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STI-like superfamily domain assignments
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Protein Data Bank

Network of domain occurrence in all genomes

Assignment details

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Protein Data Bank (all PDB sequenc) has 226 significant domains in 226 proteins.

     

Sequence ID   Evalue   Region   Family  
1a8d_A   6.19e-69   249-451   Clostridium neurotoxins, C-terminal domain  
1af9_A   6.19e-69   249-451   Clostridium neurotoxins, C-terminal domain  
1ava_C   5.95e-68   5-178   Kunitz (STI) inhibitors  
1ava_D   5.95e-68   5-178   Kunitz (STI) inhibitors  
1avu_A   2.26e-66   2-175   Kunitz (STI) inhibitors  
1avw_B   2.02e-66   2-175   Kunitz (STI) inhibitors  
1avx_B   2.02e-66   2-175   Kunitz (STI) inhibitors  
1ba7_A   2.26e-66   2-175   Kunitz (STI) inhibitors  
1ba7_B   2.26e-66   2-175   Kunitz (STI) inhibitors  
1d0h_A   6.78e-69   266-468   Clostridium neurotoxins, C-terminal domain  
1dfq_A   5.95e-69   241-443   Clostridium neurotoxins, C-terminal domain  
1diw_A   5.83e-69   238-440   Clostridium neurotoxins, C-terminal domain  
1dll_A   5.83e-69   238-440   Clostridium neurotoxins, C-terminal domain  
1epw_A   1.1e-81   1081-1290   Clostridium neurotoxins, C-terminal domain  
1eyl_A   6.19e-51   5-179   Kunitz (STI) inhibitors  
1f31_A   1.1e-81   1081-1290   Clostridium neurotoxins, C-terminal domain  
1fmz_A   2.26e-50   5-179   Kunitz (STI) inhibitors  
1fn0_A   2.26e-50   5-179   Kunitz (STI) inhibitors  
1fv2_A   6.9e-69   269-471   Clostridium neurotoxins, C-terminal domain  
1fv3_A   6.9e-69   269-471   Clostridium neurotoxins, C-terminal domain  
1fv3_B   6.9e-69   269-471   Clostridium neurotoxins, C-terminal domain  
1g9a_A   1.1e-81   1081-1290   Clostridium neurotoxins, C-terminal domain  
1g9b_A   1.1e-81   1081-1290   Clostridium neurotoxins, C-terminal domain  
1g9c_A   1.1e-81   1081-1290   Clostridium neurotoxins, C-terminal domain  
1g9d_A   1.1e-81   1081-1290   Clostridium neurotoxins, C-terminal domain  
1i1e_A   1.1e-81   1081-1290   Clostridium neurotoxins, C-terminal domain  
1r8n_A   4.64e-69   4-176   Kunitz (STI) inhibitors  
1r8o_A   8.09e-35   3-93   Kunitz (STI) inhibitors  
1r8o_B   0.0000000000881   5-69   Kunitz (STI) inhibitors  
1s0b_A   1.1e-81   1081-1290   Clostridium neurotoxins, C-terminal domain  
1s0c_A   1.1e-81   1081-1290   Clostridium neurotoxins, C-terminal domain  
1s0d_A   1.1e-81   1081-1290   Clostridium neurotoxins, C-terminal domain  
1s0e_A   1.1e-81   1081-1290   Clostridium neurotoxins, C-terminal domain  
1s0f_A   1.1e-81   1081-1290   Clostridium neurotoxins, C-terminal domain  
1s0g_A   1.1e-81   1081-1290   Clostridium neurotoxins, C-terminal domain  
1tie_A   1.43e-53   3-168   Kunitz (STI) inhibitors  
1wba_A   2.62e-40   2-170   Kunitz (STI) inhibitors  
1wbc_A   7.85e-51   2-176   Kunitz (STI) inhibitors  
1xg6_A   9.16e-52   5-180   Kunitz (STI) inhibitors  
1yxw_A   5.83e-69   238-440   Clostridium neurotoxins, C-terminal domain  
1yyn_A   5.83e-69   238-440   Clostridium neurotoxins, C-terminal domain  
1z0h_A   1.33e-82   229-438   Clostridium neurotoxins, C-terminal domain  
1z0h_B   1.33e-82   229-438   Clostridium neurotoxins, C-terminal domain  
2bea_A   3.21e-50   5-179   Kunitz (STI) inhibitors  
2bea_B   3.21e-50   5-179   Kunitz (STI) inhibitors  
2beb_A   1.31e-50   5-179   Kunitz (STI) inhibitors  
2beb_B   1.31e-50   5-179   Kunitz (STI) inhibitors  
2dre_A   3.81e-53   5-176   Kunitz (STI) inhibitors  
2dre_B   3.81e-53   5-176   Kunitz (STI) inhibitors  
2dre_C   3.81e-53   5-176   Kunitz (STI) inhibitors  
2dre_D   3.81e-53   5-176   Kunitz (STI) inhibitors  
2esu_A   2.02e-50   5-179   Kunitz (STI) inhibitors  
2et2_A   1.19e-50   5-179   Kunitz (STI) inhibitors  
2go2_A   2.26e-41   3-162   SCOPe  
2gzb_A   1.31e-38   4-163   SCOPe  
2gzb_B   1.31e-38   4-163   SCOPe  
2iwt_B   3.93e-66   13-186   Kunitz (STI) inhibitors  
2nm1_A   1.4e-82   225-434   Clostridium neurotoxins, C-terminal domain  
2np0_A   1.1e-81   1081-1290   Clostridium neurotoxins, C-terminal domain  
2nyy_A   8.63e-82   1079-1294   Clostridium neurotoxins, C-terminal domain  
2nz9_A   8.63e-82   1079-1294   Clostridium neurotoxins, C-terminal domain  
2nz9_B   8.63e-82   1079-1294   Clostridium neurotoxins, C-terminal domain  
2qn4_A   7.97e-72   26-194   Kunitz (STI) inhibitors  
2qn4_B   7.97e-72   26-194   Kunitz (STI) inhibitors  
2qyi_B   1.31e-51   2-176   Kunitz (STI) inhibitors  
2qyi_D   1.31e-51   2-176   Kunitz (STI) inhibitors  
2vu9_A   1.04e-82   227-442   Clostridium neurotoxins, C-terminal domain  
2vua_A   1.04e-82   227-442   Clostridium neurotoxins, C-terminal domain  
2vxr_A   5.29e-72   272-480   SCOPe  
2wbc_A   7.85e-51   2-176   Kunitz (STI) inhibitors  
3azv_A   2.01e-62   241-435   SCOPe  
3azv_B   2.01e-62   241-435   SCOPe  
3azw_A   2.01e-62   236-430   SCOPe  
3azw_B   2.01e-62   236-430   SCOPe  
3bta_A   8.63e-82   1079-1294   Clostridium neurotoxins, C-terminal domain  
3bx1_C   5.95e-68   5-178   Kunitz (STI) inhibitors  
3bx1_D   5.95e-68   5-178   Kunitz (STI) inhibitors  
3e8l_C   1.9e-26   9-185   SCOPe  
3ffz_A   1.2e-72   1055-1251   SCOPe  
3ffz_B   1.2e-72   1055-1251   SCOPe  
3fuo_A   8.74e-83   210-425   Clostridium neurotoxins, C-terminal domain  
3fuq_A   2.62e-73   233-390   SCOPe  
3hmy_A   6.19e-69   247-449   Clostridium neurotoxins, C-terminal domain  
3hn1_A   6.19e-69   247-449   Clostridium neurotoxins, C-terminal domain  
3i29_B   9.88e-52   5-180   Kunitz (STI) inhibitors  
3i2a_A   3.81e-52   9-179   Kunitz (STI) inhibitors  
3i2a_B   3.81e-52   9-179   Kunitz (STI) inhibitors  
3i2x_A   1.43e-51   5-180   Kunitz (STI) inhibitors  
3i2x_B   1.43e-51   5-180   Kunitz (STI) inhibitors  
3iir_A   2.98e-78   1-177   SCOPe  
3iir_B   2.98e-78   1-177   SCOPe  
3mpp_G   4.13e-72   223-431   SCOPe  
3n7j_A   6.19e-54   231-410   SCOPe  
3n7k_A   1.9e-63   216-426   SCOPe  
3n7k_B   1.9e-63   216-426   SCOPe  
3n7l_A   1.9e-62   230-424   SCOPe  
3n7m_A   9.02e-62   230-424   SCOPe  
3obr_A   7.22e-54   237-416   SCOPe  
3obt_A   7.22e-54   237-416   SCOPe  
3ogg_A   6.19e-54   230-409   SCOPe  
3pme_A   1.71e-50   230-409   SCOPe  
3qyd_A   1.9e-52   5-180   Kunitz (STI) inhibitors  
3qyd_B   1.9e-52   5-180   Kunitz (STI) inhibitors  
3qyd_C   1.9e-52   5-180   Kunitz (STI) inhibitors  
3r4s_A   5.4e-64   221-431   SCOPe  
3r4s_B   5.4e-64   221-431   SCOPe  
3r4u_A   5.4e-64   221-431   SCOPe  
3r4u_B   5.4e-64   221-431   SCOPe  
3rmx_A   5.05e-54   231-410   SCOPe  
3rmx_B   5.05e-54   231-410   SCOPe  
3rmx_C   5.05e-54   231-410   SCOPe  
3rmx_D   5.05e-54   231-410   SCOPe  
3rmy_A   5.62e-53   207-358,387-415   SCOPe  
3rmy_B   5.62e-53   207-358,387-415   SCOPe  
3rmy_C   5.62e-53   207-358,387-415   SCOPe  
3rmy_D   5.62e-53   207-358,387-415   SCOPe  
3rsj_A   2.5e-73   229-386   SCOPe  
3rsj_B   2.5e-73   229-386   SCOPe  
3rsj_C   2.5e-73   229-386   SCOPe  
3rsj_D   2.5e-73   229-386   SCOPe  
3s8j_A   6.66e-64   7-181   SCOPe  
3s8j_B   6.66e-64   7-181   SCOPe  
3s8k_A   6.66e-64   7-181   SCOPe  
3s8k_B   6.66e-64   7-181   SCOPe  
3tc2_A   4.4e-63   7-184   SCOPe  
3tc2_B   4.4e-63   7-184   SCOPe  
3tc2_C   4.4e-63   7-184   SCOPe  
3v0a_A   1.1e-81   1080-1295   Clostridium neurotoxins, C-terminal domain  
3v0b_A   1.1e-81   1080-1295   Clostridium neurotoxins, C-terminal domain  
3v0c_A   1.12e-81   1080-1295   Clostridium neurotoxins, C-terminal domain  
3veq_A   1.31e-51   2-176   Kunitz (STI) inhibitors  
3zc8_A   2.98e-78   1-177   SCOPe  
3zc9_A   2.98e-78   1-177   SCOPe  
4an6_A   1.43e-55   4-173   SCOPe  
4an6_B   1.43e-55   4-173   SCOPe  
4an7_B   8.69e-55   4-173   SCOPe  
4f83_A   1.71e-50   230-409   SCOPe  
4fvv_A   5.5e-62   216-423   SCOPe  
4fvv_B   5.5e-62   216-423   SCOPe  
4h9w_A   5.36e-48   5-179   Kunitz (STI) inhibitors  
4ha2_A   8.09e-49   5-178   Kunitz (STI) inhibitors  
4ha2_B   8.09e-49   5-178   Kunitz (STI) inhibitors  
4ihz_A   5.12e-52   2-163   SCOPe  
4ihz_B   5.12e-52   2-163   SCOPe  
4ii0_A   5.12e-52   2-163   SCOPe  
4ii0_B   5.12e-52   2-163   SCOPe  
4iqp_A   9.41e-82   210-425   Clostridium neurotoxins, C-terminal domain  
4isq_A   7.41e-62   238-430   SCOPe  
4isq_B   7.41e-62   238-430   SCOPe  
4isq_C   7.41e-62   238-430   SCOPe  
4isr_A   7.41e-62   238-430   SCOPe  
4isr_B   7.41e-62   238-430   SCOPe  
4isr_C   7.41e-62   238-430   SCOPe  
4j2k_A   1.43e-59   4-172   SCOPe  
4j2k_B   1.43e-59   4-172   SCOPe  
4j2y_A   1.43e-59   4-172   SCOPe  
4jra_A   1.02e-82   227-442   Clostridium neurotoxins, C-terminal domain  
4jra_B   1.02e-82   227-442   Clostridium neurotoxins, C-terminal domain  
4kbb_A   1.5e-82   250-459   Clostridium neurotoxins, C-terminal domain  
4kbb_B   1.5e-82   250-459   Clostridium neurotoxins, C-terminal domain  
4tlp_A   3.21e-47   3-174   Kunitz (STI) inhibitors  
4wbc_A   7.85e-51   2-176   Kunitz (STI) inhibitors  
4zkt_A   1.2e-72   1055-1251   SCOPe  
4zkt_C   1.2e-72   1055-1251   SCOPe  
4zkt_E   1.2e-72   1055-1251   SCOPe  
4zot_A   2.5e-41   6-165   SCOPe  
5dss_B   1.19e-59   5-181   SCOPe  
5dvh_A   8.57e-68   4-189   SCOPe  
5dzu_A   9.16e-66   7-186   SCOPe  
5dzu_B   9.16e-66   7-186   SCOPe  
5fnw_A   1.31e-63   7-185   SCOPe  
5fnx_A   1.31e-63   7-185   SCOPe  
5fzu_A   6.55e-64   7-185   SCOPe  
5fzy_A   6.55e-64   7-185   SCOPe  
5fzy_B   6.55e-64   7-185   SCOPe  
5fzz_A   6.43e-64   7-185   SCOPe  
5g00_A   6.43e-64   7-185   SCOPe  
5hpz_A   3.09e-60   2-174   Kunitz (STI) inhibitors  
5hpz_B   3.09e-60   2-174   Kunitz (STI) inhibitors  
5jlv_A   1.12e-82   212-427   Clostridium neurotoxins, C-terminal domain  
5jlv_B   1.12e-82   212-427   Clostridium neurotoxins, C-terminal domain  
5jmc_A   1.14e-82   213-428   Clostridium neurotoxins, C-terminal domain  
5jmc_C   1.14e-82   213-428   Clostridium neurotoxins, C-terminal domain  
5jmc_E   1.14e-82   213-428   Clostridium neurotoxins, C-terminal domain  
5jmc_G   1.14e-82   213-428   Clostridium neurotoxins, C-terminal domain  
5l21_A   1.12e-82   212-427   Clostridium neurotoxins, C-terminal domain  
5lr0_A   7.41e-62   238-430   SCOPe  
5lr0_B   7.41e-62   238-430   SCOPe  
5mk6_A   9.64e-83   217-432   Clostridium neurotoxins, C-terminal domain  
5mk7_A   9.64e-83   217-432   Clostridium neurotoxins, C-terminal domain  
5mk8_A   6.72e-79   245-429   Clostridium neurotoxins, C-terminal domain  
5mk8_B   6.72e-79   245-429   Clostridium neurotoxins, C-terminal domain  
5moy_A   2.79e-81   236-420   Clostridium neurotoxins, C-terminal domain  
5n0b_A   4.64e-68   1132-1334   Clostridium neurotoxins, C-terminal domain  
5n0c_A   4.64e-68   1132-1334   Clostridium neurotoxins, C-terminal domain  
5n0c_B   4.64e-68   1132-1334   Clostridium neurotoxins, C-terminal domain  
5tpb_A   1.04e-82   227-442   Clostridium neurotoxins, C-terminal domain  
5tpb_B   1.04e-82   227-442   Clostridium neurotoxins, C-terminal domain  
5tpc_A   8.74e-83   208-423   Clostridium neurotoxins, C-terminal domain  
5v38_A   6.72e-79   243-427   Clostridium neurotoxins, C-terminal domain  
5v38_B   6.72e-79   243-427   Clostridium neurotoxins, C-terminal domain  
5vid_A   1.33e-82   229-438   Clostridium neurotoxins, C-terminal domain  
5vid_B   1.33e-82   229-438   Clostridium neurotoxins, C-terminal domain  
5vid_C   1.33e-82   229-438   Clostridium neurotoxins, C-terminal domain  
5vid_D   1.33e-82   229-438   Clostridium neurotoxins, C-terminal domain  
5vid_E   1.33e-82   229-438   Clostridium neurotoxins, C-terminal domain  
5vmr_A   1.33e-82   229-438   Clostridium neurotoxins, C-terminal domain  
5vmr_B   1.33e-82   229-438   Clostridium neurotoxins, C-terminal domain  
5wvx_A   3.33e-50   2-180   SCOPe  
5wvx_B   3.33e-50   2-180   SCOPe  
5xoz_A   2.26e-75   13-188   SCOPe  
5xoz_B   2.26e-75   13-188   SCOPe  
5ycz_A   3.33e-50   2-180   SCOPe  
5ycz_B   3.33e-50   2-180   SCOPe  
5yh4_A   7.62e-119   5-179   SCOPe  
6es1_A   3.05e-81   253-437   Clostridium neurotoxins, C-terminal domain  
6f0o_A   1.8e-80   241-425   Clostridium neurotoxins, C-terminal domain  
6f0p_A   8.51e-82   217-432   Clostridium neurotoxins, C-terminal domain  
6giw_A   8.09e-53   5-176   Kunitz (STI) inhibitors  
6giw_B   8.09e-53   5-176   Kunitz (STI) inhibitors  
6giw_C   8.09e-53   5-176   Kunitz (STI) inhibitors  
6giw_D   8.09e-53   5-176   Kunitz (STI) inhibitors  
6gix_A   8.09e-53   5-176   Kunitz (STI) inhibitors  
6gix_B   8.09e-53   5-176   Kunitz (STI) inhibitors  
6gix_C   8.09e-53   5-176   Kunitz (STI) inhibitors  
6gix_D   8.09e-53   5-176   Kunitz (STI) inhibitors  

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View all assignments containing a STI-like domain in each group of genomes.

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Select to display   Genome       Domains   Proteins
No Yes ALL   5662 5662
No Yes Meloidogyne hapla   1 1
No Yes Dictyostelium purpureum   1 1
No Yes Pinus taeda Loblolly pine 4 4
No Yes Picea abies Norway spruce 1 1
No Yes Eucalyptus grandis v201 Rose gum 4 4
No Yes Theobroma cacao B97-61/B2 v1 Cacao 8 8
No Yes Gossypium raimondii v221   8 8
No Yes Citrus clementina v165   27 27
No Yes Citrus sinensis v154 Sweet orange 17 17
No Yes Thellungiella halophila v173   8 8
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 36 35
No Yes Capsella rubella v183   8 8
No Yes Arabidopsis lyrata Lyrate rockcress 9 9
No Yes Arabidopsis thaliana 10 Thale cress 7 7
No Yes Carica papaya Papaya 6 6
No Yes Medicago truncatula Barrel medic 50 50
No Yes Phaseolus vulgaris v186 French bean 17 17
No Yes Glycine max v109 Soybean 48 48
No Yes Cucumis sativus v122 Cucumber 5 5
No Yes Fragaria vesca Wild strawberry 5 5
No Yes Malus domestica v196 Apple 4 4
No Yes Prunus persica v139 Peach 3 3
No Yes Linum usitatissimum v200 Flax 21 21
No Yes Manihot esculenta v147 Cassava 5 5
No Yes Populus trichocarpa v156 Black cottonwood 31 31
No Yes Vitis vinifera Wine grape 6 6
No Yes Mimulus guttatus v140 Spotted monkey flower 1 1
No Yes Solanum lycopersicum v.2.3 Tomato 16 16
No Yes Solanum tuberosum Potato 36 36
No Yes Actinidia chinensis Hongyang   2 2
No Yes Aquilegia coerulea v195   4 4
No Yes Triticum urartu 22   3 3
No Yes Triticum aestivum 22 Bread wheat 5 5
No Yes Aegilops tauschii 22   12 10
No Yes Brachypodium distachyon Stiff brome 2 2
No Yes Oryza barthii 22 African wild rice 1 1
No Yes Oryza meridionalis 22   1 1
No Yes Oryza glumaepatula 22   1 1
No Yes Oryza glaberrima African rice 1 1
No Yes Oryza punctata 22   2 2
No Yes Oryza nivara 22   2 2
No Yes Oryza brachyantha 22 Malo sina 2 2
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 2 2
No Yes Oryza sativa v193 Rice 2 2
No Yes Panicum virgatum v202 Switchgrass 2 2
No Yes Setaria italica v164 Foxtail millet 2 2
No Yes Zea mays subsp. mays Maize 1 1
No Yes Zea mays v181 Maize 1 1
No Yes Sorghum bicolor Sorghum 1 1
No Yes Musa balbisiana Balbis banana 2 2
No Yes Musa acuminata 22 Wild Malaysian banana 2 2
No Yes Amborella trichopoda 22   2 2
No Yes Clostridium tetani E88   1 1
No Yes Clostridium botulinum A str. ATCC 3502   1 1
No Yes Capnocytophaga canimorsus Cc5   1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 8 8
No Yes Hordeum vulgare 22 Domesticated barley 2 2
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 1 1
No Yes Clostridium tetani genome 12124569   1 1
No Yes Clostridium botulinum H04402 065   1 1
No Yes Clostridium botulinum BKT015925   1 1
No Yes Clostridium botulinum F str. 230613   1 1
No Yes Clostridium botulinum F str. Langeland   1 1
No Yes Clostridium botulinum E3 str. Alaska E43   1 1
No Yes Clostridium botulinum B1 str. Okra   1 1
No Yes Clostridium botulinum Ba4 str. 657   2 2
No Yes Clostridium botulinum A2 str. Kyoto   1 1
No Yes Clostridium botulinum A3 str. Loch Maree   1 1
No Yes Clostridium botulinum A str. Hall   1 1
No Yes Clostridium botulinum A str. ATCC 19397   1 1
No Yes Bacillus toyonensis BCT-7112   1 1
No Yes Bacillus thuringiensis MC28   1 1
No Yes Bacillus thuringiensis YBT-1518   6 6
No Yes Lotus japonicus (Early assembly)   23 23
No Yes Malus x domestica (Duplicate) Apple 4 4
No Yes Ricinus communis (Early assembly) Castor bean 3 3
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   13 13
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 16 16
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 16 16
No Yes Arabidopsis thaliana 10 Thale cress 7 7
No Yes NCBI 2017_08 genome   1534 1527
No Yes STRING v9.0.5 (STRING)   67 67
No Yes Uniprot 2018_03 genome   2405 2387
No Yes Global Ocean Sampling Expedition (GOS)   1 1
No Yes NCBI plasmid sequences (Plasmids)   15 15
No Yes NCBI viral sequences (Viral)   1 1
No Yes PDB chains (SCOP 1.75) (PDB)   22 22
No Yes Protein Data Bank (all PDB sequenc)   226 226
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   510 510
No Yes UniProt viral sequences (Viral)   4 4

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.