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  Home > Genomes > Loxodonta africana 76_3 > LDL receptor-like module domains


LDL receptor-like module superfamily domain assignments
in
Loxodonta africana 76_3

Assignment details

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Loxodonta africana 76_3 has 236 significant domains in 56 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSLAFP00000000302   0.000000000089   87-128   LDL receptor-like module  
  0.000000000223   130-168   LDL receptor-like module  
  0.000000000275   10-47   LDL receptor-like module  
  0.000000000288   222-260   LDL receptor-like module  
  0.000000000471   183-220   LDL receptor-like module  
  0.000000000746   50-88   LDL receptor-like module  
  0.000000111   262-299   LDL receptor-like module  
ENSLAFP00000000735   0.0000000106   260-296   LDL receptor-like module  
  0.000223   419-452   LDL receptor-like module  
ENSLAFP00000001713   0.0000982   176-209   LDL receptor-like module  
ENSLAFP00000001716   0.000000000497   300-336   LDL receptor-like module  
  0.00000000109   343-385   LDL receptor-like module  
  0.00000000196   259-295   LDL receptor-like module  
  0.0000000445   174-213   LDL receptor-like module  
ENSLAFP00000002740   0.000000641   101-133   LDL receptor-like module  
ENSLAFP00000002744   0.000000275   93-126   LDL receptor-like module  
ENSLAFP00000002810   0.000000314   60-101   LDL receptor-like module  
ENSLAFP00000002816   0.00000275   1-35   LDL receptor-like module  
ENSLAFP00000004175   0.0000000838   53-92   LDL receptor-like module  
ENSLAFP00000005024   0.0000000000537   795-837   LDL receptor-like module  
  0.000000000117   3515-3555   LDL receptor-like module  
  0.000000000157   3599-3644   LDL receptor-like module  
  0.00000000017   876-915   LDL receptor-like module  
  0.000000000223   3557-3593   LDL receptor-like module  
  0.00000000034   3433-3473   LDL receptor-like module  
  0.00000000038   2639-2676   LDL receptor-like module  
  0.000000000393   960-997   LDL receptor-like module  
  0.000000000393   3315-3355   LDL receptor-like module  
  0.000000000419   836-878   LDL receptor-like module  
  0.00000000055   921-958   LDL receptor-like module  
  0.000000000812   3477-3516   LDL receptor-like module  
  0.00000000144   1004-1044   LDL receptor-like module  
  0.0000000017   2679-2713   LDL receptor-like module  
  0.00000000196   2506-2546   LDL receptor-like module  
  0.0000000034   2760-2796   LDL receptor-like module  
  0.0000000034   3394-3431   LDL receptor-like module  
  0.00000000628   2546-2585   LDL receptor-like module  
  0.00000000956   2799-2838   LDL receptor-like module  
  0.0000000114   3277-3312   LDL receptor-like module  
  0.0000000114   3357-3395   LDL receptor-like module  
  0.0000000157   2719-2753   LDL receptor-like module  
  0.0000000223   3685-3722   LDL receptor-like module  
  0.000000183   2470-2507   LDL receptor-like module  
  0.000000484   17-53   LDL receptor-like module  
  0.000000681   1053-1087   LDL receptor-like module  
  0.00000123   1090-1125   LDL receptor-like module  
  0.0000013   2605-2635   LDL receptor-like module  
  0.0000111   3641-3677   LDL receptor-like module  
ENSLAFP00000006102   0.0000000131   292-328   LDL receptor-like module  
ENSLAFP00000006800   0.0000209   65-105   LDL receptor-like module  
  0.000209   28-63   LDL receptor-like module  
ENSLAFP00000006958   0.000000000785   1298-1336   LDL receptor-like module  
  0.0000000072   1220-1259   LDL receptor-like module  
  0.00000000746   1260-1296   LDL receptor-like module  
ENSLAFP00000006979   0.000000000017   437-475   LDL receptor-like module  
  0.00000000196   151-187   LDL receptor-like module  
  0.000000144   199-241   LDL receptor-like module  
  0.000000272   398-436   LDL receptor-like module  
  0.00000072   361-398   LDL receptor-like module  
ENSLAFP00000007621   0.0000000000249   1424-1461   LDL receptor-like module  
  0.0000000000615   1203-1241   LDL receptor-like module  
  0.0000000000785   1331-1367   LDL receptor-like module  
  0.000000000314   1160-1201   LDL receptor-like module  
  0.00000000511   1518-1557   LDL receptor-like module  
  0.00000000628   1378-1411   LDL receptor-like module  
  0.0000000103   1246-1279   LDL receptor-like module  
  0.000000013   1478-1515   LDL receptor-like module  
  0.000000196   1123-1161   LDL receptor-like module  
  0.00000393   1283-1318   LDL receptor-like module  
ENSLAFP00000007640   0.000000000236   449-485   LDL receptor-like module  
  0.000000000445   522-557   LDL receptor-like module  
  0.000000000838   485-522   LDL receptor-like module  
  0.000000757   561-601   LDL receptor-like module  
ENSLAFP00000008183   0.0000000367   292-328   LDL receptor-like module  
ENSLAFP00000009771   0.000000000929   265-301   LDL receptor-like module  
  0.000000101   228-262   LDL receptor-like module  
ENSLAFP00000010291   0.000000000471   211-251   LDL receptor-like module  
  0.0000000011   3-40   LDL receptor-like module  
  0.00000000117   178-212   LDL receptor-like module  
  0.00000000916   122-158   LDL receptor-like module  
  0.0000000223   38-81   LDL receptor-like module  
  0.000000196   255-293   LDL receptor-like module  
ENSLAFP00000010498   0.00000000249   23-62   LDL receptor-like module  
ENSLAFP00000011440   0.0000000000109   1039-1077   LDL receptor-like module  
  0.000000000034   3600-3639   LDL receptor-like module  
  0.0000000000602   2708-2749   LDL receptor-like module  
  0.0000000000982   1239-1279   LDL receptor-like module  
  0.000000000144   1079-1117   LDL receptor-like module  
  0.000000000196   2958-3002   LDL receptor-like module  
  0.000000000393   3770-3807   LDL receptor-like module  
  0.000000000419   996-1034   LDL receptor-like module  
  0.000000000419   3898-3935   LDL receptor-like module  
  0.000000000511   2830-2869   LDL receptor-like module  
  0.000000000589   2875-2912   LDL receptor-like module  
  0.000000000615   3726-3766   LDL receptor-like module  
  0.000000000733   1121-1158   LDL receptor-like module  
  0.000000000877   3558-3602   LDL receptor-like module  
  0.00000000122   3691-3728   LDL receptor-like module  
  0.00000000157   2-37   LDL receptor-like module  
  0.00000000249   3483-3518   LDL receptor-like module  
  0.00000000288   3519-3561   LDL receptor-like module  
  0.00000000393   156-192   LDL receptor-like module  
  0.0000000055   2999-3041   LDL receptor-like module  
  0.00000000576   2671-2709   LDL receptor-like module  
  0.00000000785   78-121   LDL receptor-like module  
  0.00000000785   238-275   LDL receptor-like module  
  0.00000000851   3813-3849   LDL receptor-like module  
  0.00000000864   40-75   LDL receptor-like module  
  0.00000000877   3047-3087   LDL receptor-like module  
  0.0000000102   1159-1197   LDL receptor-like module  
  0.0000000122   190-230   LDL receptor-like module  
  0.000000017   1200-1237   LDL receptor-like module  
  0.0000000511   2786-2832   LDL receptor-like module  
  0.0000000785   2916-2960   LDL receptor-like module  
  0.000000089   120-154   LDL receptor-like module  
  0.000000144   3855-3893   LDL receptor-like module  
  0.00000223   2754-2790   LDL receptor-like module  
  0.00000484   3654-3687   LDL receptor-like module  
  0.0000055   1285-1320   LDL receptor-like module  
ENSLAFP00000011493   0.0000000000301   264-304   LDL receptor-like module  
  0.000000000183   228-266   LDL receptor-like module  
  0.00000000038   143-183   LDL receptor-like module  
  0.000000000497   309-345   LDL receptor-like module  
  0.000000000524   68-106   LDL receptor-like module  
  0.00000000458   187-225   LDL receptor-like module  
  0.00000000471   104-142   LDL receptor-like module  
  0.00000157   26-68   LDL receptor-like module  
ENSLAFP00000011740   0.00000000236   314-351   LDL receptor-like module  
  0.00000000432   387-428   LDL receptor-like module  
  0.00000000484   38-77   LDL receptor-like module  
  0.0000000055   81-114   LDL receptor-like module  
  0.000000017   117-158   LDL receptor-like module  
  0.0000000223   4-40   LDL receptor-like module  
  0.000196   354-385   LDL receptor-like module  
ENSLAFP00000011832   0.00000000000249   78-120   LDL receptor-like module  
  0.0000000000524   16-52   LDL receptor-like module  
ENSLAFP00000011983   0.0000000000733   808-853   LDL receptor-like module  
  0.00000000013   2690-2726   LDL receptor-like module  
  0.000000000196   851-891   LDL receptor-like module  
  0.000000000262   772-809   LDL receptor-like module  
  0.00000000034   2821-2862   LDL receptor-like module  
  0.000000000576   896-934   LDL receptor-like module  
  0.000000000864   935-971   LDL receptor-like module  
  0.00000000157   983-1019   LDL receptor-like module  
  0.00000000183   2476-2517   LDL receptor-like module  
  0.00000000327   2733-2767   LDL receptor-like module  
  0.00000000458   2610-2647   LDL receptor-like module  
  0.0000000115   2650-2692   LDL receptor-like module  
  0.0000000144   2520-2557   LDL receptor-like module  
  0.000000055   2570-2606   LDL receptor-like module  
  0.000000055   3245-3279   LDL receptor-like module  
  0.0000000707   2769-2810   LDL receptor-like module  
  0.000000089   2441-2478   LDL receptor-like module  
  0.000000262   1065-1101   LDL receptor-like module  
  0.000000406   1029-1062   LDL receptor-like module  
ENSLAFP00000012093   0.000000249   27-63   LDL receptor-like module  
ENSLAFP00000012237   0.0000667   215-247   LDL receptor-like module  
ENSLAFP00000012355   0.0000000236   312-349   LDL receptor-like module  
ENSLAFP00000012733   0.000000000209   686-725   LDL receptor-like module  
  0.000000602   228-266   LDL receptor-like module  
ENSLAFP00000012738   0.00000000000301   32-68   LDL receptor-like module  
  0.00000000000484   234-273   LDL receptor-like module  
  0.0000000000563   148-188   LDL receptor-like module  
  0.00000000017   187-225   LDL receptor-like module  
  0.000000000183   272-312   LDL receptor-like module  
  0.000000000393   70-108   LDL receptor-like module  
  0.00000000903   107-149   LDL receptor-like module  
  0.0000000209   318-354   LDL receptor-like module  
ENSLAFP00000014083   0.000000000668   1325-1363   LDL receptor-like module  
  0.0000000013   1246-1286   LDL receptor-like module  
  0.0000000038   1287-1323   LDL receptor-like module  
ENSLAFP00000014218   0.000000864   76-112   LDL receptor-like module  
  0.0000327   163-204   LDL receptor-like module  
  0.000102   128-157   LDL receptor-like module  
ENSLAFP00000014277   0.0000000000157   29-65   LDL receptor-like module  
  0.000000000144   110-147   LDL receptor-like module  
  0.000000000445   70-107   LDL receptor-like module  
ENSLAFP00000016797   0.00000000124   137-175   LDL receptor-like module  
ENSLAFP00000019000   0.0000000000126   163-200   LDL receptor-like module  
  0.000000406   124-161   LDL receptor-like module  
  0.000749   75-122   LDL receptor-like module  
ENSLAFP00000019530   0.000000000034   471-508   LDL receptor-like module  
  0.00000101   432-469   LDL receptor-like module  
  0.00196   383-430   LDL receptor-like module  
ENSLAFP00000019711   0.0000000000236   1284-1321   LDL receptor-like module  
  0.000000000072   1191-1227   LDL receptor-like module  
  0.0000000000746   1063-1103   LDL receptor-like module  
  0.000000000288   1020-1061   LDL receptor-like module  
  0.00000000471   1378-1417   LDL receptor-like module  
  0.00000000576   1238-1271   LDL receptor-like module  
  0.00000000877   1106-1139   LDL receptor-like module  
  0.000000012   1338-1375   LDL receptor-like module  
  0.000000367   987-1021   LDL receptor-like module  
  0.00000367   1143-1178   LDL receptor-like module  
ENSLAFP00000019891   0.0000000000367   25-67   LDL receptor-like module  
ENSLAFP00000019995   0.0000000000576   1371-1411   LDL receptor-like module  
  0.0000000000681   1455-1500   LDL receptor-like module  
  0.000000000106   1413-1449   LDL receptor-like module  
  0.000000000157   1289-1329   LDL receptor-like module  
  0.000000000196   494-531   LDL receptor-like module  
  0.000000000196   1171-1215   LDL receptor-like module  
  0.000000000393   1333-1372   LDL receptor-like module  
  0.000000000641   534-568   LDL receptor-like module  
  0.000000000942   361-401   LDL receptor-like module  
  0.00000000157   616-652   LDL receptor-like module  
  0.0000000017   1250-1287   LDL receptor-like module  
  0.00000000288   401-440   LDL receptor-like module  
  0.00000000406   654-693   LDL receptor-like module  
  0.00000000524   1213-1251   LDL receptor-like module  
  0.0000000055   1133-1168   LDL receptor-like module  
  0.00000000798   574-608   LDL receptor-like module  
  0.0000000111   1541-1578   LDL receptor-like module  
  0.0000000877   325-362   LDL receptor-like module  
  0.000000628   460-490   LDL receptor-like module  
  0.00000537   1497-1533   LDL receptor-like module  
ENSLAFP00000021182   0.0000000812   40-79   LDL receptor-like module  
ENSLAFP00000021631   0.000000000034   451-488   LDL receptor-like module  
  0.00000101   412-449   LDL receptor-like module  
  0.00196   363-410   LDL receptor-like module  
ENSLAFP00000021683   0.00000123   15-52   LDL receptor-like module  
  0.000055   234-273   LDL receptor-like module  
ENSLAFP00000022307   0.0000000000484   2-36   LDL receptor-like module  
ENSLAFP00000022347   0.00000209   1-35   LDL receptor-like module  
ENSLAFP00000023410   0.00000000942   91-129   LDL receptor-like module  
ENSLAFP00000023472   0.000000275   63-102   LDL receptor-like module  
ENSLAFP00000023664   0.000000000798   1326-1364   LDL receptor-like module  
  0.00000000733   1248-1287   LDL receptor-like module  
  0.00000000759   1288-1324   LDL receptor-like module  
ENSLAFP00000024128   0.0000589   52-84   LDL receptor-like module  
ENSLAFP00000024776   0.0000000103   247-283   LDL receptor-like module  
  0.000223   406-439   LDL receptor-like module  
ENSLAFP00000024841   0.000000275   6-38   LDL receptor-like module  
ENSLAFP00000025718   0.0000000903   109-148   LDL receptor-like module  
ENSLAFP00000025813   0.000000000668   1322-1360   LDL receptor-like module  
  0.0000000013   1243-1283   LDL receptor-like module  
  0.0000000038   1284-1320   LDL receptor-like module  
ENSLAFP00000025996   0.0000000000275   139-179   LDL receptor-like module  
  0.0000000000314   398-435   LDL receptor-like module  
  0.0000602   305-353   LDL receptor-like module  
  0.00126   356-397   LDL receptor-like module  
ENSLAFP00000027654   0.000000224   123-162   LDL receptor-like module  
ENSLAFP00000028124   0.0000209   68-108   LDL receptor-like module  
  0.000209   31-66   LDL receptor-like module  
ENSLAFP00000028362   0.000000000223   89-129   LDL receptor-like module  
  0.00000000107   57-91   LDL receptor-like module  
  0.00000000995   2-41   LDL receptor-like module  
 
Weak hits:
ENSLAFP00000017846   0.000196   150-174   LDL receptor-like module  

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Select to display   Genome       Domains   Proteins
No Yes ALL   327216 327216
No Yes Homo sapiens 76_38 Human 548 151
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 216 47
No Yes Gorilla gorilla 76_3.1 Western gorilla 276 65
No Yes Pongo abelii 76_2 Sumatran orangutan 204 46
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 205 51
No Yes Papio anubis 76 Olive baboon 223 47
No Yes Macaca mulatta 76_1 Rhesus monkey 283 70
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 461 115
No Yes Otolemur garnettii 76_3 Small-eared galago 203 44
No Yes Microcebus murinus 76_1 Gray mouse lemur 178 42
No Yes Rattus norvegicus 76_5.0 Norway rat 208 49
No Yes Mus musculus 76_38 House mouse 402 97
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 182 41
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 224 46
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 238 49
No Yes Cavia porcellus 76_3 Domestic guinea pig 223 51
No Yes Oryctolagus cuniculus 76_2 Rabbit 225 50
No Yes Ochotona princeps 76 American pika 188 39
No Yes Tupaia belangeri 76 Northern tree shrew 156 37
No Yes Sus scrofa 76_10.2 Pig 167 58
No Yes Bos taurus 76_3.1 Cattle 211 52
No Yes Ovis aries 76_3.1 Sheep 271 58
No Yes Vicugna pacos 76_1 Alpaca 117 23
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 196 45
No Yes Mustela putorius furo 76_1.0 Domestic ferret 233 47
No Yes Ailuropoda melanoleuca 76_1 Giant panda 261 52
No Yes Canis familiaris 76_3.1 Dog 374 66
No Yes Felis catus 76_6.2 Domestic cat 246 53
No Yes Equus caballus 76_2 Horse 321 60
No Yes Myotis lucifugus 76_2.0 Little brown bat 187 45
No Yes Pteropus vampyrus 76_1 Large flying fox 203 43
No Yes Sorex araneus 76_1 European shrew 106 25
No Yes Erinaceus europaeus 76 Western European hedgehog 139 33
No Yes Procavia capensis 76_1 Cape rock hyrax 174 36
No Yes Loxodonta africana 76_3 African savanna elephant 236 56
No Yes Echinops telfairi 76 Small Madagascar hedgehog 144 32
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 268 57
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 117 25
No Yes Macropus eugenii 76_1.0 Tammar wallaby 183 39
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 228 61
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 214 49
No Yes Ornithorhynchus anatinus 76_5 Platypus 206 53
No Yes Saccoglossus kowalevskii v3.0   1261 297
No Yes Petromyzon marinus 76_7.0 Sea lamprey 203 25
No Yes Meleagris gallopavo 76_2 Turkey 201 50
No Yes Gallus gallus 76_4 Chicken 222 45
No Yes Anas platyrhynchos 76_1.0 Mallard 185 45
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 193 44
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 218 43
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 212 59
No Yes Anolis carolinensis 76_2.0 Green anole 230 49
No Yes Xenopus laevis African clawed frog 176 45
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 231 62
No Yes Latimeria chalumnae 76_1 Coelacanth 249 52
No Yes Lepisosteus oculatus 76 Spotted gar 373 70
No Yes Gadus morhua 76_1 Atlantic cod 251 50
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 445 69
No Yes Takifugu rubripes 76_4 Torafugu 1153 201
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 365 68
No Yes Oryzias latipes 76_1 Japanese medaka 304 56
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 308 56
No Yes Poecilia formosa 76 Amazon molly 313 57
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 440 81
No Yes Astyanax mexicanus 76 Mexican tetra 293 73
No Yes Danio rerio 76_9 Zebrafish 537 103
No Yes Oikopleura dioica   54 30
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 454 80
No Yes Ciona intestinalis 76 Vase tunicate 156 67
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 601 193
No Yes Adineta vaga   274 125
No Yes Octopus bimaculoides 280   398 81
No Yes Crassostrea gigas 22 Pacific oyster 237 86
No Yes Lottia gigantea Owl limpet 212 60
No Yes Helobdella robusta   208 57
No Yes Capitella sp. I   359 115
No Yes Danaus plexippus OGS1.0 Monarch butterfly 163 38
No Yes Heliconius melpomene Postman butterfly 145 29
No Yes Bombyx mori Domestic silkworm 97 41
No Yes Nasonia vitripennis Jewel wasp 89 27
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 323 64
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 128 38
No Yes Linepithema humile v1.1 Argentine ant 122 43
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 116 43
No Yes Solenopsis invicta v.2.2.3 Red fire ant 98 38
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 126 36
No Yes Atta cephalotes v1.1   125 40
No Yes Camponotus floridanus v3.3 Florida carpenter ant 131 35
No Yes Lucilia cuprina Australian sheep blowfly 189 33
No Yes Drosophila grimshawi 1.3   174 37
No Yes Drosophila willistoni 1.3   172 39
No Yes Drosophila pseudoobscura 2.13   181 42
No Yes Drosophila persimilis 1.3   170 43
No Yes Drosophila suzukii   171 33
No Yes Drosophila yakuba 1.3   172 38
No Yes Drosophila simulans 1.3   99 33
No Yes Drosophila sechellia 1.3   155 40
No Yes Drosophila melanogaster 76_5 Fruit fly 643 97
No Yes Drosophila erecta 1.3   173 37
No Yes Drosophila ananassae 1.3   157 32
No Yes Drosophila virilis 1.2   158 36
No Yes Drosophila mojavensis 1.3   171 37
No Yes Megaselia scalaris 22   44 19
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 166 35
No Yes Culex pipiens quinquefasciatus Southern house mosquito 107 38
No Yes Anopheles darlingi 22 American malaria mosquito 118 28
No Yes Anopheles gambiae 49_3j African malaria mosquito 161 32
No Yes Tribolium castaneum 3.0 Red flour beetle 179 43
No Yes Pediculus humanus corporis (Early assembly) Human body louse 171 34
No Yes Acyrthosiphon pisum Pea aphid 150 36
No Yes Rhodnius prolixus 22   125 30
No Yes Daphnia pulex Common water flea 221 61
No Yes Strigamia maritima 22   202 47
No Yes Sarcoptes scabiei   128 42
No Yes Tetranychus urticae Two-spotted spider mite 193 71
No Yes Ixodes scapularis (Preliminary) Black-legged tick 139 44
No Yes Pristionchus pacificus   91 28
No Yes Meloidogyne incognita Southern root-knot nematode 95 18
No Yes Meloidogyne hapla   27 13
No Yes Onchocerca volvulus 22   73 17
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 129 27
No Yes Caenorhabditis japonica   103 24
No Yes Caenorhabditis brenneri   168 39
No Yes Caenorhabditis remanei   123 29
No Yes Caenorhabditis elegans 76_235 Roundworm 177 44
No Yes Caenorhabditis briggsae 2   118 26
No Yes Trichinella spiralis 22   119 32
No Yes Hymenolepis microstoma   45 11
No Yes Echinococcus multilocularis   39 13
No Yes Echinococcus granulosus   38 12
No Yes Taenia solium Pork tapeworm 35 17
No Yes Schistosoma mansoni   18 9
No Yes Mnemiopsis leidyi Sea walnut 413 204
No Yes Thelohanellus kitauei   270 126
No Yes Acropora digitifera v1.0   105 35
No Yes Nematostella vectensis 1.0 Starlet sea anemone 144 35
No Yes Hydra vulgaris   77 17
No Yes Amphimedon queenslandica   13 3
No Yes Trichoplax adhaerens   103 18
No Yes Proterospongia sp. ATCC 50818   2 2
No Yes Monosiga brevicollis   17 17
No Yes Sphaeroforma arctica JP610   1 1
No Yes Capsaspora owczarzaki ATCC 30864   2 2
No Yes Rhizopus oryzae RA 99-880   1 1
No Yes Rhizomucor miehei CAU432   1 1
No Yes Sphaerobolus stellatus v1.0   1 1
No Yes Tulasnella calospora AL13/4D v1.0   1 1
No Yes Botrytis cinerea B05.10   1 1
No Yes Sclerotinia sclerotiorum   1 1
No Yes Zasmidium cellare ATCC 36951 v1.0   1 1
No Yes Paracoccidioides brasiliensis Pb18   1 1
No Yes Histoplasma capsulatum class NAmI strain WU24   1 1
No Yes Penicillium chrysogenum Wisconsin 54-1255   1 1
No Yes Penicillium chrysogenum v1.0   1 1
No Yes Aspergillus acidus v1.0   1 1
No Yes Aspergillus brasiliensis v1.0   1 1
No Yes Aspergillus terreus NIH2624   1 1
No Yes Aspergillus tubingensis v1.0   1 1
No Yes Aspergillus niger 22   1 1
No Yes Aspergillus niger ATCC 1015   1 1
No Yes Tuber melanosporum Mel28 22   1 1
No Yes Tuber melanosporum Vittad Perigord truffle 1 1
No Yes Saccharomyces paradoxus MIT   1 1
No Yes Schizosaccharomyces japonicus yFS275   1 1
No Yes Catenaria anguillulae PL171 v1.0   1 1
No Yes Allomyces macrogynus ATCC 38327   1 1
No Yes Dictyostelium purpureum   1 1
No Yes Gossypium raimondii v221   2 2
No Yes Citrus clementina v165   2 2
No Yes Citrus sinensis v154 Sweet orange 2 2
No Yes Manihot esculenta v147 Cassava 1 1
No Yes Populus trichocarpa v156 Black cottonwood 1 1
No Yes Solanum lycopersicum v.2.3 Tomato 1 1
No Yes Solanum tuberosum Potato 3 3
No Yes Triticum aestivum 22 Bread wheat 5 5
No Yes Brachypodium distachyon Stiff brome 3 3
No Yes Panicum virgatum v202 Switchgrass 1 1
No Yes Musa balbisiana Balbis banana 1 1
No Yes Musa acuminata 22 Wild Malaysian banana 2 2
No Yes Coccomyxa subellipsoidea sp. C-169 v2   1 1
No Yes Volvox carteri f. nagariensis   1 1
No Yes Volvox carteri v199   1 1
No Yes Chlamydomonas reinhardtii 4.0   1 1
No Yes Thecamonas trahens ATCC 50062   1 1
No Yes Bigelowiella natans CCMP2755 22   2 2
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   1 1
No Yes Trypanosoma vivax   1 1
No Yes Trypanosoma congolense 2.4   1 1
No Yes Trypanosoma brucei gambiense v4.1   1 1
No Yes Trypanosoma brucei TREU927 v4.1   1 1
No Yes Pythium iwayamai DAOM BR242034 22   1 1
No Yes Pythium vexans DAOM BR484 22   1 1
No Yes Phytophthora sojae 1.1   1 1
No Yes Perkinsus marinus ATCC 50983   2 2
No Yes Naegleria gruberi   1 1
No Yes Trichomonas vaginalis   8 6
No Yes Emiliania huxleyi CCMP1516   1 1
No Yes Haliangium ochraceum DSM 14365   4 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 272 61
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 446 71
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 209 34
No Yes Ascaris suum Victoria/Ghent Pig roundworm 106 28
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 150 35
No Yes Cryptococcus neoformans var. grubii H99   1 1
No Yes Cryptococcus neoformans B-3501A   1 1
No Yes Cryptococcus neoformans JEC21   1 1
No Yes Paracoccidioides brasiliensis Pb03   1 1
No Yes Histoplasma capsulatum H88   1 1
No Yes Histoplasma capsulatum G186AR   1 1
No Yes Batrachochytrium dendrobatidis JAM81   1 1
No Yes Trypanosoma brucei Lister 427 v4.1   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 505 148
No Yes Homo sapiens (NCBI version) Human 303 75
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 220 45
No Yes Heliconius numata (Incomplete)   12 9
No Yes Loa loa v3.3 (Request) Eye worm 74 20
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 63 26
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 55 14
No Yes Moniliophthora perniciosa FA553 (Genome survey)   1 1
No Yes Picea sitchensis (Incomplete) Sitka spruce 1 1
No Yes Ricinus communis (Early assembly) Castor bean 1 1
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   3 3
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 1 1
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 1 1
No Yes Homo sapiens 69_37 Human 219 45
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 212 44
No Yes Gorilla gorilla 69_3.1 Western gorilla 191 46
No Yes Pongo abelii 69_2 Sumatran orangutan 201 44
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 188 47
No Yes Macaca mulatta 69_1 Rhesus monkey 192 45
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 216 49
No Yes Otolemur garnettii 69_3 Small-eared galago 202 43
No Yes Microcebus murinus 69_1 Gray mouse lemur 178 42
No Yes Rattus norvegicus 69_3.4 Norway rat 203 51
No Yes Mus musculus 69_38 House mouse 222 47
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 182 41
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 193 41
No Yes Cavia porcellus 69_3 Domestic guinea pig 199 49
No Yes Oryctolagus cuniculus 69_2 Rabbit 202 46
No Yes Ochotona princeps 69 American pika 188 39
No Yes Tupaia belangeri 69 Northern tree shrew 156 37
No Yes Sus scrofa 69_10.2 Pig 143 48
No Yes Bos taurus 69_3.1 Cattle 205 47
No Yes Vicugna pacos 69_1 Alpaca 117 23
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 196 45
No Yes Mustela putorius furo 69_1.0 Domestic ferret 230 46
No Yes Ailuropoda melanoleuca 69_1 Giant panda 224 48
No Yes Canis familiaris 69_3.1 Dog 243 49
No Yes Felis catus 69 Domestic cat 141 37
No Yes Equus caballus 69_2 Horse 223 52
No Yes Myotis lucifugus 69_2.0 Little brown bat 183 43
No Yes Pteropus vampyrus 69_1 Large flying fox 203 43
No Yes Sorex araneus 69_1 European shrew 106 25
No Yes Erinaceus europaeus 69 Western European hedgehog 139 33
No Yes Procavia capensis 69_1 Cape rock hyrax 174 36
No Yes Loxodonta africana 69_3 African savanna elephant 187 43
No Yes Echinops telfairi 69 Small Madagascar hedgehog 144 32
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 144 28
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 117 25
No Yes Macropus eugenii 69_1.0 Tammar wallaby 183 39
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 181 44
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 212 48
No Yes Ornithorhynchus anatinus 69_5 Platypus 175 47
No Yes Petromyzon marinus 69_7.0 Sea lamprey 168 21
No Yes Meleagris gallopavo 69_2 Turkey 169 44
No Yes Gallus gallus 69_2 Chicken 171 37
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 187 40
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 175 46
No Yes Anolis carolinensis 69_2.0 Green anole 223 47
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 220 53
No Yes Latimeria chalumnae 69_1 Coelacanth 192 43
No Yes Gadus morhua 69_1 Atlantic cod 237 47
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 307 53
No Yes Takifugu rubripes 69_4 Torafugu 272 48
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 314 55
No Yes Oryzias latipes 69_1 Japanese medaka 275 44
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 308 56
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 337 58
No Yes Danio rerio 69_9 Zebrafish 342 61
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 155 51
No Yes Ciona intestinalis 69 Vase tunicate 143 62
No Yes Drosophila melanogaster 69_5 Fruit fly 168 35
No Yes Caenorhabditis elegans 69_215 Roundworm 126 26
No Yes 1_Upper_euphotic (meta-genome)   3 2
No Yes 3_Below_base_of_euphotic (meta-genome)   1 1
No Yes 5_Below_upper_mesopelagic (meta-genome)   1 1
No Yes 6_Upper_euphotic (meta-genome)   2 1
No Yes 7_Oxygen_minimum_layer (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   1 1
No Yes NCBI 2017_08 genome   143684 28917
No Yes Protozoadb 2010_08 (Protozoadb)   18 14
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   8 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   2 2
No Yes STRING v9.0.5 (STRING)   10524 2529
No Yes Uniprot 2018_03 genome   103788 23713
No Yes Global Ocean Sampling Expedition (GOS)   193 113
No Yes PDB chains (SCOP 1.75) (PDB)   26 18
No Yes Protein Data Bank (all PDB sequenc)   207 160
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   244 244
No Yes TargetDB (Targets)   96 34

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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