Caenorhabditis japonica   103 24
No Yes Caenorhabditis brenneri   168 39
No Yes Caenorhabditis remanei   123 29
No Yes Caenorhabditis elegans 76_235 Roundworm 177 44
No Yes Caenorhabditis briggsae 2   118 26
No Yes Trichinella spiralis 22   119 32
No Yes Hymenolepis microstoma   45 11
No Yes Echinococcus multilocularis   39 13
No Yes Echinococcus granulosus   38 12
No Yes Taenia solium Pork tapeworm 35 17
No Yes Schistosoma mansoni   18 9
No Yes Mnemiopsis leidyi Sea walnut 413 204
No Yes Thelohanellus kitauei   270 126
No Yes Acropora digitifera v1.0   105 35
No Yes Nematostella vectensis 1.0 Starlet sea anemone 144 35
No Yes Hydra vulgaris   77 17
No Yes Amphimedon queenslandica   13 3
No Yes Trichoplax adhaerens   103 18
No Yes Proterospongia sp. ATCC 50818   2 2
No Yes Monosiga brevicollis   17 17
No Yes Sphaeroforma arctica JP610   1 1
No Yes Capsaspora owczarzaki ATCC 30864   2 2
No Yes Rhizopus oryzae RA 99-880   1 1
No Yes Rhizomucor miehei CAU432   1 1
No Yes Sphaerobolus stellatus v1.0   1 1
No Yes Tulasnella calospora AL13/4D v1.0   1 1
No Yes Botrytis cinerea B05.10   1 1
No Yes Sclerotinia sclerotiorum   1 1
No Yes Zasmidium cellare ATCC 36951 v1.0   1 1
No Yes Paracoccidioides brasiliensis Pb18   1 1
No Yes Histoplasma capsulatum class NAmI strain WU24   1 1
No Yes Penicillium chrysogenum Wisconsin 54-1255   1 1
No Yes Penicillium chrysogenum v1.0   1 1
No Yes Aspergillus acidus v1.0   1 1
No Yes Aspergillus brasiliensis v1.0   1 1
No Yes Aspergillus terreus NIH2624   1 1
No Yes Aspergillus tubingensis v1.0   1 1
No Yes Aspergillus niger 22   1 1
No Yes Aspergillus niger ATCC 1015   1 1
No Yes Tuber melanosporum Mel28 22   1 1
No Yes Tuber melanosporum Vittad Perigord truffle 1 1
No Yes Saccharomyces paradoxus MIT   1 1
No Yes Schizosaccharomyces japonicus yFS275   1 1
No Yes Catenaria anguillulae PL171 v1.0   1 1
No Yes Allomyces macrogynus ATCC 38327   1 1
No Yes Dictyostelium purpureum   1 1
No Yes Gossypium raimondii v221   2 2
No Yes Citrus clementina v165   2 2
No Yes Citrus sinensis v154 Sweet orange 2 2
No Yes Manihot esculenta v147 Cassava 1 1
No Yes Populus trichocarpa v156 Black cottonwood 1 1
No Yes Solanum lycopersicum v.2.3 Tomato 1 1
No Yes Solanum tuberosum Potato 3 3
No Yes Triticum aestivum 22 Bread wheat 5 5
No Yes Brachypodium distachyon Stiff brome 3 3
No Yes Panicum virgatum v202 Switchgrass 1 1
No Yes Musa balbisiana Balbis banana 1 1
No Yes Musa acuminata 22 Wild Malaysian banana 2 2
No Yes Coccomyxa subellipsoidea sp. C-169 v2   1 1
No Yes Volvox carteri f. nagariensis   1 1
No Yes Volvox carteri v199   1 1
No Yes Chlamydomonas reinhardtii 4.0   1 1
No Yes Thecamonas trahens ATCC 50062   1 1
No Yes Bigelowiella natans CCMP2755 22   2 2
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   1 1
No Yes Trypanosoma vivax   1 1
No Yes Trypanosoma congolense 2.4   1 1
No Yes Trypanosoma brucei gambiense v4.1   1 1
No Yes Trypanosoma brucei TREU927 v4.1   1 1
No Yes Pythium iwayamai DAOM BR242034 22   1 1
No Yes Pythium vexans DAOM BR484 22   1 1
No Yes Phytophthora sojae 1.1   1 1
No Yes Perkinsus marinus ATCC 50983   2 2
No Yes Naegleria gruberi   1 1
No Yes Trichomonas vaginalis   8 6
No Yes Emiliania huxleyi CCMP1516   1 1
No Yes Haliangium ochraceum DSM 14365   4 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 272 61
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 446 71
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 209 34
No Yes Ascaris suum Victoria/Ghent Pig roundworm 106 28
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 150 35
No Yes Cryptococcus neoformans var. grubii H99   1 1
No Yes Cryptococcus neoformans B-3501A   1 1
No Yes Cryptococcus neoformans JEC21   1 1
No Yes Paracoccidioides brasiliensis Pb03   1 1
No Yes Histoplasma capsulatum H88   1 1
No Yes Histoplasma capsulatum G186AR   1 1
No Yes Batrachochytrium dendrobatidis JAM81   1 1
No Yes Trypanosoma brucei Lister 427 v4.1   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 505 148
No Yes Homo sapiens (NCBI version) Human 303 75
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 220 45
No Yes Heliconius numata (Incomplete)   12 9
No Yes Loa loa v3.3 (Request) Eye worm 74 20
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 63 26
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 55 14
No Yes Moniliophthora perniciosa FA553 (Genome survey)   1 1
No Yes Picea sitchensis (Incomplete) Sitka spruce 1 1
No Yes Ricinus communis (Early assembly) Castor bean 1 1
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   3 3
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 1 1
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 1 1
No Yes Homo sapiens 69_37 Human 219 45
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 212 44
No Yes Gorilla gorilla 69_3.1 Western gorilla 191 46
No Yes Pongo abelii 69_2 Sumatran orangutan 201 44
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 188 47
No Yes Macaca mulatta 69_1 Rhesus monkey 192 45
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 216 49
No Yes Otolemur garnettii 69_3 Small-eared galago 202 43
No Yes Microcebus murinus 69_1 Gray mouse lemur 178 42
No Yes Rattus norvegicus 69_3.4 Norway rat 203 51
No Yes Mus musculus 69_38 House mouse 222 47
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 182 41
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 193 41
No Yes Cavia porcellus 69_3 Domestic guinea pig 199 49
No Yes Oryctolagus cuniculus 69_2 Rabbit 202 46
No Yes Ochotona princeps 69 American pika 188 39
No Yes Tupaia belangeri 69 Northern tree shrew 156 37
No Yes Sus scrofa 69_10.2 Pig 143 48
No Yes Bos taurus 69_3.1 Cattle 205 47
No Yes Vicugna pacos 69_1 Alpaca 117 23
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 196 45
No Yes Mustela putorius furo 69_1.0 Domestic ferret 230 46
No Yes Ailuropoda melanoleuca 69_1 Giant panda 224 48
No Yes Canis familiaris 69_3.1 Dog 243 49
No Yes Felis catus 69 Domestic cat 141 37
No Yes Equus caballus 69_2 Horse 223 52
No Yes Myotis lucifugus 69_2.0 Little brown bat 183 43
No Yes Pteropus vampyrus 69_1 Large flying fox 203 43
No Yes Sorex araneus 69_1 European shrew 106 25
No Yes Erinaceus europaeus 69 Western European hedgehog 139 33
No Yes Procavia capensis 69_1 Cape rock hyrax 174 36
No Yes Loxodonta africana 69_3 African savanna elephant 187 43
No Yes Echinops telfairi 69 Small Madagascar hedgehog 144 32
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 144 28
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 117 25
No Yes Macropus eugenii 69_1.0 Tammar wallaby 183 39
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 181 44
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 212 48
No Yes Ornithorhynchus anatinus 69_5 Platypus 175 47
No Yes Petromyzon marinus 69_7.0 Sea lamprey 168 21
No Yes Meleagris gallopavo 69_2 Turkey 169 44
No Yes Gallus gallus 69_2 Chicken 171 37
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 187 40
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 175 46
No Yes Anolis carolinensis 69_2.0 Green anole 223 47
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 220 53
No Yes Latimeria chalumnae 69_1 Coelacanth 192 43
No Yes Gadus morhua 69_1 Atlantic cod 237 47
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 307 53
No Yes Takifugu rubripes 69_4 Torafugu 272 48
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 314 55
No Yes Oryzias latipes 69_1 Japanese medaka 275 44
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 308 56
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 337 58
No Yes Danio rerio 69_9 Zebrafish 342 61
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 155 51
No Yes Ciona intestinalis 69 Vase tunicate 143 62
No Yes Drosophila melanogaster 69_5 Fruit fly 168 35
No Yes Caenorhabditis elegans 69_215 Roundworm 126 26
No Yes 1_Upper_euphotic (meta-genome)   3 2
No Yes 3_Below_base_of_euphotic (meta-genome)   1 1
No Yes 5_Below_upper_mesopelagic (meta-genome)   1 1
No Yes 6_Upper_euphotic (meta-genome)   2 1
No Yes 7_Oxygen_minimum_layer (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   1 1
No Yes NCBI 2017_08 genome   143684 28917
No Yes Protozoadb 2010_08 (Protozoadb)   18 14
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   8 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   2 2
No Yes STRING v9.0.5 (STRING)   10524 2529
No Yes Uniprot 2018_03 genome   103788 23713
No Yes Global Ocean Sampling Expedition (GOS)   193 113
No Yes PDB chains (SCOP 1.75) (PDB)   26 18
No Yes Protein Data Bank (all PDB sequenc)   207 160
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   244 244
No Yes TargetDB (Targets)   96 34

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