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  Home > Genomes > Canis familiaris 69_3.1 > LDL receptor-like module domains


LDL receptor-like module superfamily domain assignments
in
Canis familiaris 69_3.1

Assignment details

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Canis familiaris 69_3.1 has 243 significant domains in 49 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSCAFP00000000045   0.0000000288   291-327   LDL receptor-like module  
ENSCAFP00000000266   0.000000000055   848-890   LDL receptor-like module  
  0.000000000144   3569-3609   LDL receptor-like module  
  0.00000000017   929-968   LDL receptor-like module  
  0.000000000236   3653-3698   LDL receptor-like module  
  0.000000000275   24-63   LDL receptor-like module  
  0.000000000314   3487-3527   LDL receptor-like module  
  0.000000000314   3611-3647   LDL receptor-like module  
  0.000000000393   1013-1050   LDL receptor-like module  
  0.000000000393   3369-3409   LDL receptor-like module  
  0.000000000406   2693-2730   LDL receptor-like module  
  0.000000000419   889-931   LDL receptor-like module  
  0.000000000563   974-1011   LDL receptor-like module  
  0.000000000798   3531-3570   LDL receptor-like module  
  0.00000000196   2560-2600   LDL receptor-like module  
  0.00000000196   2733-2767   LDL receptor-like module  
  0.0000000034   3448-3485   LDL receptor-like module  
  0.00000000589   1057-1097   LDL receptor-like module  
  0.00000000628   2815-2851   LDL receptor-like module  
  0.00000000851   2599-2639   LDL receptor-like module  
  0.00000000877   2853-2892   LDL receptor-like module  
  0.0000000107   3411-3449   LDL receptor-like module  
  0.0000000128   3331-3366   LDL receptor-like module  
  0.0000000183   2773-2807   LDL receptor-like module  
  0.0000000367   3740-3776   LDL receptor-like module  
  0.000000119   2524-2561   LDL receptor-like module  
  0.000000249   1143-1178   LDL receptor-like module  
  0.000000668   1106-1140   LDL receptor-like module  
  0.000000916   71-106   LDL receptor-like module  
  0.00000101   2658-2689   LDL receptor-like module  
  0.0000209   3695-3731   LDL receptor-like module  
ENSCAFP00000000573   0.00000000249   209-246   LDL receptor-like module  
ENSCAFP00000002806   0.00000000196   248-285   LDL receptor-like module  
  0.00000000314   559-596   LDL receptor-like module  
  0.00000000458   321-357   LDL receptor-like module  
  0.0000000122   283-321   LDL receptor-like module  
  0.0000000131   633-671   LDL receptor-like module  
  0.000000314   599-631   LDL receptor-like module  
ENSCAFP00000006758   0.000000000772   1553-1589   LDL receptor-like module  
  0.00000000249   2200-2238   LDL receptor-like module  
  0.00000000393   1401-1442   LDL receptor-like module  
  0.00000000851   1481-1519   LDL receptor-like module  
  0.0000000117   2423-2459   LDL receptor-like module  
  0.0000000236   1442-1476   LDL receptor-like module  
  0.0000000236   1365-1401   LDL receptor-like module  
  0.0000000275   2347-2386   LDL receptor-like module  
  0.0000694   1631-1657   LDL receptor-like module  
  0.000733   1593-1613   LDL receptor-like module  
ENSCAFP00000007913   0.0000617   453-485   LDL receptor-like module  
ENSCAFP00000008094   0.0000000000432   3688-3728   LDL receptor-like module  
  0.0000000000982   808-853   LDL receptor-like module  
  0.00000000017   772-809   LDL receptor-like module  
  0.000000000223   851-891   LDL receptor-like module  
  0.000000000301   2821-2862   LDL receptor-like module  
  0.000000000537   3562-3598   LDL receptor-like module  
  0.000000000785   3283-3327   LDL receptor-like module  
  0.000000000812   896-934   LDL receptor-like module  
  0.000000000851   3406-3442   LDL receptor-like module  
  0.000000000956   935-971   LDL receptor-like module  
  0.000000000995   2691-2726   LDL receptor-like module  
  0.00000000111   2476-2517   LDL receptor-like module  
  0.0000000013   3483-3518   LDL receptor-like module  
  0.00000000144   3604-3648   LDL receptor-like module  
  0.00000000209   3523-3560   LDL receptor-like module  
  0.00000000223   983-1019   LDL receptor-like module  
  0.00000000249   2733-2767   LDL receptor-like module  
  0.00000000367   2611-2647   LDL receptor-like module  
  0.00000000537   3246-3281   LDL receptor-like module  
  0.00000000641   3440-3480   LDL receptor-like module  
  0.00000000877   3366-3402   LDL receptor-like module  
  0.000000012   2520-2557   LDL receptor-like module  
  0.0000000144   3325-3362   LDL receptor-like module  
  0.0000000249   2650-2692   LDL receptor-like module  
  0.000000157   2570-2606   LDL receptor-like module  
  0.000000223   2441-2478   LDL receptor-like module  
  0.00000038   2770-2810   LDL receptor-like module  
  0.000000628   1065-1100   LDL receptor-like module  
  0.000000785   1025-1062   LDL receptor-like module  
  0.00000128   7-40   LDL receptor-like module  
  0.00000589   3650-3682   LDL receptor-like module  
ENSCAFP00000009735   0.00000000916   38-77   LDL receptor-like module  
ENSCAFP00000010199   0.000000000445   75-112   LDL receptor-like module  
  0.000000000576   35-72   LDL receptor-like module  
  0.000000000942   1-30   LDL receptor-like module  
ENSCAFP00000011049   0.000000000157   140-177   LDL receptor-like module  
  0.00000000183   186-226   LDL receptor-like module  
  0.000157   391-424   LDL receptor-like module  
  0.00172   342-389   LDL receptor-like module  
ENSCAFP00000012280   0.00000000000929   655-695   LDL receptor-like module  
  0.000000563   196-236   LDL receptor-like module  
ENSCAFP00000013217   0.0000000000314   312-352   LDL receptor-like module  
  0.000000000144   276-314   LDL receptor-like module  
  0.00000000038   191-231   LDL receptor-like module  
  0.000000000458   114-153   LDL receptor-like module  
  0.000000000576   357-393   LDL receptor-like module  
  0.0000000055   156-190   LDL receptor-like module  
  0.00000000654   235-273   LDL receptor-like module  
  0.00000157   74-116   LDL receptor-like module  
ENSCAFP00000013796   0.00000000563   303-340   LDL receptor-like module  
ENSCAFP00000014972   0.000000034   148-186   LDL receptor-like module  
ENSCAFP00000015254   0.0000000236   158-196   LDL receptor-like module  
ENSCAFP00000015316   0.0000000000123   452-489   LDL receptor-like module  
  0.0000000367   529-568   LDL receptor-like module  
  0.000196   488-524   LDL receptor-like module  
ENSCAFP00000016050   0.000000000733   1334-1372   LDL receptor-like module  
  0.0000000055   1255-1295   LDL receptor-like module  
  0.0000017   1296-1332   LDL receptor-like module  
ENSCAFP00000016482   0.0000000000275   400-437   LDL receptor-like module  
  0.000000000109   141-178   LDL receptor-like module  
  0.0000484   331-355   LDL receptor-like module  
  0.0038   357-399   LDL receptor-like module  
ENSCAFP00000016798   0.00000000524   275-311   LDL receptor-like module  
  0.0000000982   237-272   LDL receptor-like module  
ENSCAFP00000017344   0.0000000000353   1406-1443   LDL receptor-like module  
  0.0000000000707   1185-1223   LDL receptor-like module  
  0.0000000000759   1313-1349   LDL receptor-like module  
  0.000000000131   1142-1183   LDL receptor-like module  
  0.000000000524   1358-1393   LDL receptor-like module  
  0.00000000196   1066-1106   LDL receptor-like module  
  0.0000000144   1228-1261   LDL receptor-like module  
  0.0000000144   1460-1497   LDL receptor-like module  
  0.0000000589   1500-1539   LDL receptor-like module  
  0.000000115   1106-1145   LDL receptor-like module  
  0.00000301   1265-1300   LDL receptor-like module  
ENSCAFP00000017993   0.0000000000275   3691-3726   LDL receptor-like module  
  0.0000000000353   2708-2749   LDL receptor-like module  
  0.0000000000445   1237-1278   LDL receptor-like module  
  0.0000000000537   1078-1116   LDL receptor-like module  
  0.0000000000589   156-193   LDL receptor-like module  
  0.0000000000641   1119-1156   LDL receptor-like module  
  0.000000000144   2830-2869   LDL receptor-like module  
  0.000000000144   1038-1074   LDL receptor-like module  
  0.00000000034   2958-3000   LDL receptor-like module  
  0.000000000511   2999-3041   LDL receptor-like module  
  0.000000000969   3724-3764   LDL receptor-like module  
  0.0000000011   3042-3082   LDL receptor-like module  
  0.00000000117   3480-3517   LDL receptor-like module  
  0.00000000118   3768-3805   LDL receptor-like module  
  0.00000000131   3599-3639   LDL receptor-like module  
  0.00000000144   76-117   LDL receptor-like module  
  0.00000000144   190-230   LDL receptor-like module  
  0.0000000017   3519-3560   LDL receptor-like module  
  0.00000000223   3558-3599   LDL receptor-like module  
  0.00000000288   994-1032   LDL receptor-like module  
  0.00000000327   2875-2912   LDL receptor-like module  
  0.00000000353   3897-3933   LDL receptor-like module  
  0.00000000406   39-75   LDL receptor-like module  
  0.00000000458   2-37   LDL receptor-like module  
  0.00000000681   2671-2709   LDL receptor-like module  
  0.00000000798   3811-3847   LDL receptor-like module  
  0.00000000942   1201-1236   LDL receptor-like module  
  0.000000017   1157-1194   LDL receptor-like module  
  0.0000000223   2916-2960   LDL receptor-like module  
  0.0000000785   3854-3891   LDL receptor-like module  
  0.000000183   2793-2832   LDL receptor-like module  
  0.000000419   1282-1318   LDL receptor-like module  
  0.000000654   3652-3685   LDL receptor-like module  
  0.00000127   121-154   LDL receptor-like module  
  0.0000055   2753-2790   LDL receptor-like module  
ENSCAFP00000019674   0.000000000785   1325-1363   LDL receptor-like module  
  0.0000000013   1246-1286   LDL receptor-like module  
  0.0000000038   1287-1323   LDL receptor-like module  
ENSCAFP00000021788   0.0000000497   177-211   LDL receptor-like module  
ENSCAFP00000021850   0.000000000034   25-67   LDL receptor-like module  
ENSCAFP00000025632   0.00000982   67-107   LDL receptor-like module  
  0.000942   30-65   LDL receptor-like module  
ENSCAFP00000025841   0.0000000000183   141-183   LDL receptor-like module  
  0.0000000000249   103-144   LDL receptor-like module  
  0.000000000144   26-64   LDL receptor-like module  
  0.00000000017   198-234   LDL receptor-like module  
  0.000000000288   232-273   LDL receptor-like module  
  0.000000000445   62-104   LDL receptor-like module  
ENSCAFP00000027305   0.0000000000327   115-158   LDL receptor-like module  
  0.0000000000641   44-81   LDL receptor-like module  
ENSCAFP00000027446   0.0000000102   141-173   LDL receptor-like module  
ENSCAFP00000027458   0.0000458   78-119   LDL receptor-like module  
ENSCAFP00000027955   0.000000144   123-156   LDL receptor-like module  
ENSCAFP00000027972   0.000000429   101-133   LDL receptor-like module  
ENSCAFP00000028127   0.000000471   78-112   LDL receptor-like module  
  0.0000314   161-202   LDL receptor-like module  
  0.0000707   126-155   LDL receptor-like module  
ENSCAFP00000028264   0.000000000106   291-332   LDL receptor-like module  
  0.000000000432   169-204   LDL receptor-like module  
  0.000000000471   47-84   LDL receptor-like module  
  0.00000000055   88-130   LDL receptor-like module  
  0.00000000107   258-293   LDL receptor-like module  
  0.00000000196   208-243   LDL receptor-like module  
  0.00000000654   122-167   LDL receptor-like module  
  0.000000367   336-372   LDL receptor-like module  
ENSCAFP00000028669   0.000000956   184-223   LDL receptor-like module  
ENSCAFP00000028913   0.000000106   228-266   LDL receptor-like module  
  0.0000524   458-497   LDL receptor-like module  
ENSCAFP00000031662   0.000000445   492-523   LDL receptor-like module  
  0.0000236   457-490   LDL receptor-like module  
  0.0000319   528-564   LDL receptor-like module  
ENSCAFP00000033110   0.00000000000301   32-68   LDL receptor-like module  
  0.00000000000367   234-273   LDL receptor-like module  
  0.0000000000144   148-188   LDL receptor-like module  
  0.0000000000432   272-312   LDL receptor-like module  
  0.000000000471   70-108   LDL receptor-like module  
  0.00000000123   187-225   LDL receptor-like module  
  0.00000000249   107-149   LDL receptor-like module  
  0.0000000916   318-355   LDL receptor-like module  
ENSCAFP00000033639   0.0000000000327   3-36   LDL receptor-like module  
ENSCAFP00000036114   0.000000000772   283-320   LDL receptor-like module  
  0.0000000012   368-411   LDL receptor-like module  
  0.00000000209   325-361   LDL receptor-like module  
  0.0000000524   194-233   LDL receptor-like module  
ENSCAFP00000036398   0.00000000000903   84-125   LDL receptor-like module  
  0.000000000275   130-167   LDL receptor-like module  
  0.00000000183   173-213   LDL receptor-like module  
  0.00000000798   14-47   LDL receptor-like module  
  0.0000000458   54-86   LDL receptor-like module  
ENSCAFP00000036967   0.0000000759   14-48   LDL receptor-like module  
ENSCAFP00000037507   0.0000000123   296-332   LDL receptor-like module  
ENSCAFP00000038925   0.0000000236   64-102   LDL receptor-like module  
ENSCAFP00000041303   0.0000000000353   1406-1443   LDL receptor-like module  
  0.0000000000707   1185-1223   LDL receptor-like module  
  0.0000000000759   1313-1349   LDL receptor-like module  
  0.000000000131   1142-1183   LDL receptor-like module  
  0.000000000524   1358-1393   LDL receptor-like module  
  0.00000000196   1066-1106   LDL receptor-like module  
  0.0000000144   1228-1261   LDL receptor-like module  
  0.0000000144   1460-1497   LDL receptor-like module  
  0.0000000589   1500-1539   LDL receptor-like module  
  0.000000115   1106-1145   LDL receptor-like module  
  0.00000301   1265-1300   LDL receptor-like module  
ENSCAFP00000041927   0.0000000000353   1406-1443   LDL receptor-like module  
  0.0000000000707   1185-1223   LDL receptor-like module  
  0.0000000000759   1313-1349   LDL receptor-like module  
  0.000000000131   1142-1183   LDL receptor-like module  
  0.000000000524   1358-1393   LDL receptor-like module  
  0.00000000196   1066-1106   LDL receptor-like module  
  0.0000000144   1228-1261   LDL receptor-like module  
  0.0000000144   1460-1497   LDL receptor-like module  
  0.0000000589   1500-1539   LDL receptor-like module  
  0.000000115   1106-1145   LDL receptor-like module  
  0.00000301   1265-1300   LDL receptor-like module  
ENSCAFP00000042066   0.0000000000746   28-67   LDL receptor-like module  
ENSCAFP00000042227   0.0000000798   104-137   LDL receptor-like module  
ENSCAFP00000042558   0.00000000196   460-497   LDL receptor-like module  
  0.00000000209   496-533   LDL receptor-like module  
  0.00000000262   425-460   LDL receptor-like module  
  0.000000435   536-576   LDL receptor-like module  
ENSCAFP00000042981   0.000000000017   445-483   LDL receptor-like module  
  0.000000000602   160-195   LDL receptor-like module  
  0.000000137   406-444   LDL receptor-like module  
  0.000000262   207-249   LDL receptor-like module  
  0.000000733   369-406   LDL receptor-like module  
 
Weak hits:
ENSCAFP00000018907   0.00017   138-162   LDL receptor-like module  

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Select to display   Genome       Domains   Proteins
No Yes ALL   327216 327216
No Yes Homo sapiens 76_38 Human 548 151
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 216 47
No Yes Gorilla gorilla 76_3.1 Western gorilla 276 65
No Yes Pongo abelii 76_2 Sumatran orangutan 204 46
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 205 51
No Yes Papio anubis 76 Olive baboon 223 47
No Yes Macaca mulatta 76_1 Rhesus monkey 283 70
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 461 115
No Yes Otolemur garnettii 76_3 Small-eared galago 203 44
No Yes Microcebus murinus 76_1 Gray mouse lemur 178 42
No Yes Rattus norvegicus 76_5.0 Norway rat 208 49
No Yes Mus musculus 76_38 House mouse 402 97
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 182 41
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 224 46
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 238 49
No Yes Cavia porcellus 76_3 Domestic guinea pig 223 51
No Yes Oryctolagus cuniculus 76_2 Rabbit 225 50
No Yes Ochotona princeps 76 American pika 188 39
No Yes Tupaia belangeri 76 Northern tree shrew 156 37
No Yes Sus scrofa 76_10.2 Pig 167 58
No Yes Bos taurus 76_3.1 Cattle 211 52
No Yes Ovis aries 76_3.1 Sheep 271 58
No Yes Vicugna pacos 76_1 Alpaca 117 23
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 196 45
No Yes Mustela putorius furo 76_1.0 Domestic ferret 233 47
No Yes Ailuropoda melanoleuca 76_1 Giant panda 261 52
No Yes Canis familiaris 76_3.1 Dog 374 66
No Yes Felis catus 76_6.2 Domestic cat 246 53
No Yes Equus caballus 76_2 Horse 321 60
No Yes Myotis lucifugus 76_2.0 Little brown bat 187 45
No Yes Pteropus vampyrus 76_1 Large flying fox 203 43
No Yes Sorex araneus 76_1 European shrew 106 25
No Yes Erinaceus europaeus 76 Western European hedgehog 139 33
No Yes Procavia capensis 76_1 Cape rock hyrax 174 36
No Yes Loxodonta africana 76_3 African savanna elephant 236 56
No Yes Echinops telfairi 76 Small Madagascar hedgehog 144 32
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 268 57
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 117 25
No Yes Macropus eugenii 76_1.0 Tammar wallaby 183 39
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 228 61
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 214 49
No Yes Ornithorhynchus anatinus 76_5 Platypus 206 53
No Yes Saccoglossus kowalevskii v3.0   1261 297
No Yes Petromyzon marinus 76_7.0 Sea lamprey 203 25
No Yes Meleagris gallopavo 76_2 Turkey 201 50
No Yes Gallus gallus 76_4 Chicken 222 45
No Yes Anas platyrhynchos 76_1.0 Mallard 185 45
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 193 44
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 218 43
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 212 59
No Yes Anolis carolinensis 76_2.0 Green anole 230 49
No Yes Xenopus laevis African clawed frog 176 45
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 231 62
No Yes Latimeria chalumnae 76_1 Coelacanth 249 52
No Yes Lepisosteus oculatus 76 Spotted gar 373 70
No Yes Gadus morhua 76_1 Atlantic cod 251 50
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 445 69
No Yes Takifugu rubripes 76_4 Torafugu 1153 201
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 365 68
No Yes Oryzias latipes 76_1 Japanese medaka 304 56
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 308 56
No Yes Poecilia formosa 76 Amazon molly 313 57
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 440 81
No Yes Astyanax mexicanus 76 Mexican tetra 293 73
No Yes Danio rerio 76_9 Zebrafish 537 103
No Yes Oikopleura dioica   54 30
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 454 80
No Yes Ciona intestinalis 76 Vase tunicate 156 67
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 601 193
No Yes Adineta vaga   274 125
No Yes Octopus bimaculoides 280   398 81
No Yes Crassostrea gigas 22 Pacific oyster 237 86
No Yes Lottia gigantea Owl limpet 212 60
No Yes Helobdella robusta   208 57
No Yes Capitella sp. I   359 115
No Yes Danaus plexippus OGS1.0 Monarch butterfly 163 38
No Yes Heliconius melpomene Postman butterfly 145 29
No Yes Bombyx mori Domestic silkworm 97 41
No Yes Nasonia vitripennis Jewel wasp 89 27
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 323 64
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 128 38
No Yes Linepithema humile v1.1 Argentine ant 122 43
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 116 43
No Yes Solenopsis invicta v.2.2.3 Red fire ant 98 38
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 126 36
No Yes Atta cephalotes v1.1   125 40
No Yes Camponotus floridanus v3.3 Florida carpenter ant 131 35
No Yes Lucilia cuprina Australian sheep blowfly 189 33
No Yes Drosophila grimshawi 1.3   174 37
No Yes Drosophila willistoni 1.3   172 39
No Yes Drosophila pseudoobscura 2.13   181 42
No Yes Drosophila persimilis 1.3   170 43
No Yes Drosophila suzukii   171 33
No Yes Drosophila yakuba 1.3   172 38
No Yes Drosophila simulans 1.3   99 33
No Yes Drosophila sechellia 1.3   155 40
No Yes Drosophila melanogaster 76_5 Fruit fly 643 97
No Yes Drosophila erecta 1.3   173 37
No Yes Drosophila ananassae 1.3   157 32
No Yes Drosophila virilis 1.2   158 36
No Yes Drosophila mojavensis 1.3   171 37
No Yes Megaselia scalaris 22   44 19
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 166 35
No Yes Culex pipiens quinquefasciatus Southern house mosquito 107 38
No Yes Anopheles darlingi 22 American malaria mosquito 118 28
No Yes Anopheles gambiae 49_3j African malaria mosquito 161 32
No Yes Tribolium castaneum 3.0 Red flour beetle 179 43
No Yes Pediculus humanus corporis (Early assembly) Human body louse 171 34
No Yes Acyrthosiphon pisum Pea aphid 150 36
No Yes Rhodnius prolixus 22   125 30
No Yes Daphnia pulex Common water flea 221 61
No Yes Strigamia maritima 22   202 47
No Yes Sarcoptes scabiei   128 42
No Yes Tetranychus urticae Two-spotted spider mite 193 71
No Yes Ixodes scapularis (Preliminary) Black-legged tick 139 44
No Yes Pristionchus pacificus   91 28
No Yes Meloidogyne incognita Southern root-knot nematode 95 18
No Yes Meloidogyne hapla   27 13
No Yes Onchocerca volvulus 22   73 17
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 129 27
No Yes Caenorhabditis japonica   103 24
No Yes Caenorhabditis brenneri   168 39
No Yes Caenorhabditis remanei   123 29
No Yes Caenorhabditis elegans 76_235 Roundworm 177 44
No Yes Caenorhabditis briggsae 2   118 26
No Yes Trichinella spiralis 22   119 32
No Yes Hymenolepis microstoma   45 11
No Yes Echinococcus multilocularis   39 13
No Yes Echinococcus granulosus   38 12
No Yes Taenia solium Pork tapeworm 35 17
No Yes Schistosoma mansoni   18 9
No Yes Mnemiopsis leidyi Sea walnut 413 204
No Yes Thelohanellus kitauei   270 126
No Yes Acropora digitifera v1.0   105 35
No Yes Nematostella vectensis 1.0 Starlet sea anemone 144 35
No Yes Hydra vulgaris   77 17
No Yes Amphimedon queenslandica   13 3
No Yes Trichoplax adhaerens   103 18
No Yes Proterospongia sp. ATCC 50818   2 2
No Yes Monosiga brevicollis   17 17
No Yes Sphaeroforma arctica JP610   1 1
No Yes Capsaspora owczarzaki ATCC 30864   2 2
No Yes Rhizopus oryzae RA 99-880   1 1
No Yes Rhizomucor miehei CAU432   1 1
No Yes Sphaerobolus stellatus v1.0   1 1
No Yes Tulasnella calospora AL13/4D v1.0   1 1
No Yes Botrytis cinerea B05.10   1 1
No Yes Sclerotinia sclerotiorum   1 1
No Yes Zasmidium cellare ATCC 36951 v1.0   1 1
No Yes Paracoccidioides brasiliensis Pb18   1 1
No Yes Histoplasma capsulatum class NAmI strain WU24   1 1
No Yes Penicillium chrysogenum Wisconsin 54-1255   1 1
No Yes Penicillium chrysogenum v1.0   1 1
No Yes Aspergillus acidus v1.0   1 1
No Yes Aspergillus brasiliensis v1.0   1 1
No Yes Aspergillus terreus NIH2624   1 1
No Yes Aspergillus tubingensis v1.0   1 1
No Yes Aspergillus niger 22   1 1
No Yes Aspergillus niger ATCC 1015   1 1
No Yes Tuber melanosporum Mel28 22   1 1
No Yes Tuber melanosporum Vittad Perigord truffle 1 1
No Yes Saccharomyces paradoxus MIT   1 1
No Yes Schizosaccharomyces japonicus yFS275   1 1
No Yes Catenaria anguillulae PL171 v1.0   1 1
No Yes Allomyces macrogynus ATCC 38327   1 1
No Yes Dictyostelium purpureum   1 1
No Yes Gossypium raimondii v221   2 2
No Yes Citrus clementina v165   2 2
No Yes Citrus sinensis v154 Sweet orange 2 2
No Yes Manihot esculenta v147 Cassava 1 1
No Yes Populus trichocarpa v156 Black cottonwood 1 1
No Yes Solanum lycopersicum v.2.3 Tomato 1 1
No Yes Solanum tuberosum Potato 3 3
No Yes Triticum aestivum 22 Bread wheat 5 5
No Yes Brachypodium distachyon Stiff brome 3 3
No Yes Panicum virgatum v202 Switchgrass 1 1
No Yes Musa balbisiana Balbis banana 1 1
No Yes Musa acuminata 22 Wild Malaysian banana 2 2
No Yes Coccomyxa subellipsoidea sp. C-169 v2   1 1
No Yes Volvox carteri f. nagariensis   1 1
No Yes Volvox carteri v199   1 1
No Yes Chlamydomonas reinhardtii 4.0   1 1
No Yes Thecamonas trahens ATCC 50062   1 1
No Yes Bigelowiella natans CCMP2755 22   2 2
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   1 1
No Yes Trypanosoma vivax   1 1
No Yes Trypanosoma congolense 2.4   1 1
No Yes Trypanosoma brucei gambiense v4.1   1 1
No Yes Trypanosoma brucei TREU927 v4.1   1 1
No Yes Pythium iwayamai DAOM BR242034 22   1 1
No Yes Pythium vexans DAOM BR484 22   1 1
No Yes Phytophthora sojae 1.1   1 1
No Yes Perkinsus marinus ATCC 50983   2 2
No Yes Naegleria gruberi   1 1
No Yes Trichomonas vaginalis   8 6
No Yes Emiliania huxleyi CCMP1516   1 1
No Yes Haliangium ochraceum DSM 14365   4 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 272 61
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 446 71
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 209 34
No Yes Ascaris suum Victoria/Ghent Pig roundworm 106 28
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 150 35
No Yes Cryptococcus neoformans var. grubii H99   1 1
No Yes Cryptococcus neoformans B-3501A   1 1
No Yes Cryptococcus neoformans JEC21   1 1
No Yes Paracoccidioides brasiliensis Pb03   1 1
No Yes Histoplasma capsulatum H88   1 1
No Yes Histoplasma capsulatum G186AR   1 1
No Yes Batrachochytrium dendrobatidis JAM81   1 1
No Yes Trypanosoma brucei Lister 427 v4.1   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 505 148
No Yes Homo sapiens (NCBI version) Human 303 75
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 220 45
No Yes Heliconius numata (Incomplete)   12 9
No Yes Loa loa v3.3 (Request) Eye worm 74 20
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 63 26
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 55 14
No Yes Moniliophthora perniciosa FA553 (Genome survey)   1 1
No Yes Picea sitchensis (Incomplete) Sitka spruce 1 1
No Yes Ricinus communis (Early assembly) Castor bean 1 1
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   3 3
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 1 1
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 1 1
No Yes Homo sapiens 69_37 Human 219 45
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 212 44
No Yes Gorilla gorilla 69_3.1 Western gorilla 191 46
No Yes Pongo abelii 69_2 Sumatran orangutan 201 44
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 188 47
No Yes Macaca mulatta 69_1 Rhesus monkey 192 45
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 216 49
No Yes Otolemur garnettii 69_3 Small-eared galago 202 43
No Yes Microcebus murinus 69_1 Gray mouse lemur 178 42
No Yes Rattus norvegicus 69_3.4 Norway rat 203 51
No Yes Mus musculus 69_38 House mouse 222 47
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 182 41
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 193 41
No Yes Cavia porcellus 69_3 Domestic guinea pig 199 49
No Yes Oryctolagus cuniculus 69_2 Rabbit 202 46
No Yes Ochotona princeps 69 American pika 188 39
No Yes Tupaia belangeri 69 Northern tree shrew 156 37
No Yes Sus scrofa 69_10.2 Pig 143 48
No Yes Bos taurus 69_3.1 Cattle 205 47
No Yes Vicugna pacos 69_1 Alpaca 117 23
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 196 45
No Yes Mustela putorius furo 69_1.0 Domestic ferret 230 46
No Yes Ailuropoda melanoleuca 69_1 Giant panda 224 48
No Yes Canis familiaris 69_3.1 Dog 243 49
No Yes Felis catus 69 Domestic cat 141 37
No Yes Equus caballus 69_2 Horse 223 52
No Yes Myotis lucifugus 69_2.0 Little brown bat 183 43
No Yes Pteropus vampyrus 69_1 Large flying fox 203 43
No Yes Sorex araneus 69_1 European shrew 106 25
No Yes Erinaceus europaeus 69 Western European hedgehog 139 33
No Yes Procavia capensis 69_1 Cape rock hyrax 174 36
No Yes Loxodonta africana 69_3 African savanna elephant 187 43
No Yes Echinops telfairi 69 Small Madagascar hedgehog 144 32
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 144 28
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 117 25
No Yes Macropus eugenii 69_1.0 Tammar wallaby 183 39
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 181 44
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 212 48
No Yes Ornithorhynchus anatinus 69_5 Platypus 175 47
No Yes Petromyzon marinus 69_7.0 Sea lamprey 168 21
No Yes Meleagris gallopavo 69_2 Turkey 169 44
No Yes Gallus gallus 69_2 Chicken 171 37
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 187 40
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 175 46
No Yes Anolis carolinensis 69_2.0 Green anole 223 47
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 220 53
No Yes Latimeria chalumnae 69_1 Coelacanth 192 43
No Yes Gadus morhua 69_1 Atlantic cod 237 47
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 307 53
No Yes Takifugu rubripes 69_4 Torafugu 272 48
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 314 55
No Yes Oryzias latipes 69_1 Japanese medaka 275 44
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 308 56
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 337 58
No Yes Danio rerio 69_9 Zebrafish 342 61
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 155 51
No Yes Ciona intestinalis 69 Vase tunicate 143 62
No Yes Drosophila melanogaster 69_5 Fruit fly 168 35
No Yes Caenorhabditis elegans 69_215 Roundworm 126 26
No Yes 1_Upper_euphotic (meta-genome)   3 2
No Yes 3_Below_base_of_euphotic (meta-genome)   1 1
No Yes 5_Below_upper_mesopelagic (meta-genome)   1 1
No Yes 6_Upper_euphotic (meta-genome)   2 1
No Yes 7_Oxygen_minimum_layer (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   1 1
No Yes NCBI 2017_08 genome   143684 28917
No Yes Protozoadb 2010_08 (Protozoadb)   18 14
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   8 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   2 2
No Yes STRING v9.0.5 (STRING)   10524 2529
No Yes Uniprot 2018_03 genome   103788 23713
No Yes Global Ocean Sampling Expedition (GOS)   193 113
No Yes PDB chains (SCOP 1.75) (PDB)   26 18
No Yes Protein Data Bank (all PDB sequenc)   207 160
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   244 244
No Yes TargetDB (Targets)   96 34

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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