SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.


Granulin repeat superfamily domain assignments
in
Callithrix jacchus 76_3.2.1

Assignment details

(show help)


Callithrix jacchus 76_3.2.1 has 30 significant domains in 6 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSCJAP00000018221   0.00000000458   97-125   Granulin repeat  
  0.0000000576   333-361   Granulin repeat  
  0.000000262   178-205   Granulin repeat  
  0.000000562   256-284   Granulin repeat  
ENSCJAP00000018245   0.0000000432   121-149   Granulin repeat  
  0.0000000628   357-385   Granulin repeat  
  0.000000275   202-229   Granulin repeat  
  0.000000615   280-308   Granulin repeat  
  0.0523   61-87   Granulin repeat  
ENSCJAP00000018252   0.00000000497   277-305   Granulin repeat  
  0.0000000196   121-150   Granulin repeat  
  0.0000000863   203-232   Granulin repeat  
  0.0000000903   358-386   Granulin repeat  
  0.0536   61-87   Granulin repeat  
ENSCJAP00000018253   0.00000000746   279-307   Granulin repeat  
  0.0000000262   123-152   Granulin repeat  
  0.0000000929   515-543   Granulin repeat  
  0.000000131   205-234   Granulin repeat  
  0.000000419   360-387   Granulin repeat  
  0.000000916   438-466   Granulin repeat  
  0.0785   61-87   Granulin repeat  
ENSCJAP00000018269   0.00000000746   281-309   Granulin repeat  
  0.0000000262   125-154   Granulin repeat  
  0.0000000929   517-545   Granulin repeat  
  0.000000131   207-236   Granulin repeat  
  0.000000419   362-389   Granulin repeat  
  0.000000916   440-468   Granulin repeat  
  0.0785   61-87   Granulin repeat  
ENSCJAP00000018294   0.00000000746   277-305   Granulin repeat  
  0.0000000249   121-150   Granulin repeat  
  0.0000000916   513-541   Granulin repeat  
  0.000000131   203-232   Granulin repeat  
  0.000000419   358-385   Granulin repeat  
  0.000000916   436-464   Granulin repeat  
  0.0785   61-87   Granulin repeat  
 
Weak hits:
ENSCJAP00000035391   0.0458   25-42   Granulin repeat  

Jump to [ Top of page · Assignment details · Add assignments from individual genomes ]


Add assignments from groups of genomes

View all assignments containing a Granulin repeat domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]


Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   10797 10797
No Yes Homo sapiens 76_38 Human 21 9
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 6 1
No Yes Gorilla gorilla 76_3.1 Western gorilla 6 1
No Yes Pongo abelii 76_2 Sumatran orangutan 5 1
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 6 1
No Yes Papio anubis 76 Olive baboon 6 1
No Yes Macaca mulatta 76_1 Rhesus monkey 7 2
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 30 6
No Yes Otolemur garnettii 76_3 Small-eared galago 6 1
No Yes Microcebus murinus 76_1 Gray mouse lemur 5 1
No Yes Rattus norvegicus 76_5.0 Norway rat 11 2
No Yes Mus musculus 76_38 House mouse 13 4
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 5 1
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 6 1
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 6 1
No Yes Cavia porcellus 76_3 Domestic guinea pig 6 1
No Yes Oryctolagus cuniculus 76_2 Rabbit 12 2
No Yes Ochotona princeps 76 American pika 6 1
No Yes Tupaia belangeri 76 Northern tree shrew 5 1
No Yes Sus scrofa 76_10.2 Pig 6 1
No Yes Bos taurus 76_3.1 Cattle 6 1
No Yes Ovis aries 76_3.1 Sheep 6 1
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 6 1
No Yes Mustela putorius furo 76_1.0 Domestic ferret 6 1
No Yes Ailuropoda melanoleuca 76_1 Giant panda 5 1
No Yes Canis familiaris 76_3.1 Dog 5 1
No Yes Felis catus 76_6.2 Domestic cat 6 1
No Yes Equus caballus 76_2 Horse 12 2
No Yes Myotis lucifugus 76_2.0 Little brown bat 6 1
No Yes Pteropus vampyrus 76_1 Large flying fox 6 1
No Yes Erinaceus europaeus 76 Western European hedgehog 3 1
No Yes Procavia capensis 76_1 Cape rock hyrax 6 1
No Yes Loxodonta africana 76_3 African savanna elephant 6 1
No Yes Echinops telfairi 76 Small Madagascar hedgehog 3 1
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 12 2
No Yes Macropus eugenii 76_1.0 Tammar wallaby 5 1
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 6 1
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 6 1
No Yes Ornithorhynchus anatinus 76_5 Platypus 9 3
No Yes Saccoglossus kowalevskii v3.0   9 2
No Yes Petromyzon marinus 76_7.0 Sea lamprey 9 1
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 4 1
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 3 1
No Yes Anolis carolinensis 76_2.0 Green anole 6 1
No Yes Xenopus laevis African clawed frog 44 6
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 16 2
No Yes Latimeria chalumnae 76_1 Coelacanth 9 2
No Yes Lepisosteus oculatus 76 Spotted gar 8 3
No Yes Gadus morhua 76_1 Atlantic cod 10 4
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 14 5
No Yes Takifugu rubripes 76_4 Torafugu 28 5
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 29 5
No Yes Oryzias latipes 76_1 Japanese medaka 16 3
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 18 3
No Yes Poecilia formosa 76 Amazon molly 18 3
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 20 5
No Yes Astyanax mexicanus 76 Mexican tetra 27 5
No Yes Danio rerio 76_9 Zebrafish 50 11
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 5 3
No Yes Ciona intestinalis 76 Vase tunicate 5 2
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 26 1
No Yes Adineta vaga   17 7
No Yes Octopus bimaculoides 280   5 2
No Yes Crassostrea gigas 22 Pacific oyster 11 1
No Yes Lottia gigantea Owl limpet 10 3
No Yes Helobdella robusta   3 1
No Yes Capitella sp. I   12 3
No Yes Daphnia pulex Common water flea 1 1
No Yes Strigamia maritima 22   3 2
No Yes Ixodes scapularis (Preliminary) Black-legged tick 17 4
No Yes Pristionchus pacificus   4 4
No Yes Meloidogyne incognita Southern root-knot nematode 2 2
No Yes Meloidogyne hapla   1 1
No Yes Onchocerca volvulus 22   1 1
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 1 1
No Yes Caenorhabditis japonica   2 1
No Yes Caenorhabditis brenneri   2 1
No Yes Caenorhabditis remanei   2 1
No Yes Caenorhabditis elegans 76_235 Roundworm 4 2
No Yes Caenorhabditis briggsae 2   2 1
No Yes Trichinella spiralis 22   2 1
No Yes Hymenolepis microstoma   2 2
No Yes Taenia solium Pork tapeworm 1 1
No Yes Schistosoma mansoni   11 3
No Yes Mnemiopsis leidyi Sea walnut 3 1
No Yes Nematostella vectensis 1.0 Starlet sea anemone 9 2
No Yes Hydra vulgaris   9 2
No Yes Amphimedon queenslandica   6 1
No Yes Trichoplax adhaerens   6 1
No Yes Proterospongia sp. ATCC 50818   1 1
No Yes Monosiga brevicollis   3 1
No Yes Capsaspora owczarzaki ATCC 30864   2 1
No Yes Dictyostelium discoideum   1 1
No Yes Dictyostelium purpureum   1 1
No Yes Selaginella moellendorffii   4 4
No Yes Pinus taeda Loblolly pine 7 7
No Yes Picea abies Norway spruce 6 6
No Yes Eucalyptus grandis v201 Rose gum 8 8
No Yes Theobroma cacao B97-61/B2 v1 Cacao 4 4
No Yes Gossypium raimondii v221   18 18
No Yes Citrus clementina v165   6 6
No Yes Citrus sinensis v154 Sweet orange 15 15
No Yes Thellungiella halophila v173   4 4
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 8 8
No Yes Capsella rubella v183   4 4
No Yes Arabidopsis lyrata Lyrate rockcress 4 4
No Yes Arabidopsis thaliana 10 Thale cress 4 4
No Yes Carica papaya Papaya 3 3
No Yes Medicago truncatula Barrel medic 8 8
No Yes Phaseolus vulgaris v186 French bean 4 4
No Yes Glycine max v109 Soybean 5 5
No Yes Cucumis sativus v122 Cucumber 3 3
No Yes Fragaria vesca Wild strawberry 4 4
No Yes Malus domestica v196 Apple 7 7
No Yes Prunus persica v139 Peach 4 4
No Yes Linum usitatissimum v200 Flax 7 7
No Yes Manihot esculenta v147 Cassava 6 6
No Yes Populus trichocarpa v156 Black cottonwood 7 7
No Yes Vitis vinifera Wine grape 4 4
No Yes Mimulus guttatus v140 Spotted monkey flower 4 4
No Yes Solanum lycopersicum v.2.3 Tomato 6 6
No Yes Solanum tuberosum Potato 10 10
No Yes Actinidia chinensis Hongyang   6 6
No Yes Aquilegia coerulea v195   8 8
No Yes Triticum urartu 22   5 5
No Yes Triticum aestivum 22 Bread wheat 14 14
No Yes Aegilops tauschii 22   6 6
No Yes Brachypodium distachyon Stiff brome 3 3
No Yes Oryza barthii 22 African wild rice 4 4
No Yes Oryza meridionalis 22   4 4
No Yes Oryza glumaepatula 22   4 4
No Yes Oryza glaberrima African rice 4 4
No Yes Oryza punctata 22   4 4
No Yes Oryza nivara 22   5 5
No Yes Oryza brachyantha 22 Malo sina 4 4
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 5 5
No Yes Oryza sativa v193 Rice 5 5
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 6 6
No Yes Panicum virgatum v202 Switchgrass 8 8
No Yes Setaria italica v164 Foxtail millet 5 5
No Yes Zea mays subsp. mays Maize 8 8
No Yes Zea mays v181 Maize 10 10
No Yes Sorghum bicolor Sorghum 3 3
No Yes Musa balbisiana Balbis banana 8 8
No Yes Musa acuminata 22 Wild Malaysian banana 9 9
No Yes Amborella trichopoda 22   3 3
No Yes Physcomitrella patens   5 5
No Yes Coccomyxa subellipsoidea sp. C-169 v2   1 1
No Yes Asterochloris sp. Cgr/DA1pho v1.0   1 1
No Yes Chlorella variabilis sp. NC64A   1 1
No Yes Chlorella vulgaris   1 1
No Yes Volvox carteri f. nagariensis   1 1
No Yes Volvox carteri v199   1 1
No Yes Chlamydomonas reinhardtii 4.0   1 1
No Yes Cyanophora paradoxa   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 46 4
No Yes Ascaris suum Victoria/Ghent Pig roundworm 2 1
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 4 2
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 4 4
No Yes Hordeum vulgare 22 Domesticated barley 2 2
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 4 4
No Yes Homo sapiens 75_37 (old version GRC) Human 21 9
No Yes Homo sapiens (NCBI version) Human 6 1
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 6 1
No Yes Loa loa v3.3 (Request) Eye worm 2 2
No Yes Picea sitchensis (Incomplete) Sitka spruce 1 1
No Yes Lotus japonicus (Early assembly)   5 5
No Yes Malus x domestica (Duplicate) Apple 7 7
No Yes Ricinus communis (Early assembly) Castor bean 5 5
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   11 11
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 6 6
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 6 6
No Yes Homo sapiens 69_37 Human 6 1
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 6 1
No Yes Gorilla gorilla 69_3.1 Western gorilla 6 1
No Yes Pongo abelii 69_2 Sumatran orangutan 5 1
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 6 1
No Yes Macaca mulatta 69_1 Rhesus monkey 4 1
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 6 1
No Yes Otolemur garnettii 69_3 Small-eared galago 6 1
No Yes Microcebus murinus 69_1 Gray mouse lemur 5 1
No Yes Rattus norvegicus 69_3.4 Norway rat 6 1
No Yes Mus musculus 69_38 House mouse 6 1
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 5 1
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 6 1
No Yes Cavia porcellus 69_3 Domestic guinea pig 6 1
No Yes Oryctolagus cuniculus 69_2 Rabbit 6 1
No Yes Ochotona princeps 69 American pika 6 1
No Yes Tupaia belangeri 69 Northern tree shrew 5 1
No Yes Sus scrofa 69_10.2 Pig 6 1
No Yes Bos taurus 69_3.1 Cattle 6 1
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 6 1
No Yes Mustela putorius furo 69_1.0 Domestic ferret 6 1
No Yes Ailuropoda melanoleuca 69_1 Giant panda 5 1
No Yes Canis familiaris 69_3.1 Dog 5 1
No Yes Felis catus 69 Domestic cat 6 2
No Yes Equus caballus 69_2 Horse 6 1
No Yes Myotis lucifugus 69_2.0 Little brown bat 6 1
No Yes Pteropus vampyrus 69_1 Large flying fox 6 1
No Yes Erinaceus europaeus 69 Western European hedgehog 3 1
No Yes Procavia capensis 69_1 Cape rock hyrax 6 1
No Yes Loxodonta africana 69_3 African savanna elephant 6 1
No Yes Echinops telfairi 69 Small Madagascar hedgehog 3 1
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 3 1
No Yes Macropus eugenii 69_1.0 Tammar wallaby 5 1
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 6 1
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 6 1
No Yes Ornithorhynchus anatinus 69_5 Platypus 5 2
No Yes Petromyzon marinus 69_7.0 Sea lamprey 9 1
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 4 1
No Yes Anolis carolinensis 69_2.0 Green anole 6 1
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 9 1
No Yes Latimeria chalumnae 69_1 Coelacanth 9 2
No Yes Gadus morhua 69_1 Atlantic cod 10 4
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 12 4
No Yes Takifugu rubripes 69_4 Torafugu 9 2
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 17 3
No Yes Oryzias latipes 69_1 Japanese medaka 16 3
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 18 3
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 18 3
No Yes Danio rerio 69_9 Zebrafish 23 4
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 5 3
No Yes Ciona intestinalis 69 Vase tunicate 5 2
No Yes Caenorhabditis elegans 69_215 Roundworm 2 1
No Yes Arabidopsis thaliana 10 Thale cress 4 4
No Yes NCBI 2017_08 genome   4592 1166
No Yes STRING v9.0.5 (STRING)   347 99
No Yes Uniprot 2018_03 genome   3311 1382
No Yes PDB chains (SCOP 1.75) (PDB)   4 4
No Yes Protein Data Bank (all PDB sequenc)   10 10
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   13 13
No Yes TargetDB (Targets)   7 2

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]