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Cystine-knot cytokines superfamily domain assignments
in
Tetraodon nigroviridis 76_8

Assignment details

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Tetraodon nigroviridis 76_8 has 81 significant domains in 81 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSTNIP00000000320   4.14e-17   10-107   Transforming growth factor (TGF)-beta  
ENSTNIP00000000458   2.58e-34   299-408   Transforming growth factor (TGF)-beta  
ENSTNIP00000000562   1.38e-34   234-343   Transforming growth factor (TGF)-beta  
ENSTNIP00000000587   2.06e-20   378-484   Transforming growth factor (TGF)-beta  
ENSTNIP00000001728   5.52e-30   88-177   Platelet-derived growth factor-like  
ENSTNIP00000002789   1.08e-41   57-261   Noggin  
ENSTNIP00000003509   9.78e-26   66-157   Platelet-derived growth factor-like  
ENSTNIP00000003530   1.53e-23   4-89   Interleukin 17F, IL-17F  
ENSTNIP00000003636   9.03e-28   54-149   Platelet-derived growth factor-like  
ENSTNIP00000004024   1.89e-17   66-164   Transforming growth factor (TGF)-beta  
ENSTNIP00000004329   3.28e-20   255-316   Transforming growth factor (TGF)-beta  
ENSTNIP00000004913   1.81e-46   146-262   Neurotrophin  
ENSTNIP00000005396   5.59e-33   245-342   Transforming growth factor (TGF)-beta  
ENSTNIP00000006486   1.1e-26   72-162   Platelet-derived growth factor-like  
ENSTNIP00000006862   2.19e-37   216-323   Transforming growth factor (TGF)-beta  
ENSTNIP00000006887   2.91e-43   150-267   Neurotrophin  
ENSTNIP00000007357   9.03e-34   306-415   Transforming growth factor (TGF)-beta  
ENSTNIP00000007358   3.48e-34   319-427   Transforming growth factor (TGF)-beta  
ENSTNIP00000007681   4.65e-22   67-127   Platelet-derived growth factor-like  
ENSTNIP00000007923   1.29e-19   195-304   Platelet-derived growth factor-like  
ENSTNIP00000007924   1.26e-19   196-305   Platelet-derived growth factor-like  
ENSTNIP00000008241   9.89e-43   271-378   Transforming growth factor (TGF)-beta  
ENSTNIP00000008278   4.52e-39   291-396   Transforming growth factor (TGF)-beta  
ENSTNIP00000008502   4e-29   229-336   Transforming growth factor (TGF)-beta  
ENSTNIP00000008910   2.21e-45   13-146   Neurotrophin  
ENSTNIP00000009009   1.76e-33   306-412   Transforming growth factor (TGF)-beta  
ENSTNIP00000009165   1.98e-34   33-130   Platelet-derived growth factor-like  
ENSTNIP00000009680   2.15e-40   323-432   Transforming growth factor (TGF)-beta  
ENSTNIP00000009789   8.48e-20   345-404   Transforming growth factor (TGF)-beta  
ENSTNIP00000009892   3.7e-38   320-426   Transforming growth factor (TGF)-beta  
ENSTNIP00000010567   1.63e-38   299-406   Transforming growth factor (TGF)-beta  
ENSTNIP00000011795   2.67e-29   319-423   Transforming growth factor (TGF)-beta  
ENSTNIP00000011907   1.12e-34   321-430   Transforming growth factor (TGF)-beta  
ENSTNIP00000011915   1.42e-22   134-228   Transforming growth factor (TGF)-beta  
ENSTNIP00000012002   1.76e-35   35-130   Platelet-derived growth factor-like  
ENSTNIP00000012462   7.82e-28   31-130   Gonadodropin/Follitropin  
ENSTNIP00000012605   9.03e-21   257-352   Transforming growth factor (TGF)-beta  
ENSTNIP00000012751   3.01e-39   39-144   Gonadodropin/Follitropin  
ENSTNIP00000013151   1.29e-34   283-394   Transforming growth factor (TGF)-beta  
ENSTNIP00000013645   8.17e-40   313-420   Transforming growth factor (TGF)-beta  
ENSTNIP00000013665   3.27e-35   32-128   Platelet-derived growth factor-like  
ENSTNIP00000014004   1.25e-30   249-354   Transforming growth factor (TGF)-beta  
ENSTNIP00000014374   5.59e-36   304-414   Transforming growth factor (TGF)-beta  
ENSTNIP00000014445   3.47e-30   76-166   Platelet-derived growth factor-like  
ENSTNIP00000014446   5.2e-22   74-134   Platelet-derived growth factor-like  
ENSTNIP00000015348   3.76e-29   8-103   Gonadodropin/Follitropin  
ENSTNIP00000015586   3.78e-42   323-430   Transforming growth factor (TGF)-beta  
ENSTNIP00000015770   1.62e-64   22-209   Noggin  
ENSTNIP00000016013   1.4e-19   196-300   Platelet-derived growth factor-like  
ENSTNIP00000016220   2.78e-36   260-364   Transforming growth factor (TGF)-beta  
ENSTNIP00000016542   9.89e-37   275-386   Transforming growth factor (TGF)-beta  
ENSTNIP00000016836   2.86e-27   25-123   Gonadodropin/Follitropin  
ENSTNIP00000016837   0.0000903   53-127   Gonadodropin/Follitropin  
ENSTNIP00000017178   8.17e-37   160-271   Transforming growth factor (TGF)-beta  
ENSTNIP00000017424   0.0000552   91-185   Gonadodropin/Follitropin  
ENSTNIP00000017932   4.73e-21   121-219   Transforming growth factor (TGF)-beta  
ENSTNIP00000017936   6.88e-36   289-393   Transforming growth factor (TGF)-beta  
ENSTNIP00000018073   1.35e-48   2-131   Neurotrophin  
ENSTNIP00000018746   5.72e-35   29-147   Interleukin 17F, IL-17F  
ENSTNIP00000018789   1.07e-32   272-375   Transforming growth factor (TGF)-beta  
ENSTNIP00000018880   5.59e-22   131-226   Transforming growth factor (TGF)-beta  
ENSTNIP00000018932   3.61e-35   298-403   Transforming growth factor (TGF)-beta  
ENSTNIP00000019447   4e-35   298-406   Transforming growth factor (TGF)-beta  
ENSTNIP00000019625   2.24e-34   305-414   Transforming growth factor (TGF)-beta  
ENSTNIP00000019669   7.31e-42   327-435   Transforming growth factor (TGF)-beta  
ENSTNIP00000019819   1.16e-36   354-462   Transforming growth factor (TGF)-beta  
ENSTNIP00000019918   1.98e-33   315-421   Transforming growth factor (TGF)-beta  
ENSTNIP00000019921   6.62e-27   1-84   Platelet-derived growth factor-like  
ENSTNIP00000020296   1.5e-32   265-368   Transforming growth factor (TGF)-beta  
ENSTNIP00000020368   5.16e-42   295-401   Transforming growth factor (TGF)-beta  
ENSTNIP00000020522   6.32e-31   1-91   Platelet-derived growth factor-like  
ENSTNIP00000020550   4.26e-35   291-399   Transforming growth factor (TGF)-beta  
ENSTNIP00000021134   9.33e-27   91-183   Platelet-derived growth factor-like  
ENSTNIP00000021419   4.73e-29   285-386   Transforming growth factor (TGF)-beta  
ENSTNIP00000021450   6.77e-33   18-118   Gonadodropin/Follitropin  
ENSTNIP00000021453   5.01e-49   74-189   Neurotrophin  
ENSTNIP00000022020   3.01e-28   84-176   Platelet-derived growth factor-like  
ENSTNIP00000022029   1.18e-24   92-184   Platelet-derived growth factor-like  
ENSTNIP00000022199   1.03e-33   276-381   Transforming growth factor (TGF)-beta  
ENSTNIP00000022893   8.6e-37   164-275   Transforming growth factor (TGF)-beta  
ENSTNIP00000023050   9.03e-40   283-387   Transforming growth factor (TGF)-beta  
 
Weak hits:
ENSTNIP00000001718   0.00097   175-241   Transforming growth factor (TGF)-beta  
ENSTNIP00000003155   0.019   11-62   Interleukin 17F, IL-17F  
ENSTNIP00000003262   0.00137   42-135   Gonadodropin/Follitropin  
ENSTNIP00000008819   0.000869   172-238   Transforming growth factor (TGF)-beta  
ENSTNIP00000020153   0.0401   75-164   Gonadodropin/Follitropin  
ENSTNIP00000020589   0.0321   97-166   Transforming growth factor (TGF)-beta  

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Select to display   Genome       Domains   Proteins
No Yes ALL   72152 72152
No Yes Homo sapiens 76_38 Human 160 160
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 66 66
No Yes Gorilla gorilla 76_3.1 Western gorilla 89 89
No Yes Pongo abelii 76_2 Sumatran orangutan 66 66
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 61 61
No Yes Papio anubis 76 Olive baboon 70 70
No Yes Macaca mulatta 76_1 Rhesus monkey 85 85
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 115 115
No Yes Otolemur garnettii 76_3 Small-eared galago 65 65
No Yes Microcebus murinus 76_1 Gray mouse lemur 44 44
No Yes Rattus norvegicus 76_5.0 Norway rat 66 66
No Yes Mus musculus 76_38 House mouse 97 97
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 48 48
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 62 62
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 59 59
No Yes Cavia porcellus 76_3 Domestic guinea pig 63 63
No Yes Oryctolagus cuniculus 76_2 Rabbit 56 56
No Yes Ochotona princeps 76 American pika 47 47
No Yes Tupaia belangeri 76 Northern tree shrew 38 38
No Yes Sus scrofa 76_10.2 Pig 71 71
No Yes Bos taurus 76_3.1 Cattle 69 69
No Yes Ovis aries 76_3.1 Sheep 57 57
No Yes Vicugna pacos 76_1 Alpaca 26 26
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 58 58
No Yes Mustela putorius furo 76_1.0 Domestic ferret 57 57
No Yes Ailuropoda melanoleuca 76_1 Giant panda 60 60
No Yes Canis familiaris 76_3.1 Dog 71 71
No Yes Felis catus 76_6.2 Domestic cat 57 57
No Yes Equus caballus 76_2 Horse 56 56
No Yes Myotis lucifugus 76_2.0 Little brown bat 57 57
No Yes Pteropus vampyrus 76_1 Large flying fox 56 56
No Yes Sorex araneus 76_1 European shrew 36 36
No Yes Erinaceus europaeus 76 Western European hedgehog 46 46
No Yes Procavia capensis 76_1 Cape rock hyrax 46 46
No Yes Loxodonta africana 76_3 African savanna elephant 77 77
No Yes Echinops telfairi 76 Small Madagascar hedgehog 41 41
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 64 64
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 31 31
No Yes Macropus eugenii 76_1.0 Tammar wallaby 45 45
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 60 60
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 60 60
No Yes Ornithorhynchus anatinus 76_5 Platypus 55 55
No Yes Saccoglossus kowalevskii v3.0   54 53
No Yes Petromyzon marinus 76_7.0 Sea lamprey 28 28
No Yes Meleagris gallopavo 76_2 Turkey 54 54
No Yes Gallus gallus 76_4 Chicken 52 52
No Yes Anas platyrhynchos 76_1.0 Mallard 57 57
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 54 54
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 55 55
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 58 58
No Yes Anolis carolinensis 76_2.0 Green anole 54 54
No Yes Xenopus laevis African clawed frog 224 224
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 66 66
No Yes Latimeria chalumnae 76_1 Coelacanth 79 79
No Yes Lepisosteus oculatus 76 Spotted gar 78 78
No Yes Gadus morhua 76_1 Atlantic cod 72 72
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 81 81
No Yes Takifugu rubripes 76_4 Torafugu 193 193
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 87 87
No Yes Oryzias latipes 76_1 Japanese medaka 76 76
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 77 77
No Yes Poecilia formosa 76 Amazon molly 78 76
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 96 96
No Yes Astyanax mexicanus 76 Mexican tetra 85 85
No Yes Danio rerio 76_9 Zebrafish 121 121
No Yes Oikopleura dioica   4 3
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 22 22
No Yes Ciona intestinalis 76 Vase tunicate 22 22
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 55 49
No Yes Adineta vaga   12 12
No Yes Octopus bimaculoides 280   60 59
No Yes Crassostrea gigas 22 Pacific oyster 32 31
No Yes Lottia gigantea Owl limpet 30 30
No Yes Helobdella robusta   16 15
No Yes Capitella sp. I   40 40
No Yes Danaus plexippus OGS1.0 Monarch butterfly 18 18
No Yes Heliconius melpomene Postman butterfly 15 15
No Yes Bombyx mori Domestic silkworm 14 14
No Yes Nasonia vitripennis Jewel wasp 15 15
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 20 20
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 22 21
No Yes Linepithema humile v1.1 Argentine ant 24 23
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 21 21
No Yes Solenopsis invicta v.2.2.3 Red fire ant 18 18
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 20 20
No Yes Atta cephalotes v1.1   21 21
No Yes Camponotus floridanus v3.3 Florida carpenter ant 22 22
No Yes Lucilia cuprina Australian sheep blowfly 20 19
No Yes Drosophila grimshawi 1.3   20 20
No Yes Drosophila willistoni 1.3   18 18
No Yes Drosophila pseudoobscura 2.13   24 24
No Yes Drosophila persimilis 1.3   17 17
No Yes Drosophila suzukii   24 23
No Yes Drosophila yakuba 1.3   19 19
No Yes Drosophila simulans 1.3   16 16
No Yes Drosophila sechellia 1.3   21 21
No Yes Drosophila melanogaster 76_5 Fruit fly 45 44
No Yes Drosophila erecta 1.3   19 19
No Yes Drosophila ananassae 1.3   18 18
No Yes Drosophila virilis 1.2   20 20
No Yes Drosophila mojavensis 1.3   20 20
No Yes Megaselia scalaris 22   6 6
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 20 20
No Yes Culex pipiens quinquefasciatus Southern house mosquito 16 16
No Yes Anopheles darlingi 22 American malaria mosquito 13 12
No Yes Anopheles gambiae 49_3j African malaria mosquito 19 18
No Yes Tribolium castaneum 3.0 Red flour beetle 28 27
No Yes Pediculus humanus corporis (Early assembly) Human body louse 19 19
No Yes Acyrthosiphon pisum Pea aphid 17 17
No Yes Rhodnius prolixus 22   15 15
No Yes Daphnia pulex Common water flea 73 73
No Yes Strigamia maritima 22   28 28
No Yes Sarcoptes scabiei   16 16
No Yes Tetranychus urticae Two-spotted spider mite 26 26
No Yes Ixodes scapularis (Preliminary) Black-legged tick 35 32
No Yes Pristionchus pacificus   14 14
No Yes Meloidogyne incognita Southern root-knot nematode 7 7
No Yes Meloidogyne hapla   8 8
No Yes Onchocerca volvulus 22   15 15
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 15 15
No Yes Caenorhabditis japonica   19 19
No Yes Caenorhabditis brenneri   22 22
No Yes Caenorhabditis remanei   21 21
No Yes Caenorhabditis elegans 76_235 Roundworm 29 29
No Yes Caenorhabditis briggsae 2   18 18
No Yes Trichinella spiralis 22   11 10
No Yes Hymenolepis microstoma   6 6
No Yes Echinococcus multilocularis   5 5
No Yes Echinococcus granulosus   5 5
No Yes Taenia solium Pork tapeworm 6 6
No Yes Schistosoma mansoni   5 5
No Yes Mnemiopsis leidyi Sea walnut 12 12
No Yes Thelohanellus kitauei   4 4
No Yes Acropora digitifera v1.0   22 21
No Yes Nematostella vectensis 1.0 Starlet sea anemone 24 24
No Yes Hydra vulgaris   16 16
No Yes Amphimedon queenslandica   10 10
No Yes Trichoplax adhaerens   6 6
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 116 116
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 47 46
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 22 20
No Yes Ascaris suum Victoria/Ghent Pig roundworm 18 18
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 21 21
No Yes Homo sapiens 75_37 (old version GRC) Human 159 159
No Yes Homo sapiens (NCBI version) Human 117 117
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 63 63
No Yes Heliconius numata (Incomplete)   7 7
No Yes Loa loa v3.3 (Request) Eye worm 14 14
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 11 11
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 10 10
No Yes Homo sapiens 69_37 Human 72 72
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 61 61
No Yes Gorilla gorilla 69_3.1 Western gorilla 68 68
No Yes Pongo abelii 69_2 Sumatran orangutan 64 64
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 58 58
No Yes Macaca mulatta 69_1 Rhesus monkey 62 62
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 60 60
No Yes Otolemur garnettii 69_3 Small-eared galago 62 62
No Yes Microcebus murinus 69_1 Gray mouse lemur 44 44
No Yes Rattus norvegicus 69_3.4 Norway rat 60 60
No Yes Mus musculus 69_38 House mouse 63 63
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 48 48
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 61 61
No Yes Cavia porcellus 69_3 Domestic guinea pig 59 59
No Yes Oryctolagus cuniculus 69_2 Rabbit 55 55
No Yes Ochotona princeps 69 American pika 47 47
No Yes Tupaia belangeri 69 Northern tree shrew 38 38
No Yes Sus scrofa 69_10.2 Pig 59 59
No Yes Bos taurus 69_3.1 Cattle 65 65
No Yes Vicugna pacos 69_1 Alpaca 26 26
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 58 58
No Yes Mustela putorius furo 69_1.0 Domestic ferret 57 57
No Yes Ailuropoda melanoleuca 69_1 Giant panda 58 58
No Yes Canis familiaris 69_3.1 Dog 59 59
No Yes Felis catus 69 Domestic cat 44 44
No Yes Equus caballus 69_2 Horse 54 54
No Yes Myotis lucifugus 69_2.0 Little brown bat 56 56
No Yes Pteropus vampyrus 69_1 Large flying fox 56 56
No Yes Sorex araneus 69_1 European shrew 36 36
No Yes Erinaceus europaeus 69 Western European hedgehog 46 46
No Yes Procavia capensis 69_1 Cape rock hyrax 46 46
No Yes Loxodonta africana 69_3 African savanna elephant 63 63
No Yes Echinops telfairi 69 Small Madagascar hedgehog 41 41
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 32 32
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 31 31
No Yes Macropus eugenii 69_1.0 Tammar wallaby 45 45
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 51 51
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 58 58
No Yes Ornithorhynchus anatinus 69_5 Platypus 51 51
No Yes Petromyzon marinus 69_7.0 Sea lamprey 28 28
No Yes Meleagris gallopavo 69_2 Turkey 48 48
No Yes Gallus gallus 69_2 Chicken 48 48
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 52 52
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 52 52
No Yes Anolis carolinensis 69_2.0 Green anole 51 51
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 61 61
No Yes Latimeria chalumnae 69_1 Coelacanth 69 69
No Yes Gadus morhua 69_1 Atlantic cod 67 67
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 76 76
No Yes Takifugu rubripes 69_4 Torafugu 78 78
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 72 72
No Yes Oryzias latipes 69_1 Japanese medaka 61 61
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 77 77
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 83 83
No Yes Danio rerio 69_9 Zebrafish 85 85
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 12 12
No Yes Ciona intestinalis 69 Vase tunicate 22 22
No Yes Drosophila melanogaster 69_5 Fruit fly 21 21
No Yes Caenorhabditis elegans 69_215 Roundworm 19 19
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes NCBI 2017_08 genome   25435 25386
No Yes STRING v9.0.5 (STRING)   2030 2023
No Yes Uniprot 2018_03 genome   28686 28546
No Yes NCBI viral sequences (Viral)   22 22
No Yes PDB chains (SCOP 1.75) (PDB)   40 40
No Yes Protein Data Bank (all PDB sequenc)   460 460
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   1031 1031
No Yes TargetDB (Targets)   69 69
No Yes UniProt viral sequences (Viral)   42 42

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