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  Home > Genomes > Mus musculus 76_38 > DEATH domain domains


DEATH domain superfamily domain assignments
in
Mus musculus 76_38

Assignment details

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Mus musculus 76_38 has 231 significant domains in 216 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSMUSP00000000122   1.62e-22   338-419   DEATH domain, DD  
ENSMUSP00000003312   0.000000883   344-428   DEATH domain, DD  
ENSMUSP00000013842   1.18e-36   1-125   DEATH effector domain, DED  
ENSMUSP00000013949   3.67e-18   440-534   Caspase recruitment domain, CARD  
ENSMUSP00000014920   3.2e-16   4-96   Caspase recruitment domain, CARD  
ENSMUSP00000020157   5.27e-22   1-92   Caspase recruitment domain, CARD  
ENSMUSP00000020448   2.04e-31   4-118   DEATH domain, DD  
ENSMUSP00000021844   1.09e-25   560-652   DEATH domain, DD  
ENSMUSP00000022663   7.95e-27   265-380   DEATH domain, DD  
ENSMUSP00000023180   1.65e-24   1-90   Pyrin domain, PYD  
ENSMUSP00000024708   0.0000000000000618   408-495   DEATH domain, DD  
  0.011   594-650   Caspase recruitment domain, CARD  
ENSMUSP00000025137   6.18e-24   559-651   DEATH domain, DD  
ENSMUSP00000025691   1.37e-32   210-326   DEATH domain, DD  
ENSMUSP00000025706   8.75e-20   327-408   DEATH domain, DD  
ENSMUSP00000026580   1.56e-21   787-886   DEATH domain, DD  
ENSMUSP00000026994   4.83e-20   808-888   DEATH domain, DD  
ENSMUSP00000027009   0.00000512   15-82   Caspase recruitment domain, CARD  
ENSMUSP00000027012   0.0000129   8-81   Caspase recruitment domain, CARD  
ENSMUSP00000027015   5.1e-23   3-89   Caspase recruitment domain, CARD  
ENSMUSP00000027189   3.92e-32   1-117   DEATH effector domain, DED  
  7.3e-19   98-179   DEATH effector domain, DED  
ENSMUSP00000028259   0.00000000801   117-200   Caspase recruitment domain, CARD  
ENSMUSP00000028294   5.1e-20   8-105   Caspase recruitment domain, CARD  
ENSMUSP00000029812   1.59e-17   804-885   DEATH domain, DD  
ENSMUSP00000029842   4.71e-21   13-103   Caspase recruitment domain, CARD  
ENSMUSP00000030747   9.42e-28   1-108   Caspase recruitment domain, CARD  
ENSMUSP00000031895   3.86e-23   32-121   Caspase recruitment domain, CARD  
ENSMUSP00000032491   1.69e-22   348-451   DEATH domain, DD  
ENSMUSP00000033056   7.65e-24   1-88   Pyrin domain, PYD  
  3.63e-20   111-193   Caspase recruitment domain, CARD  
ENSMUSP00000033394   1.88e-35   1-134   DEATH domain, DD  
ENSMUSP00000033769   1.82e-24   4-116   DEATH domain, DD  
ENSMUSP00000034359   0.00000000000000443   217-307   DEATH domain, DD  
ENSMUSP00000035069   6.18e-18   133-219   DEATH domain, DD  
ENSMUSP00000035092   1.97e-25   8-121   DEATH domain, DD  
ENSMUSP00000036041   1.29e-20   1-90   Pyrin domain, PYD  
ENSMUSP00000038186   2.83e-19   1206-1291   Caspase recruitment domain, CARD  
ENSMUSP00000038833   2.21e-16   436-519   Caspase recruitment domain, CARD  
ENSMUSP00000040825   1.32e-17   1302-1392   DEATH domain, DD  
ENSMUSP00000041908   7.89e-25   4-90   Pyrin domain, PYD  
ENSMUSP00000042071   0.0000033   4-85   Pyrin domain, PYD  
ENSMUSP00000042312   0.0000377   255-343   DEATH domain, DD  
ENSMUSP00000043765   5.59e-26   611-720   DEATH domain, DD  
ENSMUSP00000043881   5.3e-25   5-91   Pyrin domain, PYD  
ENSMUSP00000045077   0.0000000000000212   6-92   Pyrin domain, PYD  
ENSMUSP00000045834   5.3e-27   541-654   DEATH domain, DD  
ENSMUSP00000046503   1.14e-31   3-92   Pyrin domain, PYD  
ENSMUSP00000047569   0.0000471   40-95   Caspase recruitment domain, CARD  
ENSMUSP00000047823   8.07e-20   303-384   DEATH domain, DD  
ENSMUSP00000048376   2.9e-24   21-144   DEATH domain, DD  
ENSMUSP00000049763   0.00000000000188   24-104   DEATH effector domain, DED  
ENSMUSP00000050252   2.71e-16   6-90   Pyrin domain, PYD  
ENSMUSP00000050295   2.4e-23   1-88   Caspase recruitment domain, CARD  
  1.51e-18   110-191   DEATH domain, DD  
ENSMUSP00000050538   0.0000000000000989   8-85   Caspase recruitment domain, CARD  
  0.0000000000024   105-187   Caspase recruitment domain, CARD  
ENSMUSP00000053665   1.18e-17   17-114   Caspase recruitment domain, CARD  
ENSMUSP00000055073   6.06e-26   3-95   DEATH domain, DD  
ENSMUSP00000055747   3.81e-18   18-107   Caspase recruitment domain, CARD  
ENSMUSP00000057040   1.13e-17   371-466   DEATH domain, DD  
ENSMUSP00000059637   7.03e-21   2-86   Caspase recruitment domain, CARD  
ENSMUSP00000061643   6.06e-19   355-456   DEATH domain, DD  
ENSMUSP00000061698   1.59e-26   1429-1542   DEATH domain, DD  
ENSMUSP00000064448   1.68e-24   4-116   DEATH domain, DD  
ENSMUSP00000065107   4.94e-21   95-188   DEATH effector domain, DED  
  0.0000000107   10-79   DEATH effector domain, DED  
ENSMUSP00000066841   8.95e-30   3-92   Pyrin domain, PYD  
ENSMUSP00000068419   0.000000000000118   25-101   DEATH effector domain, DED  
ENSMUSP00000071685   1.53e-23   1-90   Pyrin domain, PYD  
ENSMUSP00000072859   0.00000000000863   769-848   DEATH domain, DD  
ENSMUSP00000072895   1.41e-21   1-90   Pyrin domain, PYD  
ENSMUSP00000073367   0.0000000436   1-89   Caspase recruitment domain, CARD  
ENSMUSP00000074159   2.06e-19   406-490   DEATH domain, DD  
ENSMUSP00000074471   2.54e-43   1-115   DEATH domain, DD  
ENSMUSP00000074758   6.67e-24   860-944   DEATH domain, DD  
ENSMUSP00000075794   2e-32   3-92   Pyrin domain, PYD  
ENSMUSP00000076666   1.32e-17   1302-1392   DEATH domain, DD  
ENSMUSP00000077080   2.24e-22   855-936   DEATH domain, DD  
ENSMUSP00000078440   6.59e-26   2-89   Pyrin domain, PYD  
ENSMUSP00000078705   0.00000000000989   207-286   DEATH domain, DD  
  0.000000000903   285-370   DEATH domain, DD  
ENSMUSP00000079976   0.00000283   4-85   Pyrin domain, PYD  
ENSMUSP00000081051   1.24e-23   1409-1497   DEATH domain, DD  
ENSMUSP00000082941   9.89e-21   20-117   Caspase recruitment domain, CARD  
ENSMUSP00000083106   1.53e-20   1-90   Pyrin domain, PYD  
ENSMUSP00000086416   3.83e-25   3-93   DEATH domain, DD  
ENSMUSP00000087879   0.0000000441   1-89   Caspase recruitment domain, CARD  
ENSMUSP00000090087   1.59e-26   1447-1560   DEATH domain, DD  
ENSMUSP00000090088   1.59e-26   1450-1563   DEATH domain, DD  
ENSMUSP00000090089   7.65e-27   601-714   DEATH domain, DD  
ENSMUSP00000090090   1.62e-26   1468-1581   DEATH domain, DD  
ENSMUSP00000091422   9.89e-23   447-545   Caspase recruitment domain, CARD  
ENSMUSP00000091588   1.79e-19   1080-1168   Caspase recruitment domain, CARD  
ENSMUSP00000095075   0.000000000000118   25-101   DEATH effector domain, DED  
ENSMUSP00000095329   5.18e-21   95-188   DEATH effector domain, DED  
  0.0000000108   10-79   DEATH effector domain, DED  
ENSMUSP00000095414   7.53e-28   1-108   Caspase recruitment domain, CARD  
ENSMUSP00000097795   1.77e-24   1-90   Pyrin domain, PYD  
ENSMUSP00000097876   5.1e-20   8-105   Caspase recruitment domain, CARD  
ENSMUSP00000098707   6.59e-26   2-89   Pyrin domain, PYD  
ENSMUSP00000099001   1.58e-24   4-116   DEATH domain, DD  
ENSMUSP00000101627   1.56e-21   787-886   DEATH domain, DD  
ENSMUSP00000101660   1.14e-20   15-99   Pyrin domain, PYD  
ENSMUSP00000101843   6.28e-24   841-925   DEATH domain, DD  
ENSMUSP00000101857   1.18e-17   17-114   Caspase recruitment domain, CARD  
ENSMUSP00000104024   1.65e-23   1-90   Pyrin domain, PYD  
ENSMUSP00000104154   1.79e-19   1083-1171   Caspase recruitment domain, CARD  
ENSMUSP00000104155   1.79e-19   1083-1171   Caspase recruitment domain, CARD  
ENSMUSP00000104156   1.79e-19   1080-1168   Caspase recruitment domain, CARD  
ENSMUSP00000104158   2.5e-19   1088-1173   Caspase recruitment domain, CARD  
ENSMUSP00000104293   9.18e-20   11-92   Pyrin domain, PYD  
ENSMUSP00000104871   2.5e-43   1-115   DEATH domain, DD  
ENSMUSP00000105262   0.0000000000000942   15-92   Caspase recruitment domain, CARD  
  0.00000000000334   112-193   Caspase recruitment domain, CARD  
ENSMUSP00000105621   4.41e-20   752-832   DEATH domain, DD  
ENSMUSP00000106316   1.14e-23   1430-1518   DEATH domain, DD  
ENSMUSP00000106841   0.00000471   3-84   DEATH domain, DD  
ENSMUSP00000106878   4.59e-24   1-103   DEATH effector domain, DED  
ENSMUSP00000106930   0.000000000000118   25-101   DEATH effector domain, DED  
ENSMUSP00000106931   0.000000000000118   25-101   DEATH effector domain, DED  
ENSMUSP00000107512   0.00000000000863   769-848   DEATH domain, DD  
ENSMUSP00000108078   0.00000000753   117-200   Caspase recruitment domain, CARD  
ENSMUSP00000109948   1.88e-21   95-188   DEATH effector domain, DED  
  0.00000000259   10-79   DEATH effector domain, DED  
ENSMUSP00000109952   4.94e-21   95-188   DEATH effector domain, DED  
  0.0000000107   10-79   DEATH effector domain, DED  
ENSMUSP00000109992   1.68e-24   4-116   DEATH domain, DD  
ENSMUSP00000109993   1.41e-24   4-116   DEATH domain, DD  
ENSMUSP00000109994   1.68e-24   4-116   DEATH domain, DD  
ENSMUSP00000110000   1.68e-24   4-116   DEATH domain, DD  
ENSMUSP00000112398   1.53e-23   1-90   Pyrin domain, PYD  
ENSMUSP00000112441   8.95e-30   3-92   Pyrin domain, PYD  
ENSMUSP00000112833   4.52e-17   4-96   Caspase recruitment domain, CARD  
ENSMUSP00000112850   1.28e-23   1409-1497   DEATH domain, DD  
ENSMUSP00000113095   5.3e-25   5-91   Pyrin domain, PYD  
ENSMUSP00000113318   1.53e-23   1-90   Pyrin domain, PYD  
ENSMUSP00000113495   1.28e-23   1438-1526   DEATH domain, DD  
ENSMUSP00000113531   1.24e-23   1393-1481   DEATH domain, DD  
ENSMUSP00000113571   1.28e-23   1438-1526   DEATH domain, DD  
ENSMUSP00000113656   1.28e-23   1393-1481   DEATH domain, DD  
ENSMUSP00000113762   3.53e-22   1-90   Pyrin domain, PYD  
ENSMUSP00000113773   0.0000000000000942   8-85   Caspase recruitment domain, CARD  
  0.0000000000033   105-186   Caspase recruitment domain, CARD  
ENSMUSP00000113824   1.14e-31   3-92   Pyrin domain, PYD  
ENSMUSP00000114221   0.0000033   4-85   Pyrin domain, PYD  
ENSMUSP00000114231   2.71e-27   2-90   Pyrin domain, PYD  
ENSMUSP00000114798   0.000000000118   444-501   DEATH domain, DD  
ENSMUSP00000115158   8.63e-23   1-90   Pyrin domain, PYD  
ENSMUSP00000115531   0.000000341   83-119   DEATH domain, DD  
ENSMUSP00000115746   2.99e-19   27-109   DEATH domain, DD  
ENSMUSP00000116533   2.35e-19   994-1091   DEATH domain, DD  
ENSMUSP00000117487   5.89e-24   786-870   DEATH domain, DD  
ENSMUSP00000117735   2.37e-30   1-90   DEATH effector domain, DED  
ENSMUSP00000117966   1.24e-23   1393-1481   DEATH domain, DD  
ENSMUSP00000118212   6.67e-24   860-944   DEATH domain, DD  
ENSMUSP00000118817   1.98e-18   4-96   Caspase recruitment domain, CARD  
ENSMUSP00000119465   0.000000000000002   5-85   Pyrin domain, PYD  
ENSMUSP00000120278   0.0000000000000659   25-101   DEATH effector domain, DED  
ENSMUSP00000120861   0.0000000000000365   25-101   DEATH effector domain, DED  
ENSMUSP00000121184   2.35e-23   32-121   Caspase recruitment domain, CARD  
ENSMUSP00000121331   1.37e-28   1-107   Caspase recruitment domain, CARD  
ENSMUSP00000121333   7.89e-16   5-79   Pyrin domain, PYD  
ENSMUSP00000121480   0.00000283   4-85   Pyrin domain, PYD  
ENSMUSP00000121565   0.00000171   15-83   Caspase recruitment domain, CARD  
ENSMUSP00000122424   0.00000859   4-85   Pyrin domain, PYD  
ENSMUSP00000122628   0.0000000000000247   25-101   DEATH effector domain, DED  
ENSMUSP00000123604   5.76e-32   4-118   DEATH domain, DD  
ENSMUSP00000124134   4e-22   1-92   Caspase recruitment domain, CARD  
ENSMUSP00000124249   0.000000871   8-82   Caspase recruitment domain, CARD  
ENSMUSP00000124422   3.2e-23   1-92   Caspase recruitment domain, CARD  
ENSMUSP00000124968   3.2e-23   1-92   Caspase recruitment domain, CARD  
ENSMUSP00000125291   5.27e-22   1-92   Caspase recruitment domain, CARD  
ENSMUSP00000127375   3.92e-32   1-117   DEATH effector domain, DED  
  7.3e-19   98-179   DEATH effector domain, DED  
ENSMUSP00000128345   1.59e-17   804-885   DEATH domain, DD  
ENSMUSP00000128511   9.42e-26   501-593   DEATH domain, DD  
ENSMUSP00000128521   3.7e-19   853-931   DEATH domain, DD  
ENSMUSP00000129513   1.22e-21   73-171   Caspase recruitment domain, CARD  
ENSMUSP00000129831   1.09e-25   560-652   DEATH domain, DD  
ENSMUSP00000130487   3.81e-18   18-107   Caspase recruitment domain, CARD  
ENSMUSP00000131003   1.18e-21   24-122   Caspase recruitment domain, CARD  
ENSMUSP00000131534   0.00000000000102   692-785   DEATH domain, DD  
ENSMUSP00000132253   0.000000000000002   5-85   Pyrin domain, PYD  
ENSMUSP00000132400   0.0000412   275-363   DEATH domain, DD  
ENSMUSP00000133322   1.24e-23   1409-1497   DEATH domain, DD  
ENSMUSP00000134329   7.06e-17   5-85   Pyrin domain, PYD  
ENSMUSP00000136158   0.000000271   117-198   DEATH domain, DD  
ENSMUSP00000137636   1.88e-21   95-188   DEATH effector domain, DED  
  0.00000000259   10-79   DEATH effector domain, DED  
ENSMUSP00000137758   9.18e-20   11-92   Pyrin domain, PYD  
ENSMUSP00000138095   2.41e-26   591-701   DEATH domain, DD  
ENSMUSP00000138123   1.85e-26   591-701   DEATH domain, DD  
ENSMUSP00000138202   2.83e-25   3543-3653   DEATH domain, DD  
ENSMUSP00000138279   0.0000000000000264   130-186   DEATH domain, DD  
ENSMUSP00000138285   5.89e-27   601-714   DEATH domain, DD  
ENSMUSP00000138326   1.62e-26   1468-1581   DEATH domain, DD  
ENSMUSP00000138337   7.65e-27   601-714   DEATH domain, DD  
ENSMUSP00000138347   1.38e-26   1429-1542   DEATH domain, DD  
ENSMUSP00000138348   4.12e-26   1419-1529   DEATH domain, DD  
ENSMUSP00000138356   5.3e-27   541-654   DEATH domain, DD  
ENSMUSP00000138391   5.3e-26   658-767   DEATH domain, DD  
ENSMUSP00000138413   1.62e-26   587-697   DEATH domain, DD  
ENSMUSP00000138450   8.24e-27   263-373   DEATH domain, DD  
ENSMUSP00000138481   8.54e-27   688-801   DEATH domain, DD  
ENSMUSP00000138492   2.83e-25   3460-3570   DEATH domain, DD  
ENSMUSP00000138497   2.83e-25   3547-3657   DEATH domain, DD  
ENSMUSP00000138531   1.6e-27   59-172   DEATH domain, DD  
ENSMUSP00000138538   2.8e-25   3514-3624   DEATH domain, DD  
ENSMUSP00000138545   2.86e-25   3514-3624   DEATH domain, DD  
ENSMUSP00000138574   2e-26   140-251   DEATH domain, DD  
ENSMUSP00000138586   1.83e-26   591-701   DEATH domain, DD  
ENSMUSP00000138595   2.77e-25   3460-3570   DEATH domain, DD  
ENSMUSP00000138620   1.27e-25   1482-1591   DEATH domain, DD  
ENSMUSP00000138623   6.77e-27   601-714   DEATH domain, DD  
ENSMUSP00000138647   1.27e-25   1473-1582   DEATH domain, DD  
ENSMUSP00000138671   2.36e-26   591-701   DEATH domain, DD  
ENSMUSP00000138686   6.77e-26   2328-2438   DEATH domain, DD  
ENSMUSP00000138753   5.3e-26   484-593   DEATH domain, DD  
ENSMUSP00000138770   4.71e-26   1419-1529   DEATH domain, DD  
ENSMUSP00000139170   1.17e-20   45-129   Pyrin domain, PYD  
ENSMUSP00000139357   1.12e-20   15-99   Pyrin domain, PYD  
ENSMUSP00000139496   7.36e-26   2756-2866   DEATH domain, DD  
ENSMUSP00000140049   9.89e-23   447-545   Caspase recruitment domain, CARD  
ENSMUSP00000140191   0.000000612   3-84   DEATH domain, DD  
ENSMUSP00000140335   3.45e-32   21-137   DEATH effector domain, DED  
  7.77e-19   118-199   DEATH effector domain, DED  
ENSMUSP00000140539   0.000004   3-84   DEATH domain, DD  
ENSMUSP00000140546   3.45e-32   21-137   DEATH effector domain, DED  
  7.77e-19   118-199   DEATH effector domain, DED  
ENSMUSP00000140610   0.00000471   3-84   DEATH domain, DD  
ENSMUSP00000140724   0.000000000198   130-177   DEATH domain, DD  
 
Weak hits:
ENSMUSP00000006851   0.00288   7-47   Caspase recruitment domain, CARD  
ENSMUSP00000009340   0.0824   6-61   Pyrin domain, PYD  
ENSMUSP00000038675   0.00443   753-844   DEATH domain, DD  
ENSMUSP00000042433   0.0135   1-91   Caspase recruitment domain, CARD  
ENSMUSP00000042955   0.0318   652-731   DEATH domain, DD  
ENSMUSP00000048129   0.0115   6-59   Pyrin domain, PYD  
ENSMUSP00000061900   0.00683   6-82   DEATH domain, DD  
ENSMUSP00000062409   0.00283   6-70   Pyrin domain, PYD  
ENSMUSP00000083039   0.00377   11-76   Pyrin domain, PYD  
ENSMUSP00000086417   0.000447   3-43   DEATH domain, DD  
ENSMUSP00000087888   0.0151   6-82   DEATH domain, DD  
ENSMUSP00000095070   0.000165   11-76   Pyrin domain, PYD  
ENSMUSP00000095071   0.00471   6-82   DEATH domain, DD  
ENSMUSP00000106739   0.041   12-52   DEATH domain, DD  
ENSMUSP00000107782   0.00288   7-47   Caspase recruitment domain, CARD  
ENSMUSP00000112801   0.00553   822-897   Caspase recruitment domain, CARD  
ENSMUSP00000115105   0.00494   6-82   DEATH domain, DD  
ENSMUSP00000116097   0.00283   804-879   Caspase recruitment domain, CARD  
ENSMUSP00000116896   0.00171   421-496   Caspase recruitment domain, CARD  
ENSMUSP00000117222   0.00541   12-76   Pyrin domain, PYD  
ENSMUSP00000117470   0.00043   269-295   DEATH domain, DD  
ENSMUSP00000119350   0.0114   6-59   Pyrin domain, PYD  
ENSMUSP00000121349   0.00294   822-897   Caspase recruitment domain, CARD  
ENSMUSP00000122724   0.003   841-916   Caspase recruitment domain, CARD  
ENSMUSP00000122726   0.00124   421-496   Caspase recruitment domain, CARD  
ENSMUSP00000123037   0.00288   804-879   Caspase recruitment domain, CARD  
ENSMUSP00000126780   0.0173   42-93   Caspase recruitment domain, CARD  
ENSMUSP00000128739   0.0235   42-92   Caspase recruitment domain, CARD  
ENSMUSP00000128958   0.00377   11-76   Pyrin domain, PYD  
ENSMUSP00000129422   0.0147   51-103   Caspase recruitment domain, CARD  
ENSMUSP00000136238   0.000165   11-76   Pyrin domain, PYD  

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Select to display   Genome       Domains   Proteins
No Yes ALL   102164 102164
No Yes Homo sapiens 76_38 Human 495 454
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 95 87
No Yes Gorilla gorilla 76_3.1 Western gorilla 118 111
No Yes Pongo abelii 76_2 Sumatran orangutan 85 77
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 92 83
No Yes Papio anubis 76 Olive baboon 99 91
No Yes Macaca mulatta 76_1 Rhesus monkey 190 169
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 213 193
No Yes Otolemur garnettii 76_3 Small-eared galago 87 79
No Yes Microcebus murinus 76_1 Gray mouse lemur 66 60
No Yes Rattus norvegicus 76_5.0 Norway rat 98 93
No Yes Mus musculus 76_38 House mouse 231 216
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 66 63
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 89 79
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 65 60
No Yes Cavia porcellus 76_3 Domestic guinea pig 67 60
No Yes Oryctolagus cuniculus 76_2 Rabbit 70 65
No Yes Ochotona princeps 76 American pika 65 60
No Yes Tupaia belangeri 76 Northern tree shrew 51 49
No Yes Sus scrofa 76_10.2 Pig 101 95
No Yes Bos taurus 76_3.1 Cattle 84 78
No Yes Ovis aries 76_3.1 Sheep 88 79
No Yes Vicugna pacos 76_1 Alpaca 42 38
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 70 63
No Yes Mustela putorius furo 76_1.0 Domestic ferret 78 70
No Yes Ailuropoda melanoleuca 76_1 Giant panda 85 76
No Yes Canis familiaris 76_3.1 Dog 111 100
No Yes Felis catus 76_6.2 Domestic cat 80 73
No Yes Equus caballus 76_2 Horse 94 86
No Yes Myotis lucifugus 76_2.0 Little brown bat 89 80
No Yes Pteropus vampyrus 76_1 Large flying fox 69 65
No Yes Sorex araneus 76_1 European shrew 46 40
No Yes Erinaceus europaeus 76 Western European hedgehog 50 44
No Yes Procavia capensis 76_1 Cape rock hyrax 58 53
No Yes Loxodonta africana 76_3 African savanna elephant 101 92
No Yes Echinops telfairi 76 Small Madagascar hedgehog 50 48
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 98 91
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 37 35
No Yes Macropus eugenii 76_1.0 Tammar wallaby 60 55
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 91 84
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 81 73
No Yes Ornithorhynchus anatinus 76_5 Platypus 61 54
No Yes Saccoglossus kowalevskii v3.0   290 248
No Yes Petromyzon marinus 76_7.0 Sea lamprey 26 24
No Yes Meleagris gallopavo 76_2 Turkey 81 73
No Yes Gallus gallus 76_4 Chicken 69 63
No Yes Anas platyrhynchos 76_1.0 Mallard 63 56
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 56 51
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 62 55
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 90 80
No Yes Anolis carolinensis 76_2.0 Green anole 57 54
No Yes Xenopus laevis African clawed frog 139 117
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 77 67
No Yes Latimeria chalumnae 76_1 Coelacanth 90 79
No Yes Lepisosteus oculatus 76 Spotted gar 110 97
No Yes Gadus morhua 76_1 Atlantic cod 78 72
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 72 68
No Yes Takifugu rubripes 76_4 Torafugu 249 222
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 125 113
No Yes Oryzias latipes 76_1 Japanese medaka 65 63
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 83 76
No Yes Poecilia formosa 76 Amazon molly 92 83
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 120 110
No Yes Astyanax mexicanus 76 Mexican tetra 89 83
No Yes Danio rerio 76_9 Zebrafish 191 177
No Yes Oikopleura dioica   2 2
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 25 24
No Yes Ciona intestinalis 76 Vase tunicate 25 22
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 258 233
No Yes Adineta vaga   54 54
No Yes Octopus bimaculoides 280   213 208
No Yes Crassostrea gigas 22 Pacific oyster 113 99
No Yes Lottia gigantea Owl limpet 74 66
No Yes Helobdella robusta   38 36
No Yes Capitella sp. I   234 217
No Yes Danaus plexippus OGS1.0 Monarch butterfly 15 14
No Yes Heliconius melpomene Postman butterfly 12 12
No Yes Bombyx mori Domestic silkworm 11 11
No Yes Nasonia vitripennis Jewel wasp 9 9
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 16 16
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 14 13
No Yes Linepithema humile v1.1 Argentine ant 16 16
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 15 15
No Yes Solenopsis invicta v.2.2.3 Red fire ant 15 14
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 15 15
No Yes Atta cephalotes v1.1   14 14
No Yes Camponotus floridanus v3.3 Florida carpenter ant 15 15
No Yes Lucilia cuprina Australian sheep blowfly 9 9
No Yes Drosophila grimshawi 1.3   10 9
No Yes Drosophila willistoni 1.3   9 9
No Yes Drosophila pseudoobscura 2.13   11 10
No Yes Drosophila persimilis 1.3   10 9
No Yes Drosophila suzukii   10 10
No Yes Drosophila yakuba 1.3   11 10
No Yes Drosophila simulans 1.3   8 7
No Yes Drosophila sechellia 1.3   11 10
No Yes Drosophila melanogaster 76_5 Fruit fly 26 26
No Yes Drosophila erecta 1.3   10 10
No Yes Drosophila ananassae 1.3   11 10
No Yes Drosophila virilis 1.2   9 9
No Yes Drosophila mojavensis 1.3   9 8
No Yes Megaselia scalaris 22   6 6
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 12 12
No Yes Culex pipiens quinquefasciatus Southern house mosquito 14 14
No Yes Anopheles darlingi 22 American malaria mosquito 9 8
No Yes Anopheles gambiae 49_3j African malaria mosquito 11 11
No Yes Tribolium castaneum 3.0 Red flour beetle 15 14
No Yes Pediculus humanus corporis (Early assembly) Human body louse 13 13
No Yes Acyrthosiphon pisum Pea aphid 8 8
No Yes Rhodnius prolixus 22   11 11
No Yes Daphnia pulex Common water flea 13 12
No Yes Strigamia maritima 22   17 16
No Yes Sarcoptes scabiei   6 6
No Yes Tetranychus urticae Two-spotted spider mite 9 9
No Yes Ixodes scapularis (Preliminary) Black-legged tick 10 10
No Yes Pristionchus pacificus   8 8
No Yes Meloidogyne incognita Southern root-knot nematode 1 1
No Yes Meloidogyne hapla   3 3
No Yes Onchocerca volvulus 22   11 11
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 22 22
No Yes Caenorhabditis japonica   8 8
No Yes Caenorhabditis brenneri   18 18
No Yes Caenorhabditis remanei   12 12
No Yes Caenorhabditis elegans 76_235 Roundworm 21 21
No Yes Caenorhabditis briggsae 2   9 9
No Yes Trichinella spiralis 22   7 7
No Yes Hymenolepis microstoma   5 5
No Yes Echinococcus multilocularis   6 6
No Yes Echinococcus granulosus   7 7
No Yes Taenia solium Pork tapeworm 7 7
No Yes Schistosoma mansoni   6 6
No Yes Mnemiopsis leidyi Sea walnut 11 10
No Yes Acropora digitifera v1.0   250 211
No Yes Nematostella vectensis 1.0 Starlet sea anemone 58 47
No Yes Hydra vulgaris   65 54
No Yes Amphimedon queenslandica   336 313
No Yes Trichoplax adhaerens   127 108
No Yes Eubacterium eligens ATCC 27750   1 1
No Yes Nitrosococcus halophilus Nc4   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 126 111
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 27 27
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 14 14
No Yes Ascaris suum Victoria/Ghent Pig roundworm 8 8
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 15 15
No Yes Homo sapiens 75_37 (old version GRC) Human 625 583
No Yes Homo sapiens (NCBI version) Human 194 169
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 93 87
No Yes Heliconius numata (Incomplete)   2 2
No Yes Loa loa v3.3 (Request) Eye worm 10 10
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 10 10
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 10 10
No Yes Homo sapiens 69_37 Human 108 100
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 90 82
No Yes Gorilla gorilla 69_3.1 Western gorilla 86 80
No Yes Pongo abelii 69_2 Sumatran orangutan 83 75
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 83 74
No Yes Macaca mulatta 69_1 Rhesus monkey 84 78
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 86 77
No Yes Otolemur garnettii 69_3 Small-eared galago 84 76
No Yes Microcebus murinus 69_1 Gray mouse lemur 66 60
No Yes Rattus norvegicus 69_3.4 Norway rat 83 77
No Yes Mus musculus 69_38 House mouse 93 86
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 65 62
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 77 69
No Yes Cavia porcellus 69_3 Domestic guinea pig 66 59
No Yes Oryctolagus cuniculus 69_2 Rabbit 70 65
No Yes Ochotona princeps 69 American pika 65 60
No Yes Tupaia belangeri 69 Northern tree shrew 51 49
No Yes Sus scrofa 69_10.2 Pig 80 74
No Yes Bos taurus 69_3.1 Cattle 76 70
No Yes Vicugna pacos 69_1 Alpaca 41 37
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 69 62
No Yes Mustela putorius furo 69_1.0 Domestic ferret 78 70
No Yes Ailuropoda melanoleuca 69_1 Giant panda 80 71
No Yes Canis familiaris 69_3.1 Dog 83 74
No Yes Felis catus 69 Domestic cat 57 52
No Yes Equus caballus 69_2 Horse 77 70
No Yes Myotis lucifugus 69_2.0 Little brown bat 81 74
No Yes Pteropus vampyrus 69_1 Large flying fox 69 65
No Yes Sorex araneus 69_1 European shrew 46 40
No Yes Erinaceus europaeus 69 Western European hedgehog 50 44
No Yes Procavia capensis 69_1 Cape rock hyrax 58 53
No Yes Loxodonta africana 69_3 African savanna elephant 78 70
No Yes Echinops telfairi 69 Small Madagascar hedgehog 50 48
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 58 53
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 37 35
No Yes Macropus eugenii 69_1.0 Tammar wallaby 60 55
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 69 64
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 79 71
No Yes Ornithorhynchus anatinus 69_5 Platypus 56 49
No Yes Petromyzon marinus 69_7.0 Sea lamprey 22 20
No Yes Meleagris gallopavo 69_2 Turkey 63 56
No Yes Gallus gallus 69_2 Chicken 55 49
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 55 50
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 70 63
No Yes Anolis carolinensis 69_2.0 Green anole 50 47
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 66 58
No Yes Latimeria chalumnae 69_1 Coelacanth 73 65
No Yes Gadus morhua 69_1 Atlantic cod 66 62
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 56 52
No Yes Takifugu rubripes 69_4 Torafugu 66 60
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 94 85
No Yes Oryzias latipes 69_1 Japanese medaka 57 55
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 83 76
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 87 79
No Yes Danio rerio 69_9 Zebrafish 130 119
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 15 15
No Yes Ciona intestinalis 69 Vase tunicate 25 22
No Yes Drosophila melanogaster 69_5 Fruit fly 10 10
No Yes Caenorhabditis elegans 69_215 Roundworm 9 9
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   1 1
No Yes Combined (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   1 1
No Yes NCBI 2017_08 genome   48705 43517
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   3440 2843
No Yes Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing switchgr (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   24966 22625
No Yes Global Ocean Sampling Expedition (GOS)   1 1
No Yes NCBI plasmid sequences (Plasmids)   1 1
No Yes NCBI viral sequences (Viral)   21 19
No Yes PDB chains (SCOP 1.75) (PDB)   25 25
No Yes Protein Data Bank (all PDB sequenc)   460 435
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   583 583
No Yes TargetDB (Targets)   202 181
No Yes UniProt viral sequences (Viral)   45 42

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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