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  Home > Genomes > Ochotona princeps 69 > LDL receptor-like module domains


LDL receptor-like module superfamily domain assignments
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Ochotona princeps 69

Assignment details

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Ochotona princeps 69 has 188 significant domains in 39 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSOPRP00000000703   0.00000000367   648-690   LDL receptor-like module  
  0.0000000038   574-611   LDL receptor-like module  
  0.00000000694   263-300   LDL receptor-like module  
  0.0000000122   338-373   LDL receptor-like module  
  0.0000000196   377-417   LDL receptor-like module  
  0.0000000223   298-337   LDL receptor-like module  
  0.00000034   614-646   LDL receptor-like module  
ENSOPRP00000000705   0.000000000471   1302-1340   LDL receptor-like module  
  0.00000000367   1264-1299   LDL receptor-like module  
  0.00000000511   1224-1262   LDL receptor-like module  
ENSOPRP00000000718   0.000000000406   327-365   LDL receptor-like module  
ENSOPRP00000000735   0.000000012   193-229   LDL receptor-like module  
ENSOPRP00000000960   0.0000000000262   400-437   LDL receptor-like module  
  0.000000105   147-177   LDL receptor-like module  
  0.0000772   330-355   LDL receptor-like module  
  0.00406   358-399   LDL receptor-like module  
ENSOPRP00000001698   0.0000000301   291-327   LDL receptor-like module  
ENSOPRP00000002541   0.000000124   147-181   LDL receptor-like module  
ENSOPRP00000002621   0.00000000576   309-345   LDL receptor-like module  
ENSOPRP00000002711   0.000000000537   323-359   LDL receptor-like module  
  0.000000000668   282-318   LDL receptor-like module  
  0.00000000117   366-409   LDL receptor-like module  
  0.00000000641   194-234   LDL receptor-like module  
ENSOPRP00000003408   0.0000417   115-156   LDL receptor-like module  
ENSOPRP00000003526   0.00000000615   140-173   LDL receptor-like module  
ENSOPRP00000003848   0.00000000000393   3-40   LDL receptor-like module  
  0.0000000000314   121-160   LDL receptor-like module  
  0.000000000157   42-80   LDL receptor-like module  
  0.00000000109   159-197   LDL receptor-like module  
  0.00000000314   79-121   LDL receptor-like module  
  0.000000432   206-241   LDL receptor-like module  
ENSOPRP00000003856   0.000000183   106-141   LDL receptor-like module  
ENSOPRP00000004899   0.00000000000484   1260-1301   LDL receptor-like module  
  0.0000000000131   1060-1099   LDL receptor-like module  
  0.0000000000406   2729-2770   LDL receptor-like module  
  0.0000000000694   26-63   LDL receptor-like module  
  0.0000000000785   2980-3022   LDL receptor-like module  
  0.000000000131   2851-2890   LDL receptor-like module  
  0.000000000144   3620-3659   LDL receptor-like module  
  0.000000000236   2897-2933   LDL receptor-like module  
  0.00000000034   215-255   LDL receptor-like module  
  0.000000000406   1101-1139   LDL receptor-like module  
  0.000000000419   3918-3956   LDL receptor-like module  
  0.000000000654   3713-3747   LDL receptor-like module  
  0.000000000969   66-102   LDL receptor-like module  
  0.00000000144   1018-1056   LDL receptor-like module  
  0.00000000209   3833-3869   LDL receptor-like module  
  0.00000000223   3747-3786   LDL receptor-like module  
  0.00000000223   3790-3827   LDL receptor-like module  
  0.00000000262   181-217   LDL receptor-like module  
  0.00000000511   3578-3622   LDL receptor-like module  
  0.00000000537   106-144   LDL receptor-like module  
  0.00000000838   2692-2730   LDL receptor-like module  
  0.0000000109   1224-1259   LDL receptor-like module  
  0.000000011   1143-1177   LDL receptor-like module  
  0.0000000157   3540-3581   LDL receptor-like module  
  0.000000017   3503-3538   LDL receptor-like module  
  0.0000000393   3875-3913   LDL receptor-like module  
  0.000000183   1180-1218   LDL receptor-like module  
  0.000000249   146-179   LDL receptor-like module  
  0.000000393   2937-2981   LDL receptor-like module  
  0.000000785   3023-3061   LDL receptor-like module  
  0.00000106   1305-1341   LDL receptor-like module  
  0.00000122   260-292   LDL receptor-like module  
  0.0000013   2775-2811   LDL receptor-like module  
  0.00000537   2821-2860   LDL receptor-like module  
  0.000157   3061-3091   LDL receptor-like module  
ENSOPRP00000004966   0.000000000144   3626-3663   LDL receptor-like module  
  0.000000000183   914-958   LDL receptor-like module  
  0.000000000209   3507-3544   LDL receptor-like module  
  0.000000000209   2925-2966   LDL receptor-like module  
  0.000000000262   3665-3701   LDL receptor-like module  
  0.000000000445   878-917   LDL receptor-like module  
  0.00000000055   1001-1039   LDL receptor-like module  
  0.00000000126   2794-2830   LDL receptor-like module  
  0.00000000144   2837-2871   LDL receptor-like module  
  0.00000000183   1040-1076   LDL receptor-like module  
  0.00000000327   3586-3621   LDL receptor-like module  
  0.00000000563   2580-2621   LDL receptor-like module  
  0.00000000576   3543-3583   LDL receptor-like module  
  0.00000000798   2621-2660   LDL receptor-like module  
  0.0000000144   66-101   LDL receptor-like module  
  0.0000000144   2753-2791   LDL receptor-like module  
  0.0000000484   2674-2710   LDL receptor-like module  
  0.0000000864   2873-2914   LDL receptor-like module  
  0.0000000864   3707-3744   LDL receptor-like module  
  0.000000288   2545-2582   LDL receptor-like module  
  0.000000484   1170-1205   LDL receptor-like module  
  0.000000733   3354-3385   LDL receptor-like module  
  0.0000759   1144-1167   LDL receptor-like module  
ENSOPRP00000005122   0.000000851   80-113   LDL receptor-like module  
  0.0000131   163-204   LDL receptor-like module  
  0.000115   127-156   LDL receptor-like module  
ENSOPRP00000005538   0.0000000000127   119-159   LDL receptor-like module  
  0.0000000000471   3-40   LDL receptor-like module  
  0.0000000000537   80-121   LDL receptor-like module  
  0.000000000406   38-81   LDL receptor-like module  
  0.000000000707   172-208   LDL receptor-like module  
  0.000000000995   211-248   LDL receptor-like module  
  0.0000000115   251-290   LDL receptor-like module  
ENSOPRP00000005834   0.000000000017   423-461   LDL receptor-like module  
  0.00000000327   137-173   LDL receptor-like module  
  0.000000124   384-422   LDL receptor-like module  
  0.000000144   185-227   LDL receptor-like module  
  0.000000707   347-384   LDL receptor-like module  
ENSOPRP00000005908   0.0000617   103-129   LDL receptor-like module  
ENSOPRP00000005918   0.00000017   123-155   LDL receptor-like module  
ENSOPRP00000006320   0.000012   387-426   LDL receptor-like module  
  0.00589   173-206   LDL receptor-like module  
ENSOPRP00000007929   0.00000000000432   5-42   LDL receptor-like module  
  0.0000000000131   75-118   LDL receptor-like module  
ENSOPRP00000008278   0.0000000000445   39-76   LDL receptor-like module  
  0.0000000000668   287-326   LDL receptor-like module  
  0.000000000367   251-288   LDL receptor-like module  
  0.00000000038   161-196   LDL receptor-like module  
  0.000000000406   80-123   LDL receptor-like module  
  0.000000000511   200-235   LDL receptor-like module  
  0.0000000262   116-158   LDL receptor-like module  
ENSOPRP00000008594   0.0000000000113   246-286   LDL receptor-like module  
  0.00000000017   210-248   LDL receptor-like module  
  0.00000000017   129-167   LDL receptor-like module  
  0.00000000038   48-87   LDL receptor-like module  
  0.000000000641   291-327   LDL receptor-like module  
  0.00000000484   86-124   LDL receptor-like module  
  0.00000223   8-49   LDL receptor-like module  
ENSOPRP00000008733   0.000000000126   208-245   LDL receptor-like module  
  0.0000000497   285-324   LDL receptor-like module  
ENSOPRP00000009538   0.0000000000602   1414-1452   LDL receptor-like module  
  0.000000000196   1321-1357   LDL receptor-like module  
  0.000000000275   1151-1192   LDL receptor-like module  
  0.000000000654   1194-1231   LDL receptor-like module  
  0.00000000223   1075-1112   LDL receptor-like module  
  0.00000000432   1236-1269   LDL receptor-like module  
  0.00000000445   1368-1401   LDL receptor-like module  
  0.0000000105   1468-1505   LDL receptor-like module  
  0.000000236   1508-1547   LDL receptor-like module  
  0.000000236   1119-1152   LDL receptor-like module  
  0.00000262   1273-1308   LDL receptor-like module  
ENSOPRP00000010259   0.0000000000524   640-678   LDL receptor-like module  
ENSOPRP00000010879   0.000000000668   1313-1351   LDL receptor-like module  
  0.00000000128   1234-1274   LDL receptor-like module  
  0.0000000038   1275-1311   LDL receptor-like module  
ENSOPRP00000011058   0.000000000196   164-201   LDL receptor-like module  
  0.0000000012   210-249   LDL receptor-like module  
  0.00000314   418-455   LDL receptor-like module  
  0.00314   391-417   LDL receptor-like module  
ENSOPRP00000011570   0.00000000038   449-485   LDL receptor-like module  
  0.00000000124   485-522   LDL receptor-like module  
  0.00000000301   522-556   LDL receptor-like module  
  0.00000000435   562-600   LDL receptor-like module  
ENSOPRP00000011832   0.000000000275   302-338   LDL receptor-like module  
  0.00000000367   378-415   LDL receptor-like module  
  0.0000000038   261-297   LDL receptor-like module  
  0.00000000563   338-373   LDL receptor-like module  
  0.000000262   460-500   LDL receptor-like module  
  0.00000288   539-575   LDL receptor-like module  
ENSOPRP00000012312   0.000000000681   299-335   LDL receptor-like module  
ENSOPRP00000012409   0.000000000122   3567-3607   LDL receptor-like module  
  0.000000000131   928-968   LDL receptor-like module  
  0.000000000144   847-887   LDL receptor-like module  
  0.000000000157   24-63   LDL receptor-like module  
  0.000000000275   3610-3646   LDL receptor-like module  
  0.00000000034   2691-2728   LDL receptor-like module  
  0.000000000393   3651-3696   LDL receptor-like module  
  0.000000000419   3367-3407   LDL receptor-like module  
  0.000000000432   888-930   LDL receptor-like module  
  0.000000000432   1013-1051   LDL receptor-like module  
  0.000000000602   3485-3526   LDL receptor-like module  
  0.000000000641   973-1011   LDL receptor-like module  
  0.00000000124   3529-3568   LDL receptor-like module  
  0.00000000144   1056-1096   LDL receptor-like module  
  0.00000000223   2813-2849   LDL receptor-like module  
  0.00000000497   3449-3484   LDL receptor-like module  
  0.0000000055   2731-2765   LDL receptor-like module  
  0.00000000812   2598-2637   LDL receptor-like module  
  0.00000000956   2851-2890   LDL receptor-like module  
  0.0000000109   3409-3447   LDL receptor-like module  
  0.0000000128   2561-2598   LDL receptor-like module  
  0.000000017   2903-2938   LDL receptor-like module  
  0.0000000183   2771-2805   LDL receptor-like module  
  0.000000236   71-106   LDL receptor-like module  
  0.00000038   1105-1139   LDL receptor-like module  
  0.000000393   1142-1177   LDL receptor-like module  
  0.000000511   3739-3774   LDL receptor-like module  
  0.000000628   2657-2687   LDL receptor-like module  
  0.000000733   3334-3365   LDL receptor-like module  
ENSOPRP00000012941   0.000000589   417-448   LDL receptor-like module  
  0.0000223   382-415   LDL receptor-like module  
ENSOPRP00000013364   0.00000000209   38-78   LDL receptor-like module  
ENSOPRP00000014368   0.00000000471   118-156   LDL receptor-like module  
ENSOPRP00000015004   0.0000000109   262-299   LDL receptor-like module  
  0.000209   425-453   LDL receptor-like module  
ENSOPRP00000015084   0.0000877   125-149   LDL receptor-like module  
ENSOPRP00000015325   0.00000367   147-185   LDL receptor-like module  

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Select to display   Genome       Domains   Proteins
No Yes ALL   327216 327216
No Yes Homo sapiens 76_38 Human 548 151
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 216 47
No Yes Gorilla gorilla 76_3.1 Western gorilla 276 65
No Yes Pongo abelii 76_2 Sumatran orangutan 204 46
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 205 51
No Yes Papio anubis 76 Olive baboon 223 47
No Yes Macaca mulatta 76_1 Rhesus monkey 283 70
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 461 115
No Yes Otolemur garnettii 76_3 Small-eared galago 203 44
No Yes Microcebus murinus 76_1 Gray mouse lemur 178 42
No Yes Rattus norvegicus 76_5.0 Norway rat 208 49
No Yes Mus musculus 76_38 House mouse 402 97
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 182 41
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 224 46
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 238 49
No Yes Cavia porcellus 76_3 Domestic guinea pig 223 51
No Yes Oryctolagus cuniculus 76_2 Rabbit 225 50
No Yes Ochotona princeps 76 American pika 188 39
No Yes Tupaia belangeri 76 Northern tree shrew 156 37
No Yes Sus scrofa 76_10.2 Pig 167 58
No Yes Bos taurus 76_3.1 Cattle 211 52
No Yes Ovis aries 76_3.1 Sheep 271 58
No Yes Vicugna pacos 76_1 Alpaca 117 23
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 196 45
No Yes Mustela putorius furo 76_1.0 Domestic ferret 233 47
No Yes Ailuropoda melanoleuca 76_1 Giant panda 261 52
No Yes Canis familiaris 76_3.1 Dog 374 66
No Yes Felis catus 76_6.2 Domestic cat 246 53
No Yes Equus caballus 76_2 Horse 321 60
No Yes Myotis lucifugus 76_2.0 Little brown bat 187 45
No Yes Pteropus vampyrus 76_1 Large flying fox 203 43
No Yes Sorex araneus 76_1 European shrew 106 25
No Yes Erinaceus europaeus 76 Western European hedgehog 139 33
No Yes Procavia capensis 76_1 Cape rock hyrax 174 36
No Yes Loxodonta africana 76_3 African savanna elephant 236 56
No Yes Echinops telfairi 76 Small Madagascar hedgehog 144 32
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 268 57
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 117 25
No Yes Macropus eugenii 76_1.0 Tammar wallaby 183 39
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 228 61
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 214 49
No Yes Ornithorhynchus anatinus 76_5 Platypus 206 53
No Yes Saccoglossus kowalevskii v3.0   1261 297
No Yes Petromyzon marinus 76_7.0 Sea lamprey 203 25
No Yes Meleagris gallopavo 76_2 Turkey 201 50
No Yes Gallus gallus 76_4 Chicken 222 45
No Yes Anas platyrhynchos 76_1.0 Mallard 185 45
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 193 44
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 218 43
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 212 59
No Yes Anolis carolinensis 76_2.0 Green anole 230 49
No Yes Xenopus laevis African clawed frog 176 45
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 231 62
No Yes Latimeria chalumnae 76_1 Coelacanth 249 52
No Yes Lepisosteus oculatus 76 Spotted gar 373 70
No Yes Gadus morhua 76_1 Atlantic cod 251 50
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 445 69
No Yes Takifugu rubripes 76_4 Torafugu 1153 201
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 365 68
No Yes Oryzias latipes 76_1 Japanese medaka 304 56
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 308 56
No Yes Poecilia formosa 76 Amazon molly 313 57
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 440 81
No Yes Astyanax mexicanus 76 Mexican tetra 293 73
No Yes Danio rerio 76_9 Zebrafish 537 103
No Yes Oikopleura dioica   54 30
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 454 80
No Yes Ciona intestinalis 76 Vase tunicate 156 67
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 601 193
No Yes Adineta vaga   274 125
No Yes Octopus bimaculoides 280   398 81
No Yes Crassostrea gigas 22 Pacific oyster 237 86
No Yes Lottia gigantea Owl limpet 212 60
No Yes Helobdella robusta   208 57
No Yes Capitella sp. I   359 115
No Yes Danaus plexippus OGS1.0 Monarch butterfly 163 38
No Yes Heliconius melpomene Postman butterfly 145 29
No Yes Bombyx mori Domestic silkworm 97 41
No Yes Nasonia vitripennis Jewel wasp 89 27
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 323 64
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 128 38
No Yes Linepithema humile v1.1 Argentine ant 122 43
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 116 43
No Yes Solenopsis invicta v.2.2.3 Red fire ant 98 38
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 126 36
No Yes Atta cephalotes v1.1   125 40
No Yes Camponotus floridanus v3.3 Florida carpenter ant 131 35
No Yes Lucilia cuprina Australian sheep blowfly 189 33
No Yes Drosophila grimshawi 1.3   174 37
No Yes Drosophila willistoni 1.3   172 39
No Yes Drosophila pseudoobscura 2.13   181 42
No Yes Drosophila persimilis 1.3   170 43
No Yes Drosophila suzukii   171 33
No Yes Drosophila yakuba 1.3   172 38
No Yes Drosophila simulans 1.3   99 33
No Yes Drosophila sechellia 1.3   155 40
No Yes Drosophila melanogaster 76_5 Fruit fly 643 97
No Yes Drosophila erecta 1.3   173 37
No Yes Drosophila ananassae 1.3   157 32
No Yes Drosophila virilis 1.2   158 36
No Yes Drosophila mojavensis 1.3   171 37
No Yes Megaselia scalaris 22   44 19
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 166 35
No Yes Culex pipiens quinquefasciatus Southern house mosquito 107 38
No Yes Anopheles darlingi 22 American malaria mosquito 118 28
No Yes Anopheles gambiae 49_3j African malaria mosquito 161 32
No Yes Tribolium castaneum 3.0 Red flour beetle 179 43
No Yes Pediculus humanus corporis (Early assembly) Human body louse 171 34
No Yes Acyrthosiphon pisum Pea aphid 150 36
No Yes Rhodnius prolixus 22   125 30
No Yes Daphnia pulex Common water flea 221 61
No Yes Strigamia maritima 22   202 47
No Yes Sarcoptes scabiei   128 42
No Yes Tetranychus urticae Two-spotted spider mite 193 71
No Yes Ixodes scapularis (Preliminary) Black-legged tick 139 44
No Yes Pristionchus pacificus   91 28
No Yes Meloidogyne incognita Southern root-knot nematode 95 18
No Yes Meloidogyne hapla   27 13
No Yes Onchocerca volvulus 22   73 17
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 129 27
No Yes Caenorhabditis japonica   103 24
No Yes Caenorhabditis brenneri   168 39
No Yes Caenorhabditis remanei   123 29
No Yes Caenorhabditis elegans 76_235 Roundworm 177 44
No Yes Caenorhabditis briggsae 2   118 26
No Yes Trichinella spiralis 22   119 32
No Yes Hymenolepis microstoma   45 11
No Yes Echinococcus multilocularis   39 13
No Yes Echinococcus granulosus   38 12
No Yes Taenia solium Pork tapeworm 35 17
No Yes Schistosoma mansoni   18 9
No Yes Mnemiopsis leidyi Sea walnut 413 204
No Yes Thelohanellus kitauei   270 126
No Yes Acropora digitifera v1.0   105 35
No Yes Nematostella vectensis 1.0 Starlet sea anemone 144 35
No Yes Hydra vulgaris   77 17
No Yes Amphimedon queenslandica   13 3
No Yes Trichoplax adhaerens   103 18
No Yes Proterospongia sp. ATCC 50818   2 2
No Yes Monosiga brevicollis   17 17
No Yes Sphaeroforma arctica JP610   1 1
No Yes Capsaspora owczarzaki ATCC 30864   2 2
No Yes Rhizopus oryzae RA 99-880   1 1
No Yes Rhizomucor miehei CAU432   1 1
No Yes Sphaerobolus stellatus v1.0   1 1
No Yes Tulasnella calospora AL13/4D v1.0   1 1
No Yes Botrytis cinerea B05.10   1 1
No Yes Sclerotinia sclerotiorum   1 1
No Yes Zasmidium cellare ATCC 36951 v1.0   1 1
No Yes Paracoccidioides brasiliensis Pb18   1 1
No Yes Histoplasma capsulatum class NAmI strain WU24   1 1
No Yes Penicillium chrysogenum Wisconsin 54-1255   1 1
No Yes Penicillium chrysogenum v1.0   1 1
No Yes Aspergillus acidus v1.0   1 1
No Yes Aspergillus brasiliensis v1.0   1 1
No Yes Aspergillus terreus NIH2624   1 1
No Yes Aspergillus tubingensis v1.0   1 1
No Yes Aspergillus niger 22   1 1
No Yes Aspergillus niger ATCC 1015   1 1
No Yes Tuber melanosporum Mel28 22   1 1
No Yes Tuber melanosporum Vittad Perigord truffle 1 1
No Yes Saccharomyces paradoxus MIT   1 1
No Yes Schizosaccharomyces japonicus yFS275   1 1
No Yes Catenaria anguillulae PL171 v1.0   1 1
No Yes Allomyces macrogynus ATCC 38327   1 1
No Yes Dictyostelium purpureum   1 1
No Yes Gossypium raimondii v221   2 2
No Yes Citrus clementina v165   2 2
No Yes Citrus sinensis v154 Sweet orange 2 2
No Yes Manihot esculenta v147 Cassava 1 1
No Yes Populus trichocarpa v156 Black cottonwood 1 1
No Yes Solanum lycopersicum v.2.3 Tomato 1 1
No Yes Solanum tuberosum Potato 3 3
No Yes Triticum aestivum 22 Bread wheat 5 5
No Yes Brachypodium distachyon Stiff brome 3 3
No Yes Panicum virgatum v202 Switchgrass 1 1
No Yes Musa balbisiana Balbis banana 1 1
No Yes Musa acuminata 22 Wild Malaysian banana 2 2
No Yes Coccomyxa subellipsoidea sp. C-169 v2   1 1
No Yes Volvox carteri f. nagariensis   1 1
No Yes Volvox carteri v199   1 1
No Yes Chlamydomonas reinhardtii 4.0   1 1
No Yes Thecamonas trahens ATCC 50062   1 1
No Yes Bigelowiella natans CCMP2755 22   2 2
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   1 1
No Yes Trypanosoma vivax   1 1
No Yes Trypanosoma congolense 2.4   1 1
No Yes Trypanosoma brucei gambiense v4.1   1 1
No Yes Trypanosoma brucei TREU927 v4.1   1 1
No Yes Pythium iwayamai DAOM BR242034 22   1 1
No Yes Pythium vexans DAOM BR484 22   1 1
No Yes Phytophthora sojae 1.1   1 1
No Yes Perkinsus marinus ATCC 50983   2 2
No Yes Naegleria gruberi   1 1
No Yes Trichomonas vaginalis   8 6
No Yes Emiliania huxleyi CCMP1516   1 1
No Yes Haliangium ochraceum DSM 14365   4 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 272 61
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 446 71
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 209 34
No Yes Ascaris suum Victoria/Ghent Pig roundworm 106 28
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 150 35
No Yes Cryptococcus neoformans var. grubii H99   1 1
No Yes Cryptococcus neoformans B-3501A   1 1
No Yes Cryptococcus neoformans JEC21   1 1
No Yes Paracoccidioides brasiliensis Pb03   1 1
No Yes Histoplasma capsulatum H88   1 1
No Yes Histoplasma capsulatum G186AR   1 1
No Yes Batrachochytrium dendrobatidis JAM81   1 1
No Yes Trypanosoma brucei Lister 427 v4.1   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 505 148
No Yes Homo sapiens (NCBI version) Human 303 75
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 220 45
No Yes Heliconius numata (Incomplete)   12 9
No Yes Loa loa v3.3 (Request) Eye worm 74 20
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 63 26
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 55 14
No Yes Moniliophthora perniciosa FA553 (Genome survey)   1 1
No Yes Picea sitchensis (Incomplete) Sitka spruce 1 1
No Yes Ricinus communis (Early assembly) Castor bean 1 1
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   3 3
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 1 1
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 1 1
No Yes Homo sapiens 69_37 Human 219 45
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 212 44
No Yes Gorilla gorilla 69_3.1 Western gorilla 191 46
No Yes Pongo abelii 69_2 Sumatran orangutan 201 44
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 188 47
No Yes Macaca mulatta 69_1 Rhesus monkey 192 45
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 216 49
No Yes Otolemur garnettii 69_3 Small-eared galago 202 43
No Yes Microcebus murinus 69_1 Gray mouse lemur 178 42
No Yes Rattus norvegicus 69_3.4 Norway rat 203 51
No Yes Mus musculus 69_38 House mouse 222 47
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 182 41
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 193 41
No Yes Cavia porcellus 69_3 Domestic guinea pig 199 49
No Yes Oryctolagus cuniculus 69_2 Rabbit 202 46
No Yes Ochotona princeps 69 American pika 188 39
No Yes Tupaia belangeri 69 Northern tree shrew 156 37
No Yes Sus scrofa 69_10.2 Pig 143 48
No Yes Bos taurus 69_3.1 Cattle 205 47
No Yes Vicugna pacos 69_1 Alpaca 117 23
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 196 45
No Yes Mustela putorius furo 69_1.0 Domestic ferret 230 46
No Yes Ailuropoda melanoleuca 69_1 Giant panda 224 48
No Yes Canis familiaris 69_3.1 Dog 243 49
No Yes Felis catus 69 Domestic cat 141 37
No Yes Equus caballus 69_2 Horse 223 52
No Yes Myotis lucifugus 69_2.0 Little brown bat 183 43
No Yes Pteropus vampyrus 69_1 Large flying fox 203 43
No Yes Sorex araneus 69_1 European shrew 106 25
No Yes Erinaceus europaeus 69 Western European hedgehog 139 33
No Yes Procavia capensis 69_1 Cape rock hyrax 174 36
No Yes Loxodonta africana 69_3 African savanna elephant 187 43
No Yes Echinops telfairi 69 Small Madagascar hedgehog 144 32
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 144 28
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 117 25
No Yes Macropus eugenii 69_1.0 Tammar wallaby 183 39
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 181 44
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 212 48
No Yes Ornithorhynchus anatinus 69_5 Platypus 175 47
No Yes Petromyzon marinus 69_7.0 Sea lamprey 168 21
No Yes Meleagris gallopavo 69_2 Turkey 169 44
No Yes Gallus gallus 69_2 Chicken 171 37
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 187 40
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 175 46
No Yes Anolis carolinensis 69_2.0 Green anole 223 47
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 220 53
No Yes Latimeria chalumnae 69_1 Coelacanth 192 43
No Yes Gadus morhua 69_1 Atlantic cod 237 47
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 307 53
No Yes Takifugu rubripes 69_4 Torafugu 272 48
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 314 55
No Yes Oryzias latipes 69_1 Japanese medaka 275 44
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 308 56
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 337 58
No Yes Danio rerio 69_9 Zebrafish 342 61
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 155 51
No Yes Ciona intestinalis 69 Vase tunicate 143 62
No Yes Drosophila melanogaster 69_5 Fruit fly 168 35
No Yes Caenorhabditis elegans 69_215 Roundworm 126 26
No Yes 1_Upper_euphotic (meta-genome)   3 2
No Yes 3_Below_base_of_euphotic (meta-genome)   1 1
No Yes 5_Below_upper_mesopelagic (meta-genome)   1 1
No Yes 6_Upper_euphotic (meta-genome)   2 1
No Yes 7_Oxygen_minimum_layer (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   1 1
No Yes NCBI 2017_08 genome   143684 28917
No Yes Protozoadb 2010_08 (Protozoadb)   18 14
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   8 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   2 2
No Yes STRING v9.0.5 (STRING)   10524 2529
No Yes Uniprot 2018_03 genome   103788 23713
No Yes Global Ocean Sampling Expedition (GOS)   193 113
No Yes PDB chains (SCOP 1.75) (PDB)   26 18
No Yes Protein Data Bank (all PDB sequenc)   207 160
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   244 244
No Yes TargetDB (Targets)   96 34

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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