SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.


DEATH domain superfamily domain assignments
in
Takifugu rubripes 76_4

Assignment details

(show help)


Takifugu rubripes 76_4 has 249 significant domains in 222 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSTRUP00000003043   2.36e-18   321-408   DEATH domain, DD  
ENSTRUP00000003044   2.36e-18   321-408   DEATH domain, DD  
ENSTRUP00000003045   2.44e-18   331-418   DEATH domain, DD  
ENSTRUP00000003047   2.09e-18   294-381   DEATH domain, DD  
ENSTRUP00000003048   1.97e-18   283-370   DEATH domain, DD  
ENSTRUP00000003049   2.15e-18   301-388   DEATH domain, DD  
ENSTRUP00000003050   2.36e-18   322-409   DEATH domain, DD  
ENSTRUP00000003735   0.0000000000000812   89-165   DEATH effector domain, DED  
ENSTRUP00000003736   0.0000000000000577   25-101   DEATH effector domain, DED  
ENSTRUP00000003737   0.0000000000000589   24-100   DEATH effector domain, DED  
ENSTRUP00000004659   2.12e-19   10-107   Caspase recruitment domain, CARD  
ENSTRUP00000004660   2.12e-19   10-107   Caspase recruitment domain, CARD  
ENSTRUP00000004661   1.74e-19   10-107   Caspase recruitment domain, CARD  
ENSTRUP00000004662   2.17e-19   36-133   Caspase recruitment domain, CARD  
ENSTRUP00000004663   1.74e-19   10-107   Caspase recruitment domain, CARD  
ENSTRUP00000004664   1.79e-19   10-107   Caspase recruitment domain, CARD  
ENSTRUP00000004999   3.96e-22   1-91   Caspase recruitment domain, CARD  
  0.0000000000000837   112-195   DEATH domain, DD  
ENSTRUP00000005000   1.91e-22   1-91   Caspase recruitment domain, CARD  
  0.0000000000000785   109-192   DEATH domain, DD  
ENSTRUP00000005109   0.0000147   39-95   Caspase recruitment domain, CARD  
ENSTRUP00000005335   1.31e-21   1153-1235   DEATH domain, DD  
ENSTRUP00000007056   0.00000000000268   17-109   Caspase recruitment domain, CARD  
ENSTRUP00000007057   0.00000000000306   12-104   Caspase recruitment domain, CARD  
ENSTRUP00000007058   0.00000000000306   12-104   Caspase recruitment domain, CARD  
ENSTRUP00000007059   0.00000000000325   2-93   Caspase recruitment domain, CARD  
ENSTRUP00000007060   0.00000000000264   17-109   Caspase recruitment domain, CARD  
ENSTRUP00000007265   8.75e-18   841-918   DEATH domain, DD  
ENSTRUP00000007267   8.41e-18   806-883   DEATH domain, DD  
ENSTRUP00000007268   9.42e-18   887-964   DEATH domain, DD  
ENSTRUP00000007269   3.26e-17   815-890   DEATH domain, DD  
ENSTRUP00000007270   1.24e-17   813-889   DEATH domain, DD  
ENSTRUP00000008119   1.82e-21   805-889   DEATH domain, DD  
ENSTRUP00000008120   1.88e-21   826-910   DEATH domain, DD  
ENSTRUP00000008121   1.88e-21   843-927   DEATH domain, DD  
ENSTRUP00000008122   1.77e-21   798-882   DEATH domain, DD  
ENSTRUP00000008123   1.77e-21   785-869   DEATH domain, DD  
ENSTRUP00000008124   1.77e-21   785-869   DEATH domain, DD  
ENSTRUP00000008125   1.77e-21   785-869   DEATH domain, DD  
ENSTRUP00000008126   1.71e-21   778-862   DEATH domain, DD  
ENSTRUP00000008127   1.77e-21   793-877   DEATH domain, DD  
ENSTRUP00000008128   1.29e-19   784-860   DEATH domain, DD  
ENSTRUP00000009404   1.04e-17   460-543   Caspase recruitment domain, CARD  
ENSTRUP00000009405   9.89e-18   471-554   Caspase recruitment domain, CARD  
ENSTRUP00000009406   8.95e-18   437-520   Caspase recruitment domain, CARD  
ENSTRUP00000009407   8.95e-18   431-514   Caspase recruitment domain, CARD  
ENSTRUP00000009408   9.42e-18   436-519   Caspase recruitment domain, CARD  
ENSTRUP00000009409   8.95e-18   303-385   Caspase recruitment domain, CARD  
ENSTRUP00000010052   0.00000000000000112   5-101   DEATH domain, DD  
ENSTRUP00000010053   2.41e-17   5-114   DEATH domain, DD  
ENSTRUP00000010054   1.59e-16   10-118   DEATH domain, DD  
ENSTRUP00000010128   0.00000000000000774   308-400   DEATH domain, DD  
ENSTRUP00000010129   0.0000000000000101   321-413   DEATH domain, DD  
ENSTRUP00000010130   0.00000000000000841   259-351   DEATH domain, DD  
ENSTRUP00000010131   0.00000000000000976   308-400   DEATH domain, DD  
ENSTRUP00000010132   0.0000000000000074   304-397   DEATH domain, DD  
ENSTRUP00000010369   0.00000000647   786-863   DEATH domain, DD  
ENSTRUP00000010370   0.00000000188   746-825   DEATH domain, DD  
ENSTRUP00000010371   0.00000000184   725-804   DEATH domain, DD  
ENSTRUP00000010515   0.00000000000000141   1-94   Caspase recruitment domain, CARD  
ENSTRUP00000010516   0.00000000000000141   1-94   Caspase recruitment domain, CARD  
ENSTRUP00000010914   0.000000414   392-477   DEATH domain, DD  
ENSTRUP00000010915   0.000000353   364-449   DEATH domain, DD  
ENSTRUP00000011080   1.04e-20   280-381   DEATH domain, DD  
ENSTRUP00000011549   1.53e-23   807-886   DEATH domain, DD  
ENSTRUP00000011550   1.41e-23   837-916   DEATH domain, DD  
ENSTRUP00000012848   7.53e-34   22-146   DEATH effector domain, DED  
ENSTRUP00000013027   5.36e-17   6-89   Caspase recruitment domain, CARD  
ENSTRUP00000013811   0.00000000000000432   314-410   DEATH domain, DD  
ENSTRUP00000013812   0.00000000000000432   315-411   DEATH domain, DD  
ENSTRUP00000013813   0.00000000000000903   190-281   DEATH domain, DD  
ENSTRUP00000013814   0.0000000000000118   249-340   DEATH domain, DD  
ENSTRUP00000014263   6.28e-17   809-885   DEATH domain, DD  
ENSTRUP00000014264   6.28e-17   802-878   DEATH domain, DD  
ENSTRUP00000014265   6.28e-17   813-889   DEATH domain, DD  
ENSTRUP00000014266   5.89e-17   804-880   DEATH domain, DD  
ENSTRUP00000014267   5.89e-17   805-881   DEATH domain, DD  
ENSTRUP00000014268   5.89e-17   793-869   DEATH domain, DD  
ENSTRUP00000014269   5.89e-17   807-883   DEATH domain, DD  
ENSTRUP00000014270   5.89e-17   798-874   DEATH domain, DD  
ENSTRUP00000016336   8.48e-17   14-118   DEATH domain, DD  
ENSTRUP00000016337   7.53e-17   14-119   DEATH domain, DD  
ENSTRUP00000016338   3.58e-17   14-109   DEATH domain, DD  
ENSTRUP00000017044   6.06e-16   718-817   DEATH domain, DD  
ENSTRUP00000017122   0.000000000000659   109-190   Caspase recruitment domain, CARD  
  0.00000000000135   4-85   Pyrin domain, PYD  
ENSTRUP00000017123   0.000000000000367   105-189   Caspase recruitment domain, CARD  
  0.00000000000225   4-85   Pyrin domain, PYD  
ENSTRUP00000017273   1.27e-24   1399-1507   DEATH domain, DD  
ENSTRUP00000017274   7.36e-25   1397-1506   DEATH domain, DD  
ENSTRUP00000017275   5.89e-25   1395-1504   DEATH domain, DD  
ENSTRUP00000017276   2.94e-24   3846-3953   DEATH domain, DD  
ENSTRUP00000017277   2.41e-24   2319-2424   DEATH domain, DD  
ENSTRUP00000017278   7.07e-25   1432-1540   DEATH domain, DD  
ENSTRUP00000017279   2.71e-22   1461-1548   DEATH domain, DD  
ENSTRUP00000017761   0.000000000000018   265-360   DEATH domain, DD  
ENSTRUP00000017762   4.42e-16   356-449   DEATH domain, DD  
ENSTRUP00000017763   0.0000000000000618   286-377   DEATH domain, DD  
ENSTRUP00000019846   0.000000000000965   24-104   DEATH effector domain, DED  
ENSTRUP00000019847   0.000000000000942   24-104   DEATH effector domain, DED  
ENSTRUP00000019848   0.000000000000895   24-104   DEATH effector domain, DED  
ENSTRUP00000019849   0.00000000000093   24-104   DEATH effector domain, DED  
ENSTRUP00000019850   0.00000177   110-153   DEATH effector domain, DED  
ENSTRUP00000019851   0.000000000000848   13-93   DEATH effector domain, DED  
ENSTRUP00000019853   7.65e-17   5-88   Caspase recruitment domain, CARD  
ENSTRUP00000020192   5.38e-25   1409-1502   DEATH domain, DD  
ENSTRUP00000020193   7.74e-25   1483-1574   DEATH domain, DD  
ENSTRUP00000020194   5.72e-25   1411-1503   DEATH domain, DD  
ENSTRUP00000020195   2.39e-23   1433-1517   DEATH domain, DD  
ENSTRUP00000020196   2.46e-23   1458-1542   DEATH domain, DD  
ENSTRUP00000020711   7.07e-29   614-725   DEATH domain, DD  
ENSTRUP00000020712   1.47e-28   1477-1588   DEATH domain, DD  
ENSTRUP00000020713   2.94e-28   2959-3070   DEATH domain, DD  
ENSTRUP00000020714   7.36e-27   1427-1523   DEATH domain, DD  
ENSTRUP00000020715   6.48e-27   1424-1520   DEATH domain, DD  
ENSTRUP00000021177   0.0000000000264   15-84   Caspase recruitment domain, CARD  
  0.0000000000518   114-189   Caspase recruitment domain, CARD  
ENSTRUP00000021178   0.0000000000108   114-193   Caspase recruitment domain, CARD  
  0.0000000000264   15-84   Caspase recruitment domain, CARD  
ENSTRUP00000021179   0.0000000000151   114-191   Caspase recruitment domain, CARD  
  0.0000000000264   15-84   Caspase recruitment domain, CARD  
ENSTRUP00000021180   0.0000000000268   33-102   Caspase recruitment domain, CARD  
  0.000000000151   132-205   Caspase recruitment domain, CARD  
ENSTRUP00000021181   0.0000000000254   15-84   Caspase recruitment domain, CARD  
  0.000000000141   114-187   Caspase recruitment domain, CARD  
ENSTRUP00000022904   2.65e-25   1420-1532   DEATH domain, DD  
ENSTRUP00000022905   3.53e-25   3829-3943   DEATH domain, DD  
ENSTRUP00000022906   1.38e-25   1434-1548   DEATH domain, DD  
ENSTRUP00000022907   2.12e-25   1451-1563   DEATH domain, DD  
ENSTRUP00000022908   2.09e-25   1431-1543   DEATH domain, DD  
ENSTRUP00000022909   1.41e-17   1004-1080   DEATH domain, DD  
ENSTRUP00000022910   1.18e-22   1403-1491   DEATH domain, DD  
ENSTRUP00000022911   2.94e-22   1444-1530   DEATH domain, DD  
ENSTRUP00000022912   5e-22   3171-3258   DEATH domain, DD  
ENSTRUP00000023772   0.0000206   224-284   DEATH domain, DD  
ENSTRUP00000024164   0.00000312   5-86   Caspase recruitment domain, CARD  
ENSTRUP00000024465   5.3e-17   97-182   DEATH effector domain, DED  
  0.00000000000000918   9-86   DEATH effector domain, DED  
ENSTRUP00000024466   2e-17   94-183   DEATH effector domain, DED  
  0.0000000000000141   6-83   DEATH effector domain, DED  
ENSTRUP00000024467   1.12e-17   92-181   DEATH effector domain, DED  
  0.0000000000000153   4-81   DEATH effector domain, DED  
ENSTRUP00000024468   1.06e-17   92-181   DEATH effector domain, DED  
  0.0000000000000153   4-81   DEATH effector domain, DED  
ENSTRUP00000024469   1.06e-17   92-183   DEATH effector domain, DED  
  0.0000000000000153   4-81   DEATH effector domain, DED  
ENSTRUP00000024470   7.65e-17   92-174   DEATH effector domain, DED  
  0.0000000000000153   4-81   DEATH effector domain, DED  
ENSTRUP00000024471   3.83e-17   92-174   DEATH effector domain, DED  
  0.0000000000000141   4-81   DEATH effector domain, DED  
ENSTRUP00000024472   2.12e-16   89-170   DEATH effector domain, DED  
  0.0000000000000165   2-78   DEATH effector domain, DED  
ENSTRUP00000024473   3.53e-16   84-177   DEATH effector domain, DED  
  0.000000000000541   1-73   DEATH effector domain, DED  
ENSTRUP00000024698   0.0000589   159-214   DEATH domain, DD  
ENSTRUP00000026299   2.64e-19   11-106   Caspase recruitment domain, CARD  
ENSTRUP00000026300   2.97e-19   2-97   Caspase recruitment domain, CARD  
ENSTRUP00000026301   2.97e-19   2-97   Caspase recruitment domain, CARD  
ENSTRUP00000027403   8.48e-23   11-108   Caspase recruitment domain, CARD  
ENSTRUP00000027665   2.27e-22   853-937   DEATH domain, DD  
ENSTRUP00000027666   2.24e-22   842-926   DEATH domain, DD  
ENSTRUP00000027667   2.18e-22   822-906   DEATH domain, DD  
ENSTRUP00000027668   2.33e-22   874-958   DEATH domain, DD  
ENSTRUP00000027669   2.18e-22   821-905   DEATH domain, DD  
ENSTRUP00000027670   2.15e-22   819-903   DEATH domain, DD  
ENSTRUP00000027671   1.88e-22   731-815   DEATH domain, DD  
ENSTRUP00000029775   1.08e-17   537-614   DEATH domain, DD  
ENSTRUP00000029776   1.65e-17   578-654   DEATH domain, DD  
ENSTRUP00000029777   1.41e-17   567-643   DEATH domain, DD  
ENSTRUP00000029778   6.39e-18   575-662   DEATH domain, DD  
ENSTRUP00000029779   1.38e-17   555-631   DEATH domain, DD  
ENSTRUP00000029780   5.05e-18   561-649   DEATH domain, DD  
ENSTRUP00000029781   5.89e-17   575-649   DEATH domain, DD  
ENSTRUP00000030216   2.12e-21   1449-1532   DEATH domain, DD  
ENSTRUP00000030217   2.52e-21   1410-1493   DEATH domain, DD  
ENSTRUP00000030218   2.52e-21   1407-1490   DEATH domain, DD  
ENSTRUP00000030219   2.73e-21   1445-1527   DEATH domain, DD  
ENSTRUP00000030220   0.0000000000000011   1007-1073   DEATH domain, DD  
ENSTRUP00000030221   9.42e-22   480-563   DEATH domain, DD  
ENSTRUP00000032169   1.04e-20   96-187   DEATH effector domain, DED  
  0.000765   10-80   DEATH effector domain, DED  
ENSTRUP00000032170   4e-21   91-183   DEATH effector domain, DED  
  0.000742   5-75   DEATH effector domain, DED  
ENSTRUP00000032171   8.95e-21   91-183   DEATH effector domain, DED  
  0.000718   5-75   DEATH effector domain, DED  
ENSTRUP00000032172   4.71e-16   91-161   DEATH effector domain, DED  
  0.000506   5-75   DEATH effector domain, DED  
ENSTRUP00000032173   8.36e-21   91-177   DEATH effector domain, DED  
  0.000506   5-75   DEATH effector domain, DED  
ENSTRUP00000032174   1.88e-21   91-199   DEATH effector domain, DED  
  0.000471   5-75   DEATH effector domain, DED  
ENSTRUP00000032175   1.77e-20   98-187   DEATH effector domain, DED  
  0.000742   14-84   DEATH effector domain, DED  
ENSTRUP00000033561   3.86e-20   2-90   Caspase recruitment domain, CARD  
ENSTRUP00000034490   1.98e-17   564-654   DEATH domain, DD  
ENSTRUP00000034491   2.69e-17   565-654   DEATH domain, DD  
ENSTRUP00000034492   3.7e-17   412-500   DEATH domain, DD  
ENSTRUP00000034511   0.0000159   34-90   Caspase recruitment domain, CARD  
ENSTRUP00000035020   7.65e-17   5-88   Caspase recruitment domain, CARD  
ENSTRUP00000035235   2.73e-17   297-380   DEATH domain, DD  
ENSTRUP00000035236   2.69e-17   296-379   DEATH domain, DD  
ENSTRUP00000035237   2.86e-17   309-392   DEATH domain, DD  
ENSTRUP00000035238   2.89e-17   310-393   DEATH domain, DD  
ENSTRUP00000035239   2.76e-17   301-384   DEATH domain, DD  
ENSTRUP00000035611   2.71e-17   1-91   Caspase recruitment domain, CARD  
ENSTRUP00000035612   2.65e-17   1-91   Caspase recruitment domain, CARD  
ENSTRUP00000035922   0.00000000000000706   12-84   Caspase recruitment domain, CARD  
ENSTRUP00000037605   9.89e-20   6-96   Caspase recruitment domain, CARD  
ENSTRUP00000037606   7.53e-20   9-100   Caspase recruitment domain, CARD  
ENSTRUP00000037607   6.59e-20   3-94   Caspase recruitment domain, CARD  
ENSTRUP00000040496   1.18e-18   1293-1408   DEATH domain, DD  
ENSTRUP00000042842   6.47e-29   1-108   DEATH domain, DD  
ENSTRUP00000042843   3.59e-29   1-106   DEATH domain, DD  
ENSTRUP00000042844   3.77e-29   1-106   DEATH domain, DD  
ENSTRUP00000042845   3.71e-29   1-106   DEATH domain, DD  
ENSTRUP00000043099   3.22e-25   2-118   DEATH domain, DD  
ENSTRUP00000043100   9.42e-25   4-116   DEATH domain, DD  
ENSTRUP00000043101   7.77e-24   1-105   DEATH domain, DD  
ENSTRUP00000043102   7.53e-24   1-105   DEATH domain, DD  
ENSTRUP00000043103   4.79e-23   3-101   DEATH domain, DD  
ENSTRUP00000043104   5.96e-25   3-113   DEATH domain, DD  
ENSTRUP00000043750   2.97e-20   469-561   Caspase recruitment domain, CARD  
ENSTRUP00000043752   3.16e-20   492-584   Caspase recruitment domain, CARD  
ENSTRUP00000043753   6.12e-21   195-282   Caspase recruitment domain, CARD  
ENSTRUP00000044388   0.00000000000145   361-448   DEATH domain, DD  
  0.0455   547-603   Caspase recruitment domain, CARD  
ENSTRUP00000044389   0.00000000000161   402-489   DEATH domain, DD  
  0.0494   585-641   Caspase recruitment domain, CARD  
ENSTRUP00000044390   0.00000000000157   382-469   DEATH domain, DD  
  0.0487   578-634   Caspase recruitment domain, CARD  
ENSTRUP00000044391   0.0000863   317-379   DEATH domain, DD  
ENSTRUP00000044662   0.0000000000000224   3-92   DEATH effector domain, DED  
  0.000000000000292   98-177   DEATH effector domain, DED  
ENSTRUP00000044663   0.0000000000000165   3-92   DEATH effector domain, DED  
  0.000000000000206   98-176   DEATH effector domain, DED  
ENSTRUP00000044664   0.00000000000000589   88-170   DEATH effector domain, DED  
  0.00000000000008   1-78   DEATH effector domain, DED  
ENSTRUP00000044665   0.00000000000000294   88-170   DEATH effector domain, DED  
  0.0000000000000789   1-78   DEATH effector domain, DED  
ENSTRUP00000044666   0.00000000000000235   88-170   DEATH effector domain, DED  
  0.0000000000000694   1-78   DEATH effector domain, DED  
ENSTRUP00000044667   0.00000000000000408   88-172   DEATH effector domain, DED  
  0.0000000000000706   1-78   DEATH effector domain, DED  
ENSTRUP00000044668   0.00000000000000883   1-95   DEATH effector domain, DED  
  0.000000000000112   103-182   DEATH effector domain, DED  
ENSTRUP00000044669   0.00000000000000789   1-96   DEATH effector domain, DED  
  0.0000000000000589   103-189   DEATH effector domain, DED  
ENSTRUP00000044670   0.00000000000000718   1-97   DEATH effector domain, DED  
  0.000000000000171   103-181   DEATH effector domain, DED  
ENSTRUP00000044800   3.24e-21   15-118   DEATH domain, DD  
ENSTRUP00000045371   1.02e-32   1-105   Caspase recruitment domain, CARD  
ENSTRUP00000045372   1.06e-32   1-105   Caspase recruitment domain, CARD  
ENSTRUP00000045373   0.0000000000146   1-56   Caspase recruitment domain, CARD  
ENSTRUP00000045374   9.03e-33   1-105   Caspase recruitment domain, CARD  
ENSTRUP00000045375   1.1e-32   1-105   Caspase recruitment domain, CARD  
ENSTRUP00000045376   1.02e-32   1-105   Caspase recruitment domain, CARD  
ENSTRUP00000045377   9.42e-33   1-105   Caspase recruitment domain, CARD  
ENSTRUP00000045378   9.08e-33   1-105   Caspase recruitment domain, CARD  
ENSTRUP00000045844   9.03e-25   303-382   DEATH domain, DD  
 
Weak hits:
ENSTRUP00000003254   0.0224   124-202   Caspase recruitment domain, CARD  
  0.0471   8-99   Caspase recruitment domain, CARD  
ENSTRUP00000003840   0.00029   24-77   DEATH domain, DD  
ENSTRUP00000005112   0.00177   64-105   DEATH domain, DD  
ENSTRUP00000024066   0.0157   7-95   Caspase recruitment domain, CARD  
ENSTRUP00000037381   0.00424   499-583   DEATH domain, DD  
ENSTRUP00000040381   0.0981   656-733   DEATH domain, DD  

Jump to [ Top of page · Assignment details · Add assignments from individual genomes ]


Add assignments from groups of genomes

View all assignments containing a DEATH domain domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]


Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   102164 102164
No Yes Homo sapiens 76_38 Human 495 454
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 95 87
No Yes Gorilla gorilla 76_3.1 Western gorilla 118 111
No Yes Pongo abelii 76_2 Sumatran orangutan 85 77
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 92 83
No Yes Papio anubis 76 Olive baboon 99 91
No Yes Macaca mulatta 76_1 Rhesus monkey 190 169
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 213 193
No Yes Otolemur garnettii 76_3 Small-eared galago 87 79
No Yes Microcebus murinus 76_1 Gray mouse lemur 66 60
No Yes Rattus norvegicus 76_5.0 Norway rat 98 93
No Yes Mus musculus 76_38 House mouse 231 216
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 66 63
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 89 79
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 65 60
No Yes Cavia porcellus 76_3 Domestic guinea pig 67 60
No Yes Oryctolagus cuniculus 76_2 Rabbit 70 65
No Yes Ochotona princeps 76 American pika 65 60
No Yes Tupaia belangeri 76 Northern tree shrew 51 49
No Yes Sus scrofa 76_10.2 Pig 101 95
No Yes Bos taurus 76_3.1 Cattle 84 78
No Yes Ovis aries 76_3.1 Sheep 88 79
No Yes Vicugna pacos 76_1 Alpaca 42 38
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 70 63
No Yes Mustela putorius furo 76_1.0 Domestic ferret 78 70
No Yes Ailuropoda melanoleuca 76_1 Giant panda 85 76
No Yes Canis familiaris 76_3.1 Dog 111 100
No Yes Felis catus 76_6.2 Domestic cat 80 73
No Yes Equus caballus 76_2 Horse 94 86
No Yes Myotis lucifugus 76_2.0 Little brown bat 89 80
No Yes Pteropus vampyrus 76_1 Large flying fox 69 65
No Yes Sorex araneus 76_1 European shrew 46 40
No Yes Erinaceus europaeus 76 Western European hedgehog 50 44
No Yes Procavia capensis 76_1 Cape rock hyrax 58 53
No Yes Loxodonta africana 76_3 African savanna elephant 101 92
No Yes Echinops telfairi 76 Small Madagascar hedgehog 50 48
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 98 91
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 37 35
No Yes Macropus eugenii 76_1.0 Tammar wallaby 60 55
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 91 84
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 81 73
No Yes Ornithorhynchus anatinus 76_5 Platypus 61 54
No Yes Saccoglossus kowalevskii v3.0   290 248
No Yes Petromyzon marinus 76_7.0 Sea lamprey 26 24
No Yes Meleagris gallopavo 76_2 Turkey 81 73
No Yes Gallus gallus 76_4 Chicken 69 63
No Yes Anas platyrhynchos 76_1.0 Mallard 63 56
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 56 51
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 62 55
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 90 80
No Yes Anolis carolinensis 76_2.0 Green anole 57 54
No Yes Xenopus laevis African clawed frog 139 117
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 77 67
No Yes Latimeria chalumnae 76_1 Coelacanth 90 79
No Yes Lepisosteus oculatus 76 Spotted gar 110 97
No Yes Gadus morhua 76_1 Atlantic cod 78 72
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 72 68
No Yes Takifugu rubripes 76_4 Torafugu 249 222
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 125 113
No Yes Oryzias latipes 76_1 Japanese medaka 65 63
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 83 76
No Yes Poecilia formosa 76 Amazon molly 92 83
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 120 110
No Yes Astyanax mexicanus 76 Mexican tetra 89 83
No Yes Danio rerio 76_9 Zebrafish 191 177
No Yes Oikopleura dioica   2 2
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 25 24
No Yes Ciona intestinalis 76 Vase tunicate 25 22
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 258 233
No Yes Adineta vaga   54 54
No Yes Octopus bimaculoides 280   213 208
No Yes Crassostrea gigas 22 Pacific oyster 113 99
No Yes Lottia gigantea Owl limpet 74 66
No Yes Helobdella robusta   38 36
No Yes Capitella sp. I   234 217
No Yes Danaus plexippus OGS1.0 Monarch butterfly 15 14
No Yes Heliconius melpomene Postman butterfly 12 12
No Yes Bombyx mori Domestic silkworm 11 11
No Yes Nasonia vitripennis Jewel wasp 9 9
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 16 16
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 14 13
No Yes Linepithema humile v1.1 Argentine ant 16 16
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 15 15
No Yes Solenopsis invicta v.2.2.3 Red fire ant 15 14
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 15 15
No Yes Atta cephalotes v1.1   14 14
No Yes Camponotus floridanus v3.3 Florida carpenter ant 15 15
No Yes Lucilia cuprina Australian sheep blowfly 9 9
No Yes Drosophila grimshawi 1.3   10 9
No Yes Drosophila willistoni 1.3   9 9
No Yes Drosophila pseudoobscura 2.13   11 10
No Yes Drosophila persimilis 1.3   10 9
No Yes Drosophila suzukii   10 10
No Yes Drosophila yakuba 1.3   11 10
No Yes Drosophila simulans 1.3   8 7
No Yes Drosophila sechellia 1.3   11 10
No Yes Drosophila melanogaster 76_5 Fruit fly 26 26
No Yes Drosophila erecta 1.3   10 10
No Yes Drosophila ananassae 1.3   11 10
No Yes Drosophila virilis 1.2   9 9
No Yes Drosophila mojavensis 1.3   9 8
No Yes Megaselia scalaris 22   6 6
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 12 12
No Yes Culex pipiens quinquefasciatus Southern house mosquito 14 14
No Yes Anopheles darlingi 22 American malaria mosquito 9 8
No Yes Anopheles gambiae 49_3j African malaria mosquito 11 11
No Yes Tribolium castaneum 3.0 Red flour beetle 15 14
No Yes Pediculus humanus corporis (Early assembly) Human body louse 13 13
No Yes Acyrthosiphon pisum Pea aphid 8 8
No Yes Rhodnius prolixus 22   11 11
No Yes Daphnia pulex Common water flea 13 12
No Yes Strigamia maritima 22   17 16
No Yes Sarcoptes scabiei   6 6
No Yes Tetranychus urticae Two-spotted spider mite 9 9
No Yes Ixodes scapularis (Preliminary) Black-legged tick 10 10
No Yes Pristionchus pacificus   8 8
No Yes Meloidogyne incognita Southern root-knot nematode 1 1
No Yes Meloidogyne hapla   3 3
No Yes Onchocerca volvulus 22   11 11
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 22 22
No Yes Caenorhabditis japonica   8 8
No Yes Caenorhabditis brenneri   18 18
No Yes Caenorhabditis remanei   12 12
No Yes Caenorhabditis elegans 76_235 Roundworm 21 21
No Yes Caenorhabditis briggsae 2   9 9
No Yes Trichinella spiralis 22   7 7
No Yes Hymenolepis microstoma   5 5
No Yes Echinococcus multilocularis   6 6
No Yes Echinococcus granulosus   7 7
No Yes Taenia solium Pork tapeworm 7 7
No Yes Schistosoma mansoni   6 6
No Yes Mnemiopsis leidyi Sea walnut 11 10
No Yes Acropora digitifera v1.0   250 211
No Yes Nematostella vectensis 1.0 Starlet sea anemone 58 47
No Yes Hydra vulgaris   65 54
No Yes Amphimedon queenslandica   336 313
No Yes Trichoplax adhaerens   127 108
No Yes Eubacterium eligens ATCC 27750   1 1
No Yes Nitrosococcus halophilus Nc4   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 126 111
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 27 27
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 14 14
No Yes Ascaris suum Victoria/Ghent Pig roundworm 8 8
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 15 15
No Yes Homo sapiens 75_37 (old version GRC) Human 625 583
No Yes Homo sapiens (NCBI version) Human 194 169
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 93 87
No Yes Heliconius numata (Incomplete)   2 2
No Yes Loa loa v3.3 (Request) Eye worm 10 10
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 10 10
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 10 10
No Yes Homo sapiens 69_37 Human 108 100
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 90 82
No Yes Gorilla gorilla 69_3.1 Western gorilla 86 80
No Yes Pongo abelii 69_2 Sumatran orangutan 83 75
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 83 74
No Yes Macaca mulatta 69_1 Rhesus monkey 84 78
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 86 77
No Yes Otolemur garnettii 69_3 Small-eared galago 84 76
No Yes Microcebus murinus 69_1 Gray mouse lemur 66 60
No Yes Rattus norvegicus 69_3.4 Norway rat 83 77
No Yes Mus musculus 69_38 House mouse 93 86
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 65 62
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 77 69
No Yes Cavia porcellus 69_3 Domestic guinea pig 66 59
No Yes Oryctolagus cuniculus 69_2 Rabbit 70 65
No Yes Ochotona princeps 69 American pika 65 60
No Yes Tupaia belangeri 69 Northern tree shrew 51 49
No Yes Sus scrofa 69_10.2 Pig 80 74
No Yes Bos taurus 69_3.1 Cattle 76 70
No Yes Vicugna pacos 69_1 Alpaca 41 37
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 69 62
No Yes Mustela putorius furo 69_1.0 Domestic ferret 78 70
No Yes Ailuropoda melanoleuca 69_1 Giant panda 80 71
No Yes Canis familiaris 69_3.1 Dog 83 74
No Yes Felis catus 69 Domestic cat 57 52
No Yes Equus caballus 69_2 Horse 77 70
No Yes Myotis lucifugus 69_2.0 Little brown bat 81 74
No Yes Pteropus vampyrus 69_1 Large flying fox 69 65
No Yes Sorex araneus 69_1 European shrew 46 40
No Yes Erinaceus europaeus 69 Western European hedgehog 50 44
No Yes Procavia capensis 69_1 Cape rock hyrax 58 53
No Yes Loxodonta africana 69_3 African savanna elephant 78 70
No Yes Echinops telfairi 69 Small Madagascar hedgehog 50 48
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 58 53
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 37 35
No Yes Macropus eugenii 69_1.0 Tammar wallaby 60 55
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 69 64
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 79 71
No Yes Ornithorhynchus anatinus 69_5 Platypus 56 49
No Yes Petromyzon marinus 69_7.0 Sea lamprey 22 20
No Yes Meleagris gallopavo 69_2 Turkey 63 56
No Yes Gallus gallus 69_2 Chicken 55 49
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 55 50
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 70 63
No Yes Anolis carolinensis 69_2.0 Green anole 50 47
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 66 58
No Yes Latimeria chalumnae 69_1 Coelacanth 73 65
No Yes Gadus morhua 69_1 Atlantic cod 66 62
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 56 52
No Yes Takifugu rubripes 69_4 Torafugu 66 60
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 94 85
No Yes Oryzias latipes 69_1 Japanese medaka 57 55
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 83 76
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 87 79
No Yes Danio rerio 69_9 Zebrafish 130 119
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 15 15
No Yes Ciona intestinalis 69 Vase tunicate 25 22
No Yes Drosophila melanogaster 69_5 Fruit fly 10 10
No Yes Caenorhabditis elegans 69_215 Roundworm 9 9
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   1 1
No Yes Combined (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   1 1
No Yes NCBI 2017_08 genome   48705 43517
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   3440 2843
No Yes Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing switchgr (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   24966 22625
No Yes Global Ocean Sampling Expedition (GOS)   1 1
No Yes NCBI plasmid sequences (Plasmids)   1 1
No Yes NCBI viral sequences (Viral)   21 19
No Yes PDB chains (SCOP 1.75) (PDB)   25 25
No Yes Protein Data Bank (all PDB sequenc)   460 435
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   583 583
No Yes TargetDB (Targets)   202 181
No Yes UniProt viral sequences (Viral)   45 42

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]