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  Home > Genomes > Taeniopygia guttata 69_3.2.4 > LDL receptor-like module domains


LDL receptor-like module superfamily domain assignments
in
Taeniopygia guttata 69_3.2.4

Assignment details

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Taeniopygia guttata 69_3.2.4 has 187 significant domains in 40 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSTGUP00000000098   0.000000000144   1-36   LDL receptor-like module  
ENSTGUP00000000395   0.00000000000367   119-159   LDL receptor-like module  
ENSTGUP00000000483   0.0000000000209   1228-1265   LDL receptor-like module  
  0.0000000000236   1101-1139   LDL receptor-like module  
  0.0000000000484   1058-1099   LDL receptor-like module  
  0.000000000262   981-1019   LDL receptor-like module  
  0.000000000589   1275-1309   LDL receptor-like module  
  0.00000000262   1144-1177   LDL receptor-like module  
  0.0000000785   1026-1059   LDL receptor-like module  
  0.00000209   1180-1215   LDL receptor-like module  
ENSTGUP00000000528   0.000000000288   461-498   LDL receptor-like module  
  0.000000000471   427-462   LDL receptor-like module  
  0.00000000089   497-536   LDL receptor-like module  
  0.00000157   540-580   LDL receptor-like module  
ENSTGUP00000001271   0.0000000838   169-206   LDL receptor-like module  
ENSTGUP00000002220   0.000000275   65-96   LDL receptor-like module  
ENSTGUP00000002273   0.0000336   75-116   LDL receptor-like module  
ENSTGUP00000002291   0.00000000223   141-173   LDL receptor-like module  
ENSTGUP00000002531   0.00000000982   423-464   LDL receptor-like module  
  0.000000275   201-237   LDL receptor-like module  
  0.0393   6-25   LDL receptor-like module  
ENSTGUP00000004299   0.0000000012   224-269   LDL receptor-like module  
  0.0000000393   185-222   LDL receptor-like module  
ENSTGUP00000005056   0.000000000367   77-117   LDL receptor-like module  
  0.0000000144   199-239   LDL receptor-like module  
  0.0000000445   42-79   LDL receptor-like module  
  0.000000157   242-277   LDL receptor-like module  
  0.000000209   118-153   LDL receptor-like module  
  0.000209   7-36   LDL receptor-like module  
ENSTGUP00000005567   0.00000000393   92-134   LDL receptor-like module  
ENSTGUP00000005606   0.00000000000406   208-247   LDL receptor-like module  
  0.0000000000115   5-41   LDL receptor-like module  
  0.0000000000367   121-161   LDL receptor-like module  
  0.0000000000484   245-285   LDL receptor-like module  
  0.000000000183   161-198   LDL receptor-like module  
  0.000000000916   43-82   LDL receptor-like module  
  0.0000000223   80-122   LDL receptor-like module  
  0.0000000327   290-327   LDL receptor-like module  
ENSTGUP00000005768   0.0000000223   75-113   LDL receptor-like module  
ENSTGUP00000005777   0.000000524   21-58   LDL receptor-like module  
ENSTGUP00000008033   0.00000000000353   2701-2743   LDL receptor-like module  
  0.0000000000576   1232-1273   LDL receptor-like module  
  0.0000000000615   3594-3634   LDL receptor-like module  
  0.000000000157   2824-2863   LDL receptor-like module  
  0.000000000209   992-1030   LDL receptor-like module  
  0.000000000209   2952-2995   LDL receptor-like module  
  0.000000000406   1-36   LDL receptor-like module  
  0.000000000445   75-116   LDL receptor-like module  
  0.000000000511   2993-3035   LDL receptor-like module  
  0.000000000563   3892-3929   LDL receptor-like module  
  0.000000000576   190-229   LDL receptor-like module  
  0.000000000694   2869-2906   LDL receptor-like module  
  0.0000000011   155-192   LDL receptor-like module  
  0.00000000144   3477-3513   LDL receptor-like module  
  0.00000000157   1078-1112   LDL receptor-like module  
  0.00000000209   2665-2703   LDL receptor-like module  
  0.00000000262   3553-3595   LDL receptor-like module  
  0.00000000301   3685-3722   LDL receptor-like module  
  0.0000000038   1193-1231   LDL receptor-like module  
  0.00000000406   3040-3077   LDL receptor-like module  
  0.0000000055   1115-1153   LDL receptor-like module  
  0.00000000812   3515-3556   LDL receptor-like module  
  0.00000000812   3763-3800   LDL receptor-like module  
  0.0000000131   3807-3843   LDL receptor-like module  
  0.0000000144   38-74   LDL receptor-like module  
  0.000000017   2780-2826   LDL receptor-like module  
  0.0000000772   3720-3760   LDL receptor-like module  
  0.000000089   2910-2954   LDL receptor-like module  
  0.000000249   117-153   LDL receptor-like module  
  0.000000602   3643-3683   LDL receptor-like module  
  0.000000654   3850-3887   LDL receptor-like module  
  0.00000102   1277-1313   LDL receptor-like module  
  0.00000131   2749-2785   LDL receptor-like module  
  0.0000038   1153-1190   LDL receptor-like module  
  0.00707   1038-1071   LDL receptor-like module  
ENSTGUP00000008476   0.00000000157   632-671   LDL receptor-like module  
  0.00000000511   364-396   LDL receptor-like module  
  0.00000000641   557-594   LDL receptor-like module  
  0.00000000733   250-287   LDL receptor-like module  
  0.0000000103   327-361   LDL receptor-like module  
  0.0000000511   285-323   LDL receptor-like module  
  0.00000144   598-630   LDL receptor-like module  
ENSTGUP00000009074   0.0000000262   284-320   LDL receptor-like module  
ENSTGUP00000009184   0.0000000000101   25-67   LDL receptor-like module  
ENSTGUP00000009480   0.0000000236   284-320   LDL receptor-like module  
ENSTGUP00000009572   0.0000000000196   208-246   LDL receptor-like module  
  0.0000000000288   125-161   LDL receptor-like module  
  0.0000000000497   244-285   LDL receptor-like module  
  0.0000000000785   160-197   LDL receptor-like module  
  0.000000000249   4-41   LDL receptor-like module  
  0.000000000288   44-87   LDL receptor-like module  
  0.00000000681   79-122   LDL receptor-like module  
ENSTGUP00000009645   0.000000089   35-71   LDL receptor-like module  
  0.0000144   84-113   LDL receptor-like module  
  0.0017   121-161   LDL receptor-like module  
ENSTGUP00000009711   0.00000000000511   138-176   LDL receptor-like module  
  0.00000000000929   418-456   LDL receptor-like module  
  0.00000000746   183-224   LDL receptor-like module  
  0.000000759   379-417   LDL receptor-like module  
  0.00000471   341-378   LDL receptor-like module  
ENSTGUP00000009775   0.000000126   4-40   LDL receptor-like module  
ENSTGUP00000009905   0.000000209   73-105   LDL receptor-like module  
ENSTGUP00000009932   0.000000367   75-110   LDL receptor-like module  
ENSTGUP00000010277   0.000000000288   1260-1295   LDL receptor-like module  
  0.00000000157   1222-1258   LDL receptor-like module  
  0.00000000301   1181-1221   LDL receptor-like module  
ENSTGUP00000010431   0.0000000000563   15-51   LDL receptor-like module  
  0.000000000288   96-133   LDL receptor-like module  
  0.000000000615   56-93   LDL receptor-like module  
ENSTGUP00000010903   0.0000000000236   247-287   LDL receptor-like module  
  0.0000000000497   292-328   LDL receptor-like module  
  0.0000000000864   211-249   LDL receptor-like module  
  0.000000000196   126-166   LDL receptor-like module  
  0.000000000367   49-88   LDL receptor-like module  
  0.00000000327   170-208   LDL receptor-like module  
  0.00000000497   87-125   LDL receptor-like module  
  0.0000017   9-51   LDL receptor-like module  
ENSTGUP00000011000   0.00000183   438-472   LDL receptor-like module  
  0.0000288   404-436   LDL receptor-like module  
ENSTGUP00000011100   0.0000000327   277-313   LDL receptor-like module  
ENSTGUP00000011676   0.000000000929   106-142   LDL receptor-like module  
ENSTGUP00000012223   0.0000000000367   895-934   LDL receptor-like module  
  0.000000000223   854-896   LDL receptor-like module  
  0.000000000223   980-1016   LDL receptor-like module  
  0.000000000236   816-856   LDL receptor-like module  
  0.000000000314   3607-3643   LDL receptor-like module  
  0.000000000393   3327-3367   LDL receptor-like module  
  0.000000000471   3733-3772   LDL receptor-like module  
  0.000000000511   3451-3487   LDL receptor-like module  
  0.000000000563   2866-2907   LDL receptor-like module  
  0.000000000589   3568-3605   LDL receptor-like module  
  0.00000000101   2735-2771   LDL receptor-like module  
  0.00000000131   3649-3693   LDL receptor-like module  
  0.00000000157   2655-2692   LDL receptor-like module  
  0.00000000249   3411-3447   LDL receptor-like module  
  0.00000000262   1028-1064   LDL receptor-like module  
  0.00000000275   2778-2812   LDL receptor-like module  
  0.00000000432   3291-3325   LDL receptor-like module  
  0.00000000746   3529-3564   LDL receptor-like module  
  0.0000000124   2521-2562   LDL receptor-like module  
  0.0000000131   2695-2738   LDL receptor-like module  
  0.0000000131   3370-3407   LDL receptor-like module  
  0.000000017   2815-2855   LDL receptor-like module  
  0.0000000249   3485-3525   LDL receptor-like module  
  0.0000000458   2566-2606   LDL receptor-like module  
  0.0000000497   939-979   LDL receptor-like module  
  0.000000209   1071-1108   LDL receptor-like module  
  0.000000275   2485-2523   LDL receptor-like module  
  0.000000497   1110-1146   LDL receptor-like module  
  0.000000812   2615-2651   LDL receptor-like module  
  0.0000209   3695-3727   LDL receptor-like module  
ENSTGUP00000012551   0.000000000017   449-487   LDL receptor-like module  
  0.00000000393   164-200   LDL receptor-like module  
  0.000000117   410-448   LDL receptor-like module  
  0.000000288   211-253   LDL receptor-like module  
  0.000000942   373-410   LDL receptor-like module  
ENSTGUP00000013094   0.00000000196   1233-1271   LDL receptor-like module  
  0.00000000283   1311-1349   LDL receptor-like module  
  0.00000000353   1273-1309   LDL receptor-like module  
ENSTGUP00000013952   0.000000000017   640-681   LDL receptor-like module  
  0.00000017   183-219   LDL receptor-like module  
ENSTGUP00000013996   0.0000000000103   453-499   LDL receptor-like module  
  0.0000000144   528-570   LDL receptor-like module  
  0.0000563   487-524   LDL receptor-like module  
ENSTGUP00000015302   0.00000000183   1-37   LDL receptor-like module  
ENSTGUP00000016128   0.0000000406   127-164   LDL receptor-like module  
ENSTGUP00000016176   0.0000000000615   779-819   LDL receptor-like module  
  0.000000000123   945-983   LDL receptor-like module  
  0.000000000131   3438-3474   LDL receptor-like module  
  0.000000000196   3480-3525   LDL receptor-like module  
  0.000000000288   820-862   LDL receptor-like module  
  0.000000000353   861-899   LDL receptor-like module  
  0.000000000445   905-942   LDL receptor-like module  
  0.000000000563   3209-3249   LDL receptor-like module  
  0.000000000576   2620-2656   LDL receptor-like module  
  0.000000000798   988-1028   LDL receptor-like module  
  0.000000000877   2663-2698   LDL receptor-like module  
  0.00000000183   2830-2871   LDL receptor-like module  
  0.00000000497   2702-2737   LDL receptor-like module  
  0.00000000537   2485-2526   LDL receptor-like module  
  0.000000012   3252-3289   LDL receptor-like module  
  0.000000017   3172-3207   LDL receptor-like module  
  0.000000127   1074-1109   LDL receptor-like module  
  0.000000196   2582-2614   LDL receptor-like module  
  0.000000196   2449-2487   LDL receptor-like module  
  0.000000249   2780-2819   LDL receptor-like module  
  0.000000367   7-42   LDL receptor-like module  
  0.000000654   1037-1071   LDL receptor-like module  
  0.00000602   3410-3436   LDL receptor-like module  
  0.0000353   3522-3558   LDL receptor-like module  
  0.0000563   2756-2777   LDL receptor-like module  
  0.00851   2525-2553   LDL receptor-like module  

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Select to display   Genome       Domains   Proteins
No Yes ALL   327216 327216
No Yes Homo sapiens 76_38 Human 548 151
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 216 47
No Yes Gorilla gorilla 76_3.1 Western gorilla 276 65
No Yes Pongo abelii 76_2 Sumatran orangutan 204 46
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 205 51
No Yes Papio anubis 76 Olive baboon 223 47
No Yes Macaca mulatta 76_1 Rhesus monkey 283 70
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 461 115
No Yes Otolemur garnettii 76_3 Small-eared galago 203 44
No Yes Microcebus murinus 76_1 Gray mouse lemur 178 42
No Yes Rattus norvegicus 76_5.0 Norway rat 208 49
No Yes Mus musculus 76_38 House mouse 402 97
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 182 41
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 224 46
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 238 49
No Yes Cavia porcellus 76_3 Domestic guinea pig 223 51
No Yes Oryctolagus cuniculus 76_2 Rabbit 225 50
No Yes Ochotona princeps 76 American pika 188 39
No Yes Tupaia belangeri 76 Northern tree shrew 156 37
No Yes Sus scrofa 76_10.2 Pig 167 58
No Yes Bos taurus 76_3.1 Cattle 211 52
No Yes Ovis aries 76_3.1 Sheep 271 58
No Yes Vicugna pacos 76_1 Alpaca 117 23
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 196 45
No Yes Mustela putorius furo 76_1.0 Domestic ferret 233 47
No Yes Ailuropoda melanoleuca 76_1 Giant panda 261 52
No Yes Canis familiaris 76_3.1 Dog 374 66
No Yes Felis catus 76_6.2 Domestic cat 246 53
No Yes Equus caballus 76_2 Horse 321 60
No Yes Myotis lucifugus 76_2.0 Little brown bat 187 45
No Yes Pteropus vampyrus 76_1 Large flying fox 203 43
No Yes Sorex araneus 76_1 European shrew 106 25
No Yes Erinaceus europaeus 76 Western European hedgehog 139 33
No Yes Procavia capensis 76_1 Cape rock hyrax 174 36
No Yes Loxodonta africana 76_3 African savanna elephant 236 56
No Yes Echinops telfairi 76 Small Madagascar hedgehog 144 32
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 268 57
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 117 25
No Yes Macropus eugenii 76_1.0 Tammar wallaby 183 39
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 228 61
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 214 49
No Yes Ornithorhynchus anatinus 76_5 Platypus 206 53
No Yes Saccoglossus kowalevskii v3.0   1261 297
No Yes Petromyzon marinus 76_7.0 Sea lamprey 203 25
No Yes Meleagris gallopavo 76_2 Turkey 201 50
No Yes Gallus gallus 76_4 Chicken 222 45
No Yes Anas platyrhynchos 76_1.0 Mallard 185 45
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 193 44
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 218 43
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 212 59
No Yes Anolis carolinensis 76_2.0 Green anole 230 49
No Yes Xenopus laevis African clawed frog 176 45
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 231 62
No Yes Latimeria chalumnae 76_1 Coelacanth 249 52
No Yes Lepisosteus oculatus 76 Spotted gar 373 70
No Yes Gadus morhua 76_1 Atlantic cod 251 50
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 445 69
No Yes Takifugu rubripes 76_4 Torafugu 1153 201
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 365 68
No Yes Oryzias latipes 76_1 Japanese medaka 304 56
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 308 56
No Yes Poecilia formosa 76 Amazon molly 313 57
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 440 81
No Yes Astyanax mexicanus 76 Mexican tetra 293 73
No Yes Danio rerio 76_9 Zebrafish 537 103
No Yes Oikopleura dioica   54 30
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 454 80
No Yes Ciona intestinalis 76 Vase tunicate 156 67
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 601 193
No Yes Adineta vaga   274 125
No Yes Octopus bimaculoides 280   398 81
No Yes Crassostrea gigas 22 Pacific oyster 237 86
No Yes Lottia gigantea Owl limpet 212 60
No Yes Helobdella robusta   208 57
No Yes Capitella sp. I   359 115
No Yes Danaus plexippus OGS1.0 Monarch butterfly 163 38
No Yes Heliconius melpomene Postman butterfly 145 29
No Yes Bombyx mori Domestic silkworm 97 41
No Yes Nasonia vitripennis Jewel wasp 89 27
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 323 64
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 128 38
No Yes Linepithema humile v1.1 Argentine ant 122 43
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 116 43
No Yes Solenopsis invicta v.2.2.3 Red fire ant 98 38
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 126 36
No Yes Atta cephalotes v1.1   125 40
No Yes Camponotus floridanus v3.3 Florida carpenter ant 131 35
No Yes Lucilia cuprina Australian sheep blowfly 189 33
No Yes Drosophila grimshawi 1.3   174 37
No Yes Drosophila willistoni 1.3   172 39
No Yes Drosophila pseudoobscura 2.13   181 42
No Yes Drosophila persimilis 1.3   170 43
No Yes Drosophila suzukii   171 33
No Yes Drosophila yakuba 1.3   172 38
No Yes Drosophila simulans 1.3   99 33
No Yes Drosophila sechellia 1.3   155 40
No Yes Drosophila melanogaster 76_5 Fruit fly 643 97
No Yes Drosophila erecta 1.3   173 37
No Yes Drosophila ananassae 1.3   157 32
No Yes Drosophila virilis 1.2   158 36
No Yes Drosophila mojavensis 1.3   171 37
No Yes Megaselia scalaris 22   44 19
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 166 35
No Yes Culex pipiens quinquefasciatus Southern house mosquito 107 38
No Yes Anopheles darlingi 22 American malaria mosquito 118 28
No Yes Anopheles gambiae 49_3j African malaria mosquito 161 32
No Yes Tribolium castaneum 3.0 Red flour beetle 179 43
No Yes Pediculus humanus corporis (Early assembly) Human body louse 171 34
No Yes Acyrthosiphon pisum Pea aphid 150 36
No Yes Rhodnius prolixus 22   125 30
No Yes Daphnia pulex Common water flea 221 61
No Yes Strigamia maritima 22   202 47
No Yes Sarcoptes scabiei   128 42
No Yes Tetranychus urticae Two-spotted spider mite 193 71
No Yes Ixodes scapularis (Preliminary) Black-legged tick 139 44
No Yes Pristionchus pacificus   91 28
No Yes Meloidogyne incognita Southern root-knot nematode 95 18
No Yes Meloidogyne hapla   27 13
No Yes Onchocerca volvulus 22   73 17
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 129 27
No Yes Caenorhabditis japonica   103 24
No Yes Caenorhabditis brenneri   168 39
No Yes Caenorhabditis remanei   123 29
No Yes Caenorhabditis elegans 76_235 Roundworm 177 44
No Yes Caenorhabditis briggsae 2   118 26
No Yes Trichinella spiralis 22   119 32
No Yes Hymenolepis microstoma   45 11
No Yes Echinococcus multilocularis   39 13
No Yes Echinococcus granulosus   38 12
No Yes Taenia solium Pork tapeworm 35 17
No Yes Schistosoma mansoni   18 9
No Yes Mnemiopsis leidyi Sea walnut 413 204
No Yes Thelohanellus kitauei   270 126
No Yes Acropora digitifera v1.0   105 35
No Yes Nematostella vectensis 1.0 Starlet sea anemone 144 35
No Yes Hydra vulgaris   77 17
No Yes Amphimedon queenslandica   13 3
No Yes Trichoplax adhaerens   103 18
No Yes Proterospongia sp. ATCC 50818   2 2
No Yes Monosiga brevicollis   17 17
No Yes Sphaeroforma arctica JP610   1 1
No Yes Capsaspora owczarzaki ATCC 30864   2 2
No Yes Rhizopus oryzae RA 99-880   1 1
No Yes Rhizomucor miehei CAU432   1 1
No Yes Sphaerobolus stellatus v1.0   1 1
No Yes Tulasnella calospora AL13/4D v1.0   1 1
No Yes Botrytis cinerea B05.10   1 1
No Yes Sclerotinia sclerotiorum   1 1
No Yes Zasmidium cellare ATCC 36951 v1.0   1 1
No Yes Paracoccidioides brasiliensis Pb18   1 1
No Yes Histoplasma capsulatum class NAmI strain WU24   1 1
No Yes Penicillium chrysogenum Wisconsin 54-1255   1 1
No Yes Penicillium chrysogenum v1.0   1 1
No Yes Aspergillus acidus v1.0   1 1
No Yes Aspergillus brasiliensis v1.0   1 1
No Yes Aspergillus terreus NIH2624   1 1
No Yes Aspergillus tubingensis v1.0   1 1
No Yes Aspergillus niger 22   1 1
No Yes Aspergillus niger ATCC 1015   1 1
No Yes Tuber melanosporum Mel28 22   1 1
No Yes Tuber melanosporum Vittad Perigord truffle 1 1
No Yes Saccharomyces paradoxus MIT   1 1
No Yes Schizosaccharomyces japonicus yFS275   1 1
No Yes Catenaria anguillulae PL171 v1.0   1 1
No Yes Allomyces macrogynus ATCC 38327   1 1
No Yes Dictyostelium purpureum   1 1
No Yes Gossypium raimondii v221   2 2
No Yes Citrus clementina v165   2 2
No Yes Citrus sinensis v154 Sweet orange 2 2
No Yes Manihot esculenta v147 Cassava 1 1
No Yes Populus trichocarpa v156 Black cottonwood 1 1
No Yes Solanum lycopersicum v.2.3 Tomato 1 1
No Yes Solanum tuberosum Potato 3 3
No Yes Triticum aestivum 22 Bread wheat 5 5
No Yes Brachypodium distachyon Stiff brome 3 3
No Yes Panicum virgatum v202 Switchgrass 1 1
No Yes Musa balbisiana Balbis banana 1 1
No Yes Musa acuminata 22 Wild Malaysian banana 2 2
No Yes Coccomyxa subellipsoidea sp. C-169 v2   1 1
No Yes Volvox carteri f. nagariensis   1 1
No Yes Volvox carteri v199   1 1
No Yes Chlamydomonas reinhardtii 4.0   1 1
No Yes Thecamonas trahens ATCC 50062   1 1
No Yes Bigelowiella natans CCMP2755 22   2 2
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   1 1
No Yes Trypanosoma vivax   1 1
No Yes Trypanosoma congolense 2.4   1 1
No Yes Trypanosoma brucei gambiense v4.1   1 1
No Yes Trypanosoma brucei TREU927 v4.1   1 1
No Yes Pythium iwayamai DAOM BR242034 22   1 1
No Yes Pythium vexans DAOM BR484 22   1 1
No Yes Phytophthora sojae 1.1   1 1
No Yes Perkinsus marinus ATCC 50983   2 2
No Yes Naegleria gruberi   1 1
No Yes Trichomonas vaginalis   8 6
No Yes Emiliania huxleyi CCMP1516   1 1
No Yes Haliangium ochraceum DSM 14365   4 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 272 61
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 446 71
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 209 34
No Yes Ascaris suum Victoria/Ghent Pig roundworm 106 28
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 150 35
No Yes Cryptococcus neoformans var. grubii H99   1 1
No Yes Cryptococcus neoformans B-3501A   1 1
No Yes Cryptococcus neoformans JEC21   1 1
No Yes Paracoccidioides brasiliensis Pb03   1 1
No Yes Histoplasma capsulatum H88   1 1
No Yes Histoplasma capsulatum G186AR   1 1
No Yes Batrachochytrium dendrobatidis JAM81   1 1
No Yes Trypanosoma brucei Lister 427 v4.1   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 505 148
No Yes Homo sapiens (NCBI version) Human 303 75
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 220 45
No Yes Heliconius numata (Incomplete)   12 9
No Yes Loa loa v3.3 (Request) Eye worm 74 20
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 63 26
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 55 14
No Yes Moniliophthora perniciosa FA553 (Genome survey)   1 1
No Yes Picea sitchensis (Incomplete) Sitka spruce 1 1
No Yes Ricinus communis (Early assembly) Castor bean 1 1
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   3 3
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 1 1
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 1 1
No Yes Homo sapiens 69_37 Human 219 45
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 212 44
No Yes Gorilla gorilla 69_3.1 Western gorilla 191 46
No Yes Pongo abelii 69_2 Sumatran orangutan 201 44
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 188 47
No Yes Macaca mulatta 69_1 Rhesus monkey 192 45
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 216 49
No Yes Otolemur garnettii 69_3 Small-eared galago 202 43
No Yes Microcebus murinus 69_1 Gray mouse lemur 178 42
No Yes Rattus norvegicus 69_3.4 Norway rat 203 51
No Yes Mus musculus 69_38 House mouse 222 47
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 182 41
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 193 41
No Yes Cavia porcellus 69_3 Domestic guinea pig 199 49
No Yes Oryctolagus cuniculus 69_2 Rabbit 202 46
No Yes Ochotona princeps 69 American pika 188 39
No Yes Tupaia belangeri 69 Northern tree shrew 156 37
No Yes Sus scrofa 69_10.2 Pig 143 48
No Yes Bos taurus 69_3.1 Cattle 205 47
No Yes Vicugna pacos 69_1 Alpaca 117 23
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 196 45
No Yes Mustela putorius furo 69_1.0 Domestic ferret 230 46
No Yes Ailuropoda melanoleuca 69_1 Giant panda 224 48
No Yes Canis familiaris 69_3.1 Dog 243 49
No Yes Felis catus 69 Domestic cat 141 37
No Yes Equus caballus 69_2 Horse 223 52
No Yes Myotis lucifugus 69_2.0 Little brown bat 183 43
No Yes Pteropus vampyrus 69_1 Large flying fox 203 43
No Yes Sorex araneus 69_1 European shrew 106 25
No Yes Erinaceus europaeus 69 Western European hedgehog 139 33
No Yes Procavia capensis 69_1 Cape rock hyrax 174 36
No Yes Loxodonta africana 69_3 African savanna elephant 187 43
No Yes Echinops telfairi 69 Small Madagascar hedgehog 144 32
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 144 28
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 117 25
No Yes Macropus eugenii 69_1.0 Tammar wallaby 183 39
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 181 44
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 212 48
No Yes Ornithorhynchus anatinus 69_5 Platypus 175 47
No Yes Petromyzon marinus 69_7.0 Sea lamprey 168 21
No Yes Meleagris gallopavo 69_2 Turkey 169 44
No Yes Gallus gallus 69_2 Chicken 171 37
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 187 40
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 175 46
No Yes Anolis carolinensis 69_2.0 Green anole 223 47
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 220 53
No Yes Latimeria chalumnae 69_1 Coelacanth 192 43
No Yes Gadus morhua 69_1 Atlantic cod 237 47
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 307 53
No Yes Takifugu rubripes 69_4 Torafugu 272 48
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 314 55
No Yes Oryzias latipes 69_1 Japanese medaka 275 44
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 308 56
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 337 58
No Yes Danio rerio 69_9 Zebrafish 342 61
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 155 51
No Yes Ciona intestinalis 69 Vase tunicate 143 62
No Yes Drosophila melanogaster 69_5 Fruit fly 168 35
No Yes Caenorhabditis elegans 69_215 Roundworm 126 26
No Yes 1_Upper_euphotic (meta-genome)   3 2
No Yes 3_Below_base_of_euphotic (meta-genome)   1 1
No Yes 5_Below_upper_mesopelagic (meta-genome)   1 1
No Yes 6_Upper_euphotic (meta-genome)   2 1
No Yes 7_Oxygen_minimum_layer (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   1 1
No Yes NCBI 2017_08 genome   143684 28917
No Yes Protozoadb 2010_08 (Protozoadb)   18 14
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   8 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   2 2
No Yes STRING v9.0.5 (STRING)   10524 2529
No Yes Uniprot 2018_03 genome   103788 23713
No Yes Global Ocean Sampling Expedition (GOS)   193 113
No Yes PDB chains (SCOP 1.75) (PDB)   26 18
No Yes Protein Data Bank (all PDB sequenc)   207 160
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   244 244
No Yes TargetDB (Targets)   96 34

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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