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LDL receptor-like module superfamily domain assignments
in
Ciona intestinalis 76

Assignment details

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Ciona intestinalis 76 has 156 significant domains in 67 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSCINP00000000777   0.0000115   84-119   LDL receptor-like module  
  0.000929   121-155   LDL receptor-like module  
  0.0131   6-26   LDL receptor-like module  
ENSCINP00000001165   0.0000000144   174-215   LDL receptor-like module  
  0.0000000576   132-169   LDL receptor-like module  
  0.000000123   299-333   LDL receptor-like module  
ENSCINP00000005121   0.000000000327   1-37   LDL receptor-like module  
  0.00000000072   169-212   LDL receptor-like module  
  0.00000000131   125-160   LDL receptor-like module  
  0.00000000196   219-262   LDL receptor-like module  
  0.00000000589   78-118   LDL receptor-like module  
  0.00000000628   41-79   LDL receptor-like module  
  0.00497   280-299   LDL receptor-like module  
ENSCINP00000005347   0.0000000131   39-76   LDL receptor-like module  
  0.0000707   3-31   LDL receptor-like module  
  0.000114   82-118   LDL receptor-like module  
  0.00144   121-155   LDL receptor-like module  
ENSCINP00000006581   0.000000000982   131-171   LDL receptor-like module  
ENSCINP00000007450   0.00000144   12-55   LDL receptor-like module  
  0.00000196   58-90   LDL receptor-like module  
  0.00000576   187-227   LDL receptor-like module  
  0.000445   231-261   LDL receptor-like module  
  0.0771   150-189   LDL receptor-like module  
ENSCINP00000007747   0.00000000223   190-224   LDL receptor-like module  
  0.00249   4-28   LDL receptor-like module  
ENSCINP00000009351   0.0000995   113-145   LDL receptor-like module  
  0.000249   47-73   LDL receptor-like module  
  0.0157   77-110   LDL receptor-like module  
ENSCINP00000010557   0.0000000236   149-189   LDL receptor-like module  
ENSCINP00000011935   0.0000000144   114-155   LDL receptor-like module  
  0.00000654   48-77   LDL receptor-like module  
ENSCINP00000013742   0.0000000000537   1186-1224   LDL receptor-like module  
  0.000000000262   1022-1059   LDL receptor-like module  
  0.000000000288   937-980   LDL receptor-like module  
  0.000000000301   982-1019   LDL receptor-like module  
  0.000000000589   110-147   LDL receptor-like module  
  0.00000000124   1062-1102   LDL receptor-like module  
  0.00000000301   1145-1180   LDL receptor-like module  
  0.00000000314   151-187   LDL receptor-like module  
  0.00000000995   67-103   LDL receptor-like module  
  0.0000000119   22-62   LDL receptor-like module  
  0.0000000668   1101-1139   LDL receptor-like module  
  0.00000353   1228-1268   LDL receptor-like module  
ENSCINP00000014150   0.000000969   41-77   LDL receptor-like module  
  0.00000995   6-38   LDL receptor-like module  
ENSCINP00000015303   0.000000012   78-110   LDL receptor-like module  
  0.0000000903   115-152   LDL receptor-like module  
  0.000000144   1-32   LDL receptor-like module  
  0.000000759   32-74   LDL receptor-like module  
ENSCINP00000015946   0.0000238   62-100   LDL receptor-like module  
  0.00435   105-149   LDL receptor-like module  
ENSCINP00000017842   0.00000000393   57-99   LDL receptor-like module  
ENSCINP00000017843   0.0000011   17-49   LDL receptor-like module  
ENSCINP00000017845   0.00000000236   150-191   LDL receptor-like module  
ENSCINP00000018072   0.00000000995   252-291   LDL receptor-like module  
ENSCINP00000018337   0.0000000013   56-94   LDL receptor-like module  
ENSCINP00000020044   0.00000707   22-73   LDL receptor-like module  
ENSCINP00000021667   0.000000812   159-198   LDL receptor-like module  
  0.0000144   197-234   LDL receptor-like module  
  0.0000288   25-56   LDL receptor-like module  
  0.00106   1-17   LDL receptor-like module  
  0.00681   72-101   LDL receptor-like module  
ENSCINP00000023073   0.00000903   2-28   LDL receptor-like module  
  0.00000903   110-147   LDL receptor-like module  
  0.0000615   76-108   LDL receptor-like module  
ENSCINP00000023617   0.00000288   74-119   LDL receptor-like module  
  0.000017   109-143   LDL receptor-like module  
  0.0000406   37-73   LDL receptor-like module  
ENSCINP00000024022   0.00000000000249   24-62   LDL receptor-like module  
  0.00000000798   152-185   LDL receptor-like module  
  0.000524   109-138   LDL receptor-like module  
ENSCINP00000024362   0.00000000013   981-1019   LDL receptor-like module  
  0.000000000432   1147-1185   LDL receptor-like module  
  0.000000000654   1232-1272   LDL receptor-like module  
  0.00000000144   1383-1416   LDL receptor-like module  
  0.00000000576   1287-1322   LDL receptor-like module  
  0.0000000183   1063-1101   LDL receptor-like module  
  0.0000000249   1023-1062   LDL receptor-like module  
  0.0000000733   1421-1457   LDL receptor-like module  
  0.000000209   1110-1143   LDL receptor-like module  
  0.0000144   1340-1380   LDL receptor-like module  
ENSCINP00000024814   0.000000131   34-66   LDL receptor-like module  
  0.000785   88-114   LDL receptor-like module  
ENSCINP00000024995   0.0000000102   404-441   LDL receptor-like module  
  0.000000733   198-233   LDL receptor-like module  
  0.0072   3-25   LDL receptor-like module  
ENSCINP00000025352   0.0000484   76-106   LDL receptor-like module  
  0.000471   110-148   LDL receptor-like module  
  0.0038   6-26   LDL receptor-like module  
ENSCINP00000025767   0.00000628   150-185   LDL receptor-like module  
  0.000105   112-147   LDL receptor-like module  
ENSCINP00000026121   0.0000262   46-84   LDL receptor-like module  
  0.0183   4-24   LDL receptor-like module  
ENSCINP00000026562   0.00000000236   150-191   LDL receptor-like module  
ENSCINP00000027515   0.000000000223   362-407   LDL receptor-like module  
  0.0000458   433-458   LDL receptor-like module  
ENSCINP00000028557   0.00000126   168-206   LDL receptor-like module  
  0.0916   247-266   LDL receptor-like module  
ENSCINP00000029347   0.000000000628   123-160   LDL receptor-like module  
ENSCINP00000029716   0.00000000157   137-173   LDL receptor-like module  
  0.0000000055   104-134   LDL receptor-like module  
  0.00000000798   51-93   LDL receptor-like module  
  0.0000000157   9-48   LDL receptor-like module  
  0.0000484   184-215   LDL receptor-like module  
ENSCINP00000029745   0.0000000114   347-385   LDL receptor-like module  
ENSCINP00000030151   0.0000183   83-116   LDL receptor-like module  
  0.000144   117-150   LDL receptor-like module  
  0.00982   6-27   LDL receptor-like module  
ENSCINP00000030296   0.00000628   104-142   LDL receptor-like module  
  0.0000262   71-100   LDL receptor-like module  
  0.000288   3-25   LDL receptor-like module  
ENSCINP00000030621   0.0000000537   13-44   LDL receptor-like module  
  0.000223   189-224   LDL receptor-like module  
  0.000838   103-131   LDL receptor-like module  
  0.0114   77-100   LDL receptor-like module  
ENSCINP00000030627   0.000000000641   66-102   LDL receptor-like module  
ENSCINP00000031088   0.0000000209   143-185   LDL receptor-like module  
ENSCINP00000031163   0.0000785   45-77   LDL receptor-like module  
  0.000236   2-26   LDL receptor-like module  
  0.000497   118-151   LDL receptor-like module  
  0.00969   80-115   LDL receptor-like module  
ENSCINP00000031268   0.0000000000209   240-278   LDL receptor-like module  
  0.0000000000707   76-113   LDL receptor-like module  
  0.000000000101   38-74   LDL receptor-like module  
  0.000000000524   116-155   LDL receptor-like module  
  0.00000000114   199-234   LDL receptor-like module  
  0.0000000262   155-193   LDL receptor-like module  
  0.0000000903   1-33   LDL receptor-like module  
  0.00000144   285-322   LDL receptor-like module  
ENSCINP00000031411   0.000000628   10-50   LDL receptor-like module  
  0.000000654   53-88   LDL receptor-like module  
  0.000196   225-257   LDL receptor-like module  
  0.00127   162-181   LDL receptor-like module  
  0.0089   184-222   LDL receptor-like module  
ENSCINP00000031443   0.00000000289   100-145   LDL receptor-like module  
ENSCINP00000031774   0.0000000406   24-58   LDL receptor-like module  
ENSCINP00000031974   0.000000000209   164-202   LDL receptor-like module  
ENSCINP00000032418   0.000000000126   82-118   LDL receptor-like module  
  0.000000000183   163-201   LDL receptor-like module  
  0.000000000419   119-159   LDL receptor-like module  
  0.000118   198-222   LDL receptor-like module  
ENSCINP00000033206   0.00000000223   54-91   LDL receptor-like module  
ENSCINP00000033372   0.00000000000367   68-108   LDL receptor-like module  
  0.00000000183   111-148   LDL receptor-like module  
  0.00000000835   26-69   LDL receptor-like module  
  0.0000000314   150-184   LDL receptor-like module  
ENSCINP00000033374   0.000000000327   1259-1302   LDL receptor-like module  
  0.0000000017   1316-1354   LDL receptor-like module  
  0.00000000262   113-152   LDL receptor-like module  
  0.0000000196   1040-1077   LDL receptor-like module  
  0.0000000288   567-605   LDL receptor-like module  
  0.0000196   1355-1388   LDL receptor-like module  
  0.0000367   352-386   LDL receptor-like module  
  0.00131   798-829   LDL receptor-like module  
ENSCINP00000033690   0.0000406   135-165   LDL receptor-like module  
  0.000367   169-207   LDL receptor-like module  
  0.00038   8-39   LDL receptor-like module  
  0.0942   55-84   LDL receptor-like module  
ENSCINP00000033960   0.000000000367   66-98   LDL receptor-like module  
  0.000000055   29-66   LDL receptor-like module  
ENSCINP00000034109   0.0000000209   162-198   LDL receptor-like module  
  0.0000759   116-156   LDL receptor-like module  
  0.000589   94-113   LDL receptor-like module  
ENSCINP00000034332   0.0000157   217-254   LDL receptor-like module  
  0.0000196   40-73   LDL receptor-like module  
  0.000327   180-216   LDL receptor-like module  
  0.0144   89-121   LDL receptor-like module  
  0.0183   11-35   LDL receptor-like module  
ENSCINP00000034409   0.0000011   59-98   LDL receptor-like module  
ENSCINP00000034613   0.000000288   46-78   LDL receptor-like module  
  0.00000055   2-41   LDL receptor-like module  
  0.000144   78-110   LDL receptor-like module  
  0.000196   217-249   LDL receptor-like module  
  0.00838   150-173   LDL receptor-like module  
  0.0157   177-214   LDL receptor-like module  
ENSCINP00000034781   0.000000524   53-89   LDL receptor-like module  
  0.000000957   12-50   LDL receptor-like module  
  0.0000144   211-244   LDL receptor-like module  
  0.0000589   156-189   LDL receptor-like module  
  0.000353   236-269   LDL receptor-like module  
ENSCINP00000034791   0.00000000615   84-123   LDL receptor-like module  
  0.000017   121-152   LDL receptor-like module  
  0.0000681   23-58   LDL receptor-like module  
ENSCINP00000034879   0.00000000000458   36-77   LDL receptor-like module  
  0.00000000183   3-36   LDL receptor-like module  
  0.00000000903   80-118   LDL receptor-like module  
  0.00000209   119-147   LDL receptor-like module  
ENSCINP00000035033   0.0000000000183   166-206   LDL receptor-like module  
  0.000000000157   86-124   LDL receptor-like module  
  0.00000000055   210-247   LDL receptor-like module  
  0.000000000877   46-82   LDL receptor-like module  
  0.0000000157   134-166   LDL receptor-like module  
ENSCINP00000035045   0.0000000812   87-121   LDL receptor-like module  
  0.00000563   146-171   LDL receptor-like module  
ENSCINP00000035189   0.0000113   30-61   LDL receptor-like module  
  0.000017   201-238   LDL receptor-like module  
  0.00119   164-202   LDL receptor-like module  
  0.00249   2-23   LDL receptor-like module  
ENSCINP00000035479   0.0000196   106-143   LDL receptor-like module  
  0.00034   3-24   LDL receptor-like module  
  0.000733   70-104   LDL receptor-like module  
ENSCINP00000035992   0.00000367   110-149   LDL receptor-like module  
  0.00000942   76-107   LDL receptor-like module  
  0.000903   3-24   LDL receptor-like module  
ENSCINP00000036421   0.0000641   59-91   LDL receptor-like module  
  0.000127   227-262   LDL receptor-like module  
  0.000236   160-186   LDL receptor-like module  
  0.00576   15-54   LDL receptor-like module  
  0.0393   200-227   LDL receptor-like module  
ENSCINP00000036587   0.0000000131   129-171   LDL receptor-like module  
  0.00000123   176-207   LDL receptor-like module  
  0.00000694   83-120   LDL receptor-like module  
 
Weak hits:
ENSCINP00000000767   0.000471   97-121   LDL receptor-like module  
  0.00183   120-155   LDL receptor-like module  
  0.00668   3-27   LDL receptor-like module  
ENSCINP00000025004   0.000236   126-150   LDL receptor-like module  
  0.00825   70-93   LDL receptor-like module  
ENSCINP00000030906   0.00143   233-280   LDL receptor-like module  
ENSCINP00000032141   0.000327   127-161   LDL receptor-like module  
  0.00034   3-25   LDL receptor-like module  
  0.000432   47-77   LDL receptor-like module  
ENSCINP00000034511   0.000393   149-184   LDL receptor-like module  

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Select to display   Genome       Domains   Proteins
No Yes ALL   327216 327216
No Yes Homo sapiens 76_38 Human 548 151
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 216 47
No Yes Gorilla gorilla 76_3.1 Western gorilla 276 65
No Yes Pongo abelii 76_2 Sumatran orangutan 204 46
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 205 51
No Yes Papio anubis 76 Olive baboon 223 47
No Yes Macaca mulatta 76_1 Rhesus monkey 283 70
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 461 115
No Yes Otolemur garnettii 76_3 Small-eared galago 203 44
No Yes Microcebus murinus 76_1 Gray mouse lemur 178 42
No Yes Rattus norvegicus 76_5.0 Norway rat 208 49
No Yes Mus musculus 76_38 House mouse 402 97
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 182 41
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 224 46
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 238 49
No Yes Cavia porcellus 76_3 Domestic guinea pig 223 51
No Yes Oryctolagus cuniculus 76_2 Rabbit 225 50
No Yes Ochotona princeps 76 American pika 188 39
No Yes Tupaia belangeri 76 Northern tree shrew 156 37
No Yes Sus scrofa 76_10.2 Pig 167 58
No Yes Bos taurus 76_3.1 Cattle 211 52
No Yes Ovis aries 76_3.1 Sheep 271 58
No Yes Vicugna pacos 76_1 Alpaca 117 23
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 196 45
No Yes Mustela putorius furo 76_1.0 Domestic ferret 233 47
No Yes Ailuropoda melanoleuca 76_1 Giant panda 261 52
No Yes Canis familiaris 76_3.1 Dog 374 66
No Yes Felis catus 76_6.2 Domestic cat 246 53
No Yes Equus caballus 76_2 Horse 321 60
No Yes Myotis lucifugus 76_2.0 Little brown bat 187 45
No Yes Pteropus vampyrus 76_1 Large flying fox 203 43
No Yes Sorex araneus 76_1 European shrew 106 25
No Yes Erinaceus europaeus 76 Western European hedgehog 139 33
No Yes Procavia capensis 76_1 Cape rock hyrax 174 36
No Yes Loxodonta africana 76_3 African savanna elephant 236 56
No Yes Echinops telfairi 76 Small Madagascar hedgehog 144 32
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 268 57
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 117 25
No Yes Macropus eugenii 76_1.0 Tammar wallaby 183 39
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 228 61
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 214 49
No Yes Ornithorhynchus anatinus 76_5 Platypus 206 53
No Yes Saccoglossus kowalevskii v3.0   1261 297
No Yes Petromyzon marinus 76_7.0 Sea lamprey 203 25
No Yes Meleagris gallopavo 76_2 Turkey 201 50
No Yes Gallus gallus 76_4 Chicken 222 45
No Yes Anas platyrhynchos 76_1.0 Mallard 185 45
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 193 44
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 218 43
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 212 59
No Yes Anolis carolinensis 76_2.0 Green anole 230 49
No Yes Xenopus laevis African clawed frog 176 45
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 231 62
No Yes Latimeria chalumnae 76_1 Coelacanth 249 52
No Yes Lepisosteus oculatus 76 Spotted gar 373 70
No Yes Gadus morhua 76_1 Atlantic cod 251 50
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 445 69
No Yes Takifugu rubripes 76_4 Torafugu 1153 201
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 365 68
No Yes Oryzias latipes 76_1 Japanese medaka 304 56
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 308 56
No Yes Poecilia formosa 76 Amazon molly 313 57
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 440 81
No Yes Astyanax mexicanus 76 Mexican tetra 293 73
No Yes Danio rerio 76_9 Zebrafish 537 103
No Yes Oikopleura dioica   54 30
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 454 80
No Yes Ciona intestinalis 76 Vase tunicate 156 67
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 601 193
No Yes Adineta vaga   274 125
No Yes Octopus bimaculoides 280   398 81
No Yes Crassostrea gigas 22 Pacific oyster 237 86
No Yes Lottia gigantea Owl limpet 212 60
No Yes Helobdella robusta   208 57
No Yes Capitella sp. I   359 115
No Yes Danaus plexippus OGS1.0 Monarch butterfly 163 38
No Yes Heliconius melpomene Postman butterfly 145 29
No Yes Bombyx mori Domestic silkworm 97 41
No Yes Nasonia vitripennis Jewel wasp 89 27
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 323 64
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 128 38
No Yes Linepithema humile v1.1 Argentine ant 122 43
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 116 43
No Yes Solenopsis invicta v.2.2.3 Red fire ant 98 38
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 126 36
No Yes Atta cephalotes v1.1   125 40
No Yes Camponotus floridanus v3.3 Florida carpenter ant 131 35
No Yes Lucilia cuprina Australian sheep blowfly 189 33
No Yes Drosophila grimshawi 1.3   174 37
No Yes Drosophila willistoni 1.3   172 39
No Yes Drosophila pseudoobscura 2.13   181 42
No Yes Drosophila persimilis 1.3   170 43
No Yes Drosophila suzukii   171 33
No Yes Drosophila yakuba 1.3   172 38
No Yes Drosophila simulans 1.3   99 33
No Yes Drosophila sechellia 1.3   155 40
No Yes Drosophila melanogaster 76_5 Fruit fly 643 97
No Yes Drosophila erecta 1.3   173 37
No Yes Drosophila ananassae 1.3   157 32
No Yes Drosophila virilis 1.2   158 36
No Yes Drosophila mojavensis 1.3   171 37
No Yes Megaselia scalaris 22   44 19
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 166 35
No Yes Culex pipiens quinquefasciatus Southern house mosquito 107 38
No Yes Anopheles darlingi 22 American malaria mosquito 118 28
No Yes Anopheles gambiae 49_3j African malaria mosquito 161 32
No Yes Tribolium castaneum 3.0 Red flour beetle 179 43
No Yes Pediculus humanus corporis (Early assembly) Human body louse 171 34
No Yes Acyrthosiphon pisum Pea aphid 150 36
No Yes Rhodnius prolixus 22   125 30
No Yes Daphnia pulex Common water flea 221 61
No Yes Strigamia maritima 22   202 47
No Yes Sarcoptes scabiei   128 42
No Yes Tetranychus urticae Two-spotted spider mite 193 71
No Yes Ixodes scapularis (Preliminary) Black-legged tick 139 44
No Yes Pristionchus pacificus   91 28
No Yes Meloidogyne incognita Southern root-knot nematode 95 18
No Yes Meloidogyne hapla   27 13
No Yes Onchocerca volvulus 22   73 17
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 129 27
No Yes Caenorhabditis japonica   103 24
No Yes Caenorhabditis brenneri   168 39
No Yes Caenorhabditis remanei   123 29
No Yes Caenorhabditis elegans 76_235 Roundworm 177 44
No Yes Caenorhabditis briggsae 2   118 26
No Yes Trichinella spiralis 22   119 32
No Yes Hymenolepis microstoma   45 11
No Yes Echinococcus multilocularis   39 13
No Yes Echinococcus granulosus   38 12
No Yes Taenia solium Pork tapeworm 35 17
No Yes Schistosoma mansoni   18 9
No Yes Mnemiopsis leidyi Sea walnut 413 204
No Yes Thelohanellus kitauei   270 126
No Yes Acropora digitifera v1.0   105 35
No Yes Nematostella vectensis 1.0 Starlet sea anemone 144 35
No Yes Hydra vulgaris   77 17
No Yes Amphimedon queenslandica   13 3
No Yes Trichoplax adhaerens   103 18
No Yes Proterospongia sp. ATCC 50818   2 2
No Yes Monosiga brevicollis   17 17
No Yes Sphaeroforma arctica JP610   1 1
No Yes Capsaspora owczarzaki ATCC 30864   2 2
No Yes Rhizopus oryzae RA 99-880   1 1
No Yes Rhizomucor miehei CAU432   1 1
No Yes Sphaerobolus stellatus v1.0   1 1
No Yes Tulasnella calospora AL13/4D v1.0   1 1
No Yes Botrytis cinerea B05.10   1 1
No Yes Sclerotinia sclerotiorum   1 1
No Yes Zasmidium cellare ATCC 36951 v1.0   1 1
No Yes Paracoccidioides brasiliensis Pb18   1 1
No Yes Histoplasma capsulatum class NAmI strain WU24   1 1
No Yes Penicillium chrysogenum Wisconsin 54-1255   1 1
No Yes Penicillium chrysogenum v1.0   1 1
No Yes Aspergillus acidus v1.0   1 1
No Yes Aspergillus brasiliensis v1.0   1 1
No Yes Aspergillus terreus NIH2624   1 1
No Yes Aspergillus tubingensis v1.0   1 1
No Yes Aspergillus niger 22   1 1
No Yes Aspergillus niger ATCC 1015   1 1
No Yes Tuber melanosporum Mel28 22   1 1
No Yes Tuber melanosporum Vittad Perigord truffle 1 1
No Yes Saccharomyces paradoxus MIT   1 1
No Yes Schizosaccharomyces japonicus yFS275   1 1
No Yes Catenaria anguillulae PL171 v1.0   1 1
No Yes Allomyces macrogynus ATCC 38327   1 1
No Yes Dictyostelium purpureum   1 1
No Yes Gossypium raimondii v221   2 2
No Yes Citrus clementina v165   2 2
No Yes Citrus sinensis v154 Sweet orange 2 2
No Yes Manihot esculenta v147 Cassava 1 1
No Yes Populus trichocarpa v156 Black cottonwood 1 1
No Yes Solanum lycopersicum v.2.3 Tomato 1 1
No Yes Solanum tuberosum Potato 3 3
No Yes Triticum aestivum 22 Bread wheat 5 5
No Yes Brachypodium distachyon Stiff brome 3 3
No Yes Panicum virgatum v202 Switchgrass 1 1
No Yes Musa balbisiana Balbis banana 1 1
No Yes Musa acuminata 22 Wild Malaysian banana 2 2
No Yes Coccomyxa subellipsoidea sp. C-169 v2   1 1
No Yes Volvox carteri f. nagariensis   1 1
No Yes Volvox carteri v199   1 1
No Yes Chlamydomonas reinhardtii 4.0   1 1
No Yes Thecamonas trahens ATCC 50062   1 1
No Yes Bigelowiella natans CCMP2755 22   2 2
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   1 1
No Yes Trypanosoma vivax   1 1
No Yes Trypanosoma congolense 2.4   1 1
No Yes Trypanosoma brucei gambiense v4.1   1 1
No Yes Trypanosoma brucei TREU927 v4.1   1 1
No Yes Pythium iwayamai DAOM BR242034 22   1 1
No Yes Pythium vexans DAOM BR484 22   1 1
No Yes Phytophthora sojae 1.1   1 1
No Yes Perkinsus marinus ATCC 50983   2 2
No Yes Naegleria gruberi   1 1
No Yes Trichomonas vaginalis   8 6
No Yes Emiliania huxleyi CCMP1516   1 1
No Yes Haliangium ochraceum DSM 14365   4 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 272 61
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 446 71
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 209 34
No Yes Ascaris suum Victoria/Ghent Pig roundworm 106 28
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 150 35
No Yes Cryptococcus neoformans var. grubii H99   1 1
No Yes Cryptococcus neoformans B-3501A   1 1
No Yes Cryptococcus neoformans JEC21   1 1
No Yes Paracoccidioides brasiliensis Pb03   1 1
No Yes Histoplasma capsulatum H88   1 1
No Yes Histoplasma capsulatum G186AR   1 1
No Yes Batrachochytrium dendrobatidis JAM81   1 1
No Yes Trypanosoma brucei Lister 427 v4.1   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 505 148
No Yes Homo sapiens (NCBI version) Human 303 75
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 220 45
No Yes Heliconius numata (Incomplete)   12 9
No Yes Loa loa v3.3 (Request) Eye worm 74 20
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 63 26
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 55 14
No Yes Moniliophthora perniciosa FA553 (Genome survey)   1 1
No Yes Picea sitchensis (Incomplete) Sitka spruce 1 1
No Yes Ricinus communis (Early assembly) Castor bean 1 1
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   3 3
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 1 1
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 1 1
No Yes Homo sapiens 69_37 Human 219 45
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 212 44
No Yes Gorilla gorilla 69_3.1 Western gorilla 191 46
No Yes Pongo abelii 69_2 Sumatran orangutan 201 44
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 188 47
No Yes Macaca mulatta 69_1 Rhesus monkey 192 45
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 216 49
No Yes Otolemur garnettii 69_3 Small-eared galago 202 43
No Yes Microcebus murinus 69_1 Gray mouse lemur 178 42
No Yes Rattus norvegicus 69_3.4 Norway rat 203 51
No Yes Mus musculus 69_38 House mouse 222 47
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 182 41
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 193 41
No Yes Cavia porcellus 69_3 Domestic guinea pig 199 49
No Yes Oryctolagus cuniculus 69_2 Rabbit 202 46
No Yes Ochotona princeps 69 American pika 188 39
No Yes Tupaia belangeri 69 Northern tree shrew 156 37
No Yes Sus scrofa 69_10.2 Pig 143 48
No Yes Bos taurus 69_3.1 Cattle 205 47
No Yes Vicugna pacos 69_1 Alpaca 117 23
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 196 45
No Yes Mustela putorius furo 69_1.0 Domestic ferret 230 46
No Yes Ailuropoda melanoleuca 69_1 Giant panda 224 48
No Yes Canis familiaris 69_3.1 Dog 243 49
No Yes Felis catus 69 Domestic cat 141 37
No Yes Equus caballus 69_2 Horse 223 52
No Yes Myotis lucifugus 69_2.0 Little brown bat 183 43
No Yes Pteropus vampyrus 69_1 Large flying fox 203 43
No Yes Sorex araneus 69_1 European shrew 106 25
No Yes Erinaceus europaeus 69 Western European hedgehog 139 33
No Yes Procavia capensis 69_1 Cape rock hyrax 174 36
No Yes Loxodonta africana 69_3 African savanna elephant 187 43
No Yes Echinops telfairi 69 Small Madagascar hedgehog 144 32
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 144 28
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 117 25
No Yes Macropus eugenii 69_1.0 Tammar wallaby 183 39
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 181 44
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 212 48
No Yes Ornithorhynchus anatinus 69_5 Platypus 175 47
No Yes Petromyzon marinus 69_7.0 Sea lamprey 168 21
No Yes Meleagris gallopavo 69_2 Turkey 169 44
No Yes Gallus gallus 69_2 Chicken 171 37
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 187 40
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 175 46
No Yes Anolis carolinensis 69_2.0 Green anole 223 47
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 220 53
No Yes Latimeria chalumnae 69_1 Coelacanth 192 43
No Yes Gadus morhua 69_1 Atlantic cod 237 47
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 307 53
No Yes Takifugu rubripes 69_4 Torafugu 272 48
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 314 55
No Yes Oryzias latipes 69_1 Japanese medaka 275 44
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 308 56
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 337 58
No Yes Danio rerio 69_9 Zebrafish 342 61
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 155 51
No Yes Ciona intestinalis 69 Vase tunicate 143 62
No Yes Drosophila melanogaster 69_5 Fruit fly 168 35
No Yes Caenorhabditis elegans 69_215 Roundworm 126 26
No Yes 1_Upper_euphotic (meta-genome)   3 2
No Yes 3_Below_base_of_euphotic (meta-genome)   1 1
No Yes 5_Below_upper_mesopelagic (meta-genome)   1 1
No Yes 6_Upper_euphotic (meta-genome)   2 1
No Yes 7_Oxygen_minimum_layer (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   1 1
No Yes NCBI 2017_08 genome   143684 28917
No Yes Protozoadb 2010_08 (Protozoadb)   18 14
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   8 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   2 2
No Yes STRING v9.0.5 (STRING)   10524 2529
No Yes Uniprot 2018_03 genome   103788 23713
No Yes Global Ocean Sampling Expedition (GOS)   193 113
No Yes PDB chains (SCOP 1.75) (PDB)   26 18
No Yes Protein Data Bank (all PDB sequenc)   207 160
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   244 244
No Yes TargetDB (Targets)   96 34

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