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DNA-binding domain superfamily domain assignments
in
Vitis vinifera

Assignment details

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Vitis vinifera has 135 significant domains in 113 proteins.

     

Sequence ID   Evalue   Region   Family  
GSVIVT01000620001   0.00000216   66-95   GCC-box binding domain  
GSVIVT01001089001   1.37e-22   52-110   GCC-box binding domain  
GSVIVT01002195001   9.15e-22   91-149   GCC-box binding domain  
GSVIVT01002262001   1.05e-23   94-152   GCC-box binding domain  
GSVIVT01002536001   8.5e-18   355-415   GCC-box binding domain  
  0.00000000255   288-322   GCC-box binding domain  
  0.0085   209-232   GCC-box binding domain  
GSVIVT01003250001   0.0000000458   33-78   GCC-box binding domain  
GSVIVT01004382001   1.24e-17   396-456   GCC-box binding domain  
  0.00000000235   329-363   GCC-box binding domain  
  0.0163   234-257   GCC-box binding domain  
GSVIVT01005747001   5.82e-21   2-59   GCC-box binding domain  
GSVIVT01006277001   6.54e-22   74-132   GCC-box binding domain  
GSVIVT01007388001   1.57e-17   359-419   GCC-box binding domain  
  7.85e-17   257-326   GCC-box binding domain  
GSVIVT01007798001   0.000000222   66-100   GCC-box binding domain  
GSVIVT01008649001   2.62e-23   56-114   GCC-box binding domain  
GSVIVT01009007001   2.48e-23   112-170   GCC-box binding domain  
GSVIVT01009040001   0.00000324   211-260   Methyl-CpG-binding domain, MBD  
GSVIVT01009293001   2.75e-18   78-138   GCC-box binding domain  
  0.00000000229   9-45   GCC-box binding domain  
GSVIVT01009801001   4.51e-21   13-70   GCC-box binding domain  
GSVIVT01010547001   0.000000000000948   7-77   Methyl-CpG-binding domain, MBD  
  0.0000000000275   101-153   Methyl-CpG-binding domain, MBD  
GSVIVT01010629001   5.43e-18   92-150   GCC-box binding domain  
GSVIVT01010631001   0.00000032   56-85   GCC-box binding domain  
GSVIVT01011058001   3.27e-24   58-172   Methyl-CpG-binding domain, MBD  
GSVIVT01011350001   3.47e-18   146-207   GCC-box binding domain  
  0.0000000000000183   47-113   GCC-box binding domain  
GSVIVT01011465001   2.55e-19   45-102   GCC-box binding domain  
GSVIVT01011902001   1.63e-17   93-144   GCC-box binding domain  
GSVIVT01013905001   1.31e-22   114-173   GCC-box binding domain  
GSVIVT01013913001   9.15e-23   119-178   GCC-box binding domain  
GSVIVT01013914001   5.49e-22   154-213   GCC-box binding domain  
GSVIVT01013916001   9.15e-23   119-178   GCC-box binding domain  
GSVIVT01013917001   1.63e-21   192-251   GCC-box binding domain  
GSVIVT01013918001   3.86e-23   69-128   GCC-box binding domain  
GSVIVT01013923001   1.11e-21   119-178   GCC-box binding domain  
GSVIVT01013924001   1.11e-21   119-178   GCC-box binding domain  
GSVIVT01013929001   4.71e-22   115-174   GCC-box binding domain  
GSVIVT01013931001   1.05e-22   66-125   GCC-box binding domain  
GSVIVT01013934001   1.31e-22   448-507   GCC-box binding domain  
  4.51e-21   180-239   GCC-box binding domain  
  0.000000000157   260-295   GCC-box binding domain  
GSVIVT01013935001   2.55e-23   90-149   GCC-box binding domain  
GSVIVT01014291001   9.81e-23   21-78   GCC-box binding domain  
GSVIVT01015037001   1.44e-20   91-149   GCC-box binding domain  
GSVIVT01015540001   2.55e-20   41-99   GCC-box binding domain  
GSVIVT01015565001   2.29e-22   5-92   Methyl-CpG-binding domain, MBD  
GSVIVT01015726001   0.00000137   104-152   Methyl-CpG-binding domain, MBD  
GSVIVT01016097001   7.85e-18   145-206   GCC-box binding domain  
  1.05e-16   43-112   GCC-box binding domain  
GSVIVT01016352001   7.85e-17   109-167   GCC-box binding domain  
  3.73e-16   17-75   GCC-box binding domain  
GSVIVT01016764001   1.37e-17   315-376   GCC-box binding domain  
  3.73e-17   213-282   GCC-box binding domain  
GSVIVT01017315001   4.64e-21   6-64   GCC-box binding domain  
GSVIVT01017330001   6.87e-21   4-97   Methyl-CpG-binding domain, MBD  
GSVIVT01017542001   9.81e-22   132-189   GCC-box binding domain  
GSVIVT01017571001   9.15e-21   8-66   GCC-box binding domain  
GSVIVT01017572001   6.54e-21   7-65   GCC-box binding domain  
GSVIVT01018226001   1.18e-20   554-612   GCC-box binding domain  
GSVIVT01018270001   1.83e-23   82-142   GCC-box binding domain  
GSVIVT01018271001   1.57e-23   82-142   GCC-box binding domain  
GSVIVT01018272001   6.54e-23   82-141   GCC-box binding domain  
GSVIVT01019047001   0.0000000000000085   85-146   GCC-box binding domain  
GSVIVT01019049001   7.19e-18   333-394   GCC-box binding domain  
  2.22e-17   231-300   GCC-box binding domain  
GSVIVT01019519001   7.85e-23   103-161   GCC-box binding domain  
GSVIVT01019717001   2.75e-19   79-135   GCC-box binding domain  
GSVIVT01019811001   0.00000291   3-36   Methyl-CpG-binding domain, MBD  
GSVIVT01019812001   0.00000000000392   110-168   Methyl-CpG-binding domain, MBD  
  0.0000000000147   36-88   Methyl-CpG-binding domain, MBD  
GSVIVT01019860001   3.47e-21   52-111   GCC-box binding domain  
GSVIVT01020066001   1.37e-17   176-237   GCC-box binding domain  
  1.37e-16   74-143   GCC-box binding domain  
GSVIVT01020584001   1.5e-22   17-75   GCC-box binding domain  
GSVIVT01021060001   1.77e-21   285-342   GCC-box binding domain  
GSVIVT01021098001   1.05e-21   20-78   GCC-box binding domain  
GSVIVT01021146001   7.19e-23   60-119   GCC-box binding domain  
GSVIVT01022076001   5.04e-21   24-82   GCC-box binding domain  
GSVIVT01022081001   5.62e-17   229-289   GCC-box binding domain  
  0.00000000000000124   137-195   GCC-box binding domain  
GSVIVT01022109001   0.00000000183   15-51   GCC-box binding domain  
GSVIVT01022277001   4.18e-22   155-213   GCC-box binding domain  
GSVIVT01023582001   0.00000000000000621   46-102   GCC-box binding domain  
GSVIVT01023697001   8.5e-18   146-207   GCC-box binding domain  
  9.81e-17   44-113   GCC-box binding domain  
GSVIVT01024953001   1.77e-16   47-140   Methyl-CpG-binding domain, MBD  
GSVIVT01024954001   7.52e-18   4-58   Methyl-CpG-binding domain, MBD  
GSVIVT01025031001   5.23e-17   9-96   Methyl-CpG-binding domain, MBD  
  0.0000000000131   90-183   Methyl-CpG-binding domain, MBD  
GSVIVT01025100001   7.85e-17   229-288   GCC-box binding domain  
  5.82e-16   137-195   GCC-box binding domain  
GSVIVT01025307001   6.21e-18   267-327   GCC-box binding domain  
  0.00000000000000719   167-234   GCC-box binding domain  
GSVIVT01025461001   3.01e-19   35-93   GCC-box binding domain  
GSVIVT01025548001   1.18e-16   242-301   GCC-box binding domain  
  7.19e-16   150-208   GCC-box binding domain  
GSVIVT01026334001   0.0000000000137   7-44   GCC-box binding domain  
GSVIVT01027345001   2.81e-16   153-212   GCC-box binding domain  
  0.000000000000157   58-124   GCC-box binding domain  
GSVIVT01027463001   0.0000785   20-54   GCC-box binding domain  
GSVIVT01027770001   4.32e-23   20-79   GCC-box binding domain  
GSVIVT01028050001   1.7e-22   74-132   GCC-box binding domain  
GSVIVT01028312001   1.37e-23   17-76   GCC-box binding domain  
GSVIVT01028313001   2.09e-22   96-155   GCC-box binding domain  
GSVIVT01028314001   9.15e-24   18-77   GCC-box binding domain  
GSVIVT01028315001   9.81e-22   137-197   GCC-box binding domain  
GSVIVT01029219001   6.15e-18   205-266   GCC-box binding domain  
  1.11e-17   103-172   GCC-box binding domain  
GSVIVT01030278001   0.0000000000235   9-47   GCC-box binding domain  
GSVIVT01030515001   7.85e-23   20-76   GCC-box binding domain  
GSVIVT01031387001   3.73e-21   45-104   GCC-box binding domain  
GSVIVT01031388001   3.6e-21   53-112   GCC-box binding domain  
GSVIVT01031747001   2.29e-22   108-166   GCC-box binding domain  
GSVIVT01032322001   1.08e-29   148-256   Methyl-CpG-binding domain, MBD  
GSVIVT01032746001   1.18e-19   64-121   GCC-box binding domain  
GSVIVT01032785001   1.44e-20   60-118   GCC-box binding domain  
GSVIVT01032961001   3.47e-21   22-79   GCC-box binding domain  
GSVIVT01032983001   3.92e-22   58-116   GCC-box binding domain  
GSVIVT01033273001   0.000000000000137   69-138   GCC-box binding domain  
GSVIVT01033416001   2.94e-19   31-88   GCC-box binding domain  
GSVIVT01033793001   9.15e-21   39-98   GCC-box binding domain  
GSVIVT01033795001   3.27e-17   59-117   GCC-box binding domain  
GSVIVT01034563001   1.5e-22   253-311   GCC-box binding domain  
GSVIVT01035098001   2.16e-22   89-146   GCC-box binding domain  
GSVIVT01035502001   7.19e-21   24-83   GCC-box binding domain  
GSVIVT01035852001   8.5e-20   7-65   GCC-box binding domain  
GSVIVT01035911001   2.48e-21   7-66   GCC-box binding domain  
GSVIVT01036046001   2.75e-22   8-107   Methyl-CpG-binding domain, MBD  
GSVIVT01036201001   6.54e-23   79-138   GCC-box binding domain  
GSVIVT01036228001   7.85e-22   32-89   GCC-box binding domain  
GSVIVT01036388001   6.41e-21   13-71   GCC-box binding domain  
GSVIVT01036389001   1.63e-22   17-76   GCC-box binding domain  
GSVIVT01036447001   0.0000000000634   61-102   GCC-box binding domain  
GSVIVT01037712001   2.29e-22   83-140   GCC-box binding domain  
 
Weak hits:
GSVIVT01009294001   0.0034   214-240   GCC-box binding domain  
GSVIVT01010630001   0.0051   30-58   GCC-box binding domain  
GSVIVT01017034001   0.000229   105-124   GCC-box binding domain  
GSVIVT01024648001   0.00981   61-86   GCC-box binding domain  
GSVIVT01026120001   0.000258   55-103   Methyl-CpG-binding domain, MBD  
GSVIVT01027492001   0.0144   12-55   Methyl-CpG-binding domain, MBD  

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Select to display   Genome       Domains   Proteins
No Yes ALL   129270 129270
No Yes Homo sapiens 76_38 Human 56 56
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 11 11
No Yes Gorilla gorilla 76_3.1 Western gorilla 17 17
No Yes Pongo abelii 76_2 Sumatran orangutan 12 12
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 10 10
No Yes Papio anubis 76 Olive baboon 13 13
No Yes Macaca mulatta 76_1 Rhesus monkey 24 24
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 28 28
No Yes Otolemur garnettii 76_3 Small-eared galago 11 11
No Yes Microcebus murinus 76_1 Gray mouse lemur 8 8
No Yes Rattus norvegicus 76_5.0 Norway rat 12 12
No Yes Mus musculus 76_38 House mouse 27 27
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 7 7
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 11 11
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 10 10
No Yes Cavia porcellus 76_3 Domestic guinea pig 11 11
No Yes Oryctolagus cuniculus 76_2 Rabbit 10 10
No Yes Ochotona princeps 76 American pika 9 9
No Yes Tupaia belangeri 76 Northern tree shrew 9 9
No Yes Sus scrofa 76_10.2 Pig 13 13
No Yes Bos taurus 76_3.1 Cattle 12 12
No Yes Ovis aries 76_3.1 Sheep 13 13
No Yes Vicugna pacos 76_1 Alpaca 7 7
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 11 11
No Yes Mustela putorius furo 76_1.0 Domestic ferret 10 10
No Yes Ailuropoda melanoleuca 76_1 Giant panda 11 11
No Yes Canis familiaris 76_3.1 Dog 16 16
No Yes Felis catus 76_6.2 Domestic cat 10 10
No Yes Equus caballus 76_2 Horse 13 13
No Yes Myotis lucifugus 76_2.0 Little brown bat 9 9
No Yes Pteropus vampyrus 76_1 Large flying fox 10 10
No Yes Sorex araneus 76_1 European shrew 6 6
No Yes Erinaceus europaeus 76 Western European hedgehog 8 8
No Yes Procavia capensis 76_1 Cape rock hyrax 8 8
No Yes Loxodonta africana 76_3 African savanna elephant 14 14
No Yes Echinops telfairi 76 Small Madagascar hedgehog 8 8
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 16 16
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 6 6
No Yes Macropus eugenii 76_1.0 Tammar wallaby 10 10
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 15 15
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 13 13
No Yes Ornithorhynchus anatinus 76_5 Platypus 9 9
No Yes Saccoglossus kowalevskii v3.0   11 11
No Yes Petromyzon marinus 76_7.0 Sea lamprey 5 5
No Yes Meleagris gallopavo 76_2 Turkey 7 7
No Yes Gallus gallus 76_4 Chicken 6 6
No Yes Anas platyrhynchos 76_1.0 Mallard 6 6
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 5 5
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 4 4
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 5 5
No Yes Anolis carolinensis 76_2.0 Green anole 10 10
No Yes Xenopus laevis African clawed frog 28 28
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 17 17
No Yes Latimeria chalumnae 76_1 Coelacanth 14 14
No Yes Lepisosteus oculatus 76 Spotted gar 11 11
No Yes Gadus morhua 76_1 Atlantic cod 9 9
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 10 10
No Yes Takifugu rubripes 76_4 Torafugu 29 29
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 12 12
No Yes Oryzias latipes 76_1 Japanese medaka 11 11
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 10 10
No Yes Poecilia formosa 76 Amazon molly 11 11
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 18 18
No Yes Astyanax mexicanus 76 Mexican tetra 13 13
No Yes Danio rerio 76_9 Zebrafish 18 18
No Yes Ciona intestinalis 76 Vase tunicate 2 2
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 5 5
No Yes Adineta vaga   10 10
No Yes Octopus bimaculoides 280   6 6
No Yes Crassostrea gigas 22 Pacific oyster 4 4
No Yes Lottia gigantea Owl limpet 6 5
No Yes Helobdella robusta   4 4
No Yes Capitella sp. I   6 6
No Yes Danaus plexippus OGS1.0 Monarch butterfly 7 7
No Yes Heliconius melpomene Postman butterfly 5 5
No Yes Bombyx mori Domestic silkworm 4 4
No Yes Nasonia vitripennis Jewel wasp 2 2
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 5 5
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 4 4
No Yes Linepithema humile v1.1 Argentine ant 4 4
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 4 4
No Yes Solenopsis invicta v.2.2.3 Red fire ant 3 3
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 4 4
No Yes Atta cephalotes v1.1   4 4
No Yes Camponotus floridanus v3.3 Florida carpenter ant 4 4
No Yes Lucilia cuprina Australian sheep blowfly 6 6
No Yes Drosophila grimshawi 1.3   6 6
No Yes Drosophila willistoni 1.3   6 6
No Yes Drosophila pseudoobscura 2.13   6 6
No Yes Drosophila persimilis 1.3   7 7
No Yes Drosophila suzukii   5 5
No Yes Drosophila yakuba 1.3   5 5
No Yes Drosophila simulans 1.3   5 5
No Yes Drosophila sechellia 1.3   6 6
No Yes Drosophila melanogaster 76_5 Fruit fly 16 16
No Yes Drosophila erecta 1.3   6 6
No Yes Drosophila ananassae 1.3   6 6
No Yes Drosophila virilis 1.2   6 6
No Yes Drosophila mojavensis 1.3   6 6
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 4 4
No Yes Culex pipiens quinquefasciatus Southern house mosquito 5 5
No Yes Anopheles darlingi 22 American malaria mosquito 4 4
No Yes Anopheles gambiae 49_3j African malaria mosquito 4 4
No Yes Tribolium castaneum 3.0 Red flour beetle 5 5
No Yes Pediculus humanus corporis (Early assembly) Human body louse 7 5
No Yes Acyrthosiphon pisum Pea aphid 3 3
No Yes Rhodnius prolixus 22   5 5
No Yes Daphnia pulex Common water flea 8 8
No Yes Strigamia maritima 22   142 139
No Yes Sarcoptes scabiei   4 4
No Yes Tetranychus urticae Two-spotted spider mite 5 5
No Yes Ixodes scapularis (Preliminary) Black-legged tick 7 7
No Yes Pristionchus pacificus   2 2
No Yes Meloidogyne incognita Southern root-knot nematode 1 1
No Yes Meloidogyne hapla   1 1
No Yes Onchocerca volvulus 22   2 2
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 2 2
No Yes Caenorhabditis japonica   2 2
No Yes Caenorhabditis brenneri   2 2
No Yes Caenorhabditis remanei   3 3
No Yes Caenorhabditis elegans 76_235 Roundworm 2 2
No Yes Caenorhabditis briggsae 2   2 2
No Yes Trichinella spiralis 22   3 3
No Yes Hymenolepis microstoma   3 3
No Yes Echinococcus multilocularis   3 3
No Yes Echinococcus granulosus   3 3
No Yes Taenia solium Pork tapeworm 3 3
No Yes Schistosoma mansoni   4 4
No Yes Mnemiopsis leidyi Sea walnut 4 4
No Yes Thelohanellus kitauei   1 1
No Yes Acropora digitifera v1.0   2 2
No Yes Nematostella vectensis 1.0 Starlet sea anemone 3 3
No Yes Hydra vulgaris   3 3
No Yes Amphimedon queenslandica   5 5
No Yes Trichoplax adhaerens   1 1
No Yes Catenaria anguillulae PL171 v1.0   2 1
No Yes Allomyces macrogynus ATCC 38327   1 1
No Yes Selaginella moellendorffii   136 120
No Yes Pinus taeda Loblolly pine 315 266
No Yes Picea abies Norway spruce 173 162
No Yes Eucalyptus grandis v201 Rose gum 208 184
No Yes Theobroma cacao B97-61/B2 v1 Cacao 162 140
No Yes Gossypium raimondii v221   455 385
No Yes Citrus clementina v165   204 176
No Yes Citrus sinensis v154 Sweet orange 219 180
No Yes Thellungiella halophila v173   182 165
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 331 305
No Yes Capsella rubella v183   182 166
No Yes Arabidopsis lyrata Lyrate rockcress 177 161
No Yes Arabidopsis thaliana 10 Thale cress 217 192
No Yes Carica papaya Papaya 117 103
No Yes Medicago truncatula Barrel medic 326 287
No Yes Phaseolus vulgaris v186 French bean 241 205
No Yes Glycine max v109 Soybean 448 397
No Yes Cucumis sativus v122 Cucumber 202 176
No Yes Fragaria vesca Wild strawberry 152 131
No Yes Malus domestica v196 Apple 353 306
No Yes Prunus persica v139 Peach 158 141
No Yes Linum usitatissimum v200 Flax 295 260
No Yes Manihot esculenta v147 Cassava 238 213
No Yes Populus trichocarpa v156 Black cottonwood 269 239
No Yes Vitis vinifera Wine grape 135 113
No Yes Mimulus guttatus v140 Spotted monkey flower 181 154
No Yes Solanum lycopersicum v.2.3 Tomato 222 186
No Yes Solanum tuberosum Potato 313 273
No Yes Actinidia chinensis Hongyang   262 236
No Yes Aquilegia coerulea v195   146 124
No Yes Triticum urartu 22   98 77
No Yes Triticum aestivum 22 Bread wheat 295 255
No Yes Aegilops tauschii 22   140 114
No Yes Brachypodium distachyon Stiff brome 196 166
No Yes Oryza barthii 22 African wild rice 189 153
No Yes Oryza meridionalis 22   213 172
No Yes Oryza glumaepatula 22   246 200
No Yes Oryza glaberrima African rice 165 139
No Yes Oryza punctata 22   237 189
No Yes Oryza nivara 22   260 213
No Yes Oryza brachyantha 22 Malo sina 144 119
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 278 231
No Yes Oryza sativa v193 Rice 262 225
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 178 160
No Yes Panicum virgatum v202 Switchgrass 343 298
No Yes Setaria italica v164 Foxtail millet 230 202
No Yes Zea mays subsp. mays Maize 343 272
No Yes Zea mays v181 Maize 383 299
No Yes Sorghum bicolor Sorghum 201 173
No Yes Musa balbisiana Balbis banana 356 320
No Yes Musa acuminata 22 Wild Malaysian banana 336 285
No Yes Amborella trichopoda 22   97 81
No Yes Physcomitrella patens   176 165
No Yes Coccomyxa subellipsoidea sp. C-169 v2   46 21
No Yes Asterochloris sp. Cgr/DA1pho v1.0   17 13
No Yes Chlorella variabilis sp. NC64A   29 18
No Yes Chlorella vulgaris   36 21
No Yes Volvox carteri f. nagariensis   31 24
No Yes Volvox carteri v199   29 22
No Yes Chlamydomonas reinhardtii 4.0   24 18
No Yes Ostreococcus sp. RCC809   15 10
No Yes Ostreococcus lucimarinus CCE9901   15 11
No Yes Ostreococcus tauri   11 8
No Yes Bathycoccus prasinos   15 12
No Yes Micromonas sp. RCC299   22 14
No Yes Micromonas pusilla CCMP1545 v3.0   28 18
No Yes Cyanidioschyzon merolae strain 10D 22   1 1
No Yes Cyanidioschyzon merolae   1 1
No Yes Bigelowiella natans CCMP2755 22   21 14
No Yes Cyanophora paradoxa   19 18
No Yes Ectocarpus siliculosus   10 10
No Yes Aureococcus anophagefferens   23 21
No Yes Pythium iwayamai DAOM BR242034 22   3 2
No Yes Pythium arrhenomanes ATCC 12531 22   2 1
No Yes Pythium aphanidermatum DAOM BR444 22   1 1
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 5 4
No Yes Phytophthora sojae 1.1   4 3
No Yes Phytophthora infestans T30-4   3 2
No Yes Phytophthora capsici   4 3
No Yes Hyaloperonospora arabidopsidis 22   2 1
No Yes Phaeodactylum tricornutumCCAP 1055/1   4 4
No Yes Fragilariopsis cylindrus   12 10
No Yes Thalassiosira pseudonana CCMP1335   34 27
No Yes Symbiodinium minutum clade B1 v1.2   6 4
No Yes Guillardia theta CCMP2712 v1.0   13 9
No Yes Emiliania huxleyi CCMP1516   464 232
No Yes Trichodesmium erythraeum IMS101   1 1
No Yes Rhodococcus erythropolis PR4   1 1
No Yes Bifidobacterium breve ACS-071-V-Sch8b   1 1
No Yes Mobiluncus curtisii ATCC 43063   1 1
No Yes Finegoldia magna ATCC 29328   1 1
No Yes Acidaminococcus fermentans DSM 20731   2 2
No Yes Selenomonas ruminantium subsp. lactilytica TAM6421   1 1
No Yes Eubacterium siraeum   1 1
No Yes Faecalibacterium prausnitzii   2 2
No Yes Ruminococcus sp.   3 3
No Yes Ruminococcus albus 7   2 2
No Yes Oscillibacter valericigenes Sjm18-20   2 2
No Yes butyrate-producing bacterium SS3/4   5 5
No Yes Desulfosporosinus acidiphilus SJ4   1 1
No Yes Desulfitobacterium dehalogenans ATCC 51507   1 1
No Yes Eubacterium limosum KIST612   2 2
No Yes Clostridium difficile 630   2 2
No Yes Filifactor alocis ATCC 35896   2 2
No Yes Clostridium saccharolyticum WM1   1 1
No Yes Clostridium phytofermentans ISDg   1 1
No Yes Clostridium lentocellum DSM 5427   1 1
No Yes [Ruminococcus] obeum   4 4
No Yes [Ruminococcus] torques   8 8
No Yes Eubacterium rectale M104/1   1 1
No Yes Eubacterium rectale ATCC 33656   3 3
No Yes Roseburia hominis A2-183   1 1
No Yes Roseburia intestinalis   1 1
No Yes Butyrivibrio proteoclasticus B316   1 1
No Yes Butyrivibrio fibrisolvens   1 1
No Yes Clostridium ljungdahlii DSM 13528   1 1
No Yes Enterococcus faecium Aus0004   1 1
No Yes Enterococcus faecalis 62   1 1
No Yes Lactobacillus acidophilus 30SC   1 1
No Yes Streptococcus gallolyticus UCN34   1 1
No Yes Streptococcus pseudopneumoniae IS7493   1 1
No Yes Streptococcus dysgalactiae subsp. equisimilis GGS_124   1 1
No Yes Streptococcus pneumoniae P1031   1 1
No Yes Streptococcus oralis Uo5   1 1
No Yes Paenibacillus sp. JDR-2   1 1
No Yes Paenibacillus polymyxa M1   1 1
No Yes Solibacillus silvestris StLB046   1 1
No Yes Staphylococcus pseudintermedius HKU10-03   1 1
No Yes Staphylococcus haemolyticus JCSC1435   1 1
No Yes Haliscomenobacter hydrossis DSM 1100   1 1
No Yes Flexibacter litoralis DSM 6794   1 1
No Yes Gramella forsetii KT0803   1 1
No Yes Treponema succinifaciens DSM 2489   1 1
No Yes Neisseria gonorrhoeae NCCP11945   1 1
No Yes Burkholderia phymatum STM815   1 1
No Yes Burkholderia thailandensis E264   1 1
No Yes Burkholderia multivorans ATCC 17616   1 1
No Yes Burkholderia vietnamiensis G4   3 3
No Yes Burkholderia glumae BGR1   2 2
No Yes Delftia sp. Cs1-4   1 1
No Yes Delftia acidovorans SPH-1   3 3
No Yes Acidovorax sp. KKS102   1 1
No Yes Acidovorax citrulli AAC00-1   1 1
No Yes Pusillimonas sp. T7-7   1 1
No Yes Bordetella pertussis Tohama I   1 1
No Yes Bordetella bronchiseptica RB50   2 2
No Yes Sphingobium sp. SYK-6   2 2
No Yes Rhodobacter sphaeroides ATCC 17029   1 1
No Yes Magnetospirillum magneticum AMB-1   2 2
No Yes Methylobacterium extorquens AM1   1 1
No Yes Ochrobactrum anthropi ATCC 49188   1 1
No Yes Hyphomicrobium denitrificans ATCC 51888   7 7
No Yes Nitrobacter hamburgensis X14   1 1
No Yes Methylomicrobium alcaliphilum   1 1
No Yes Pseudoxanthomonas suwonensis 11-1   1 1
No Yes Halothiobacillus neapolitanus c2   1 1
No Yes Proteus mirabilis HI4320   2 2
No Yes Edwardsiella ictaluri 93-146   1 1
No Yes Edwardsiella tarda EIB202   1 1
No Yes Yersinia enterocolitica subsp. enterocolitica 8081   2 2
No Yes Serratia sp. AS12   1 1
No Yes Serratia plymuthica AS9   1 1
No Yes Sodalis glossinidius str. 'morsitans'   2 2
No Yes Pantoea sp. At-9b   1 1
No Yes Erwinia pyrifoliae Ep1/96   1 1
No Yes Cronobacter turicensis z3032   1 1
No Yes Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)   2 2
No Yes Shigella sonnei Ss046   1 1
No Yes Shigella flexneri 5 str. 8401   1 1
No Yes Shigella dysenteriae Sd197   1 1
No Yes Klebsiella variicola At-22   1 1
No Yes Escherichia coli 'BL21-Gold(DE3)pLysS AG'   1 1
No Yes Thiomicrospira crunogena XCL-2   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 25 25
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 10 10
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 6 6
No Yes Ascaris suum Victoria/Ghent Pig roundworm 2 2
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 2 2
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 154 133
No Yes Hordeum vulgare 22 Domesticated barley 199 175
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 227 190
No Yes Propionibacterium acidipropionici ATCC 4875   1 1
No Yes Bifidobacterium bifidum PRL2010   1 1
No Yes [Eubacterium] cylindroides [Eubacterium] cylindroides T2-87   2 2
No Yes Clostridium difficile BI1   1 1
No Yes Clostridium difficile R20291   1 1
No Yes Clostridium difficile CD196   1 1
No Yes Clostridium saccharolyticum Clostridium cf. saccharolyticum K10   1 1
No Yes Coprococcus catus GD/7   1 1
No Yes Roseburia intestinalis XB6B4   1 1
No Yes Clostridium sp. SY8519   1 1
No Yes Clostridium pasteurianum BC1   1 1
No Yes Clostridium botulinum Ba4 str. 657   1 1
No Yes Enterococcus faecium Aus0085   2 2
No Yes Enterococcus faecalis str. Symbioflor 1   1 1
No Yes Enterococcus faecalis D32   1 1
No Yes Enterococcus faecalis OG1RF   1 1
No Yes Enterococcus faecalis V583   1 1
No Yes Lactobacillus reuteri SD2112   1 1
No Yes Streptococcus constellatus subsp. pharyngis C1050   2 2
No Yes Streptococcus constellatus subsp. pharyngis C818   1 1
No Yes Streptococcus constellatus subsp. pharyngis C232   1 1
No Yes Streptococcus intermedius C270   1 1
No Yes Streptococcus anginosus C238   2 2
No Yes Streptococcus gallolyticus subsp. gallolyticus ATCC 43143   1 1
No Yes Streptococcus lutetiensis 033   1 1
No Yes Streptococcus dysgalactiae subsp. equisimilis AC-2713   1 1
No Yes Streptococcus dysgalactiae subsp. equisimilis ATCC 12394   1 1
No Yes Streptococcus dysgalactiae subsp. equisimilis RE378   1 1
No Yes Streptococcus oligofermentans AS 1.3089   1 1
No Yes Streptococcus iniae SF1   1 1
No Yes Streptococcus pyogenes Alab49   1 1
No Yes Streptococcus pyogenes MGAS8232   1 1
No Yes Streptococcus pyogenes MGAS10394   1 1
No Yes Streptococcus pneumoniae A026   1 1
No Yes Streptococcus pneumoniae ST556   1 1
No Yes Streptococcus pneumoniae TCH8431/19A   1 1
No Yes Streptococcus pneumoniae CGSP14   2 2
No Yes Streptococcus pneumoniae Hungary19A-6   1 1
No Yes Streptococcus pneumoniae Taiwan19F-14   1 1
No Yes Streptococcus pneumoniae 670-6B   1 1
No Yes Streptococcus agalactiae ILRI112   1 1
No Yes Streptococcus agalactiae 09mas018883   1 1
No Yes Streptococcus agalactiae 2603V/R   1 1
No Yes Streptococcus mutans LJ23   1 1
No Yes Streptococcus mutans UA159   1 1
No Yes Streptococcus suis TL13   1 1
No Yes Streptococcus suis SC070731   1 1
No Yes Streptococcus suis JS14   1 1
No Yes Streptococcus suis BM407   2 2
No Yes Streptococcus suis SC84   1 1
No Yes Streptococcus suis GZ1   1 1
No Yes Streptococcus suis 98HAH33   1 1
No Yes Streptococcus suis 05ZYH33   1 1
No Yes Listeria monocytogenes N53-1   1 1
No Yes Listeria monocytogenes La111   1 1
No Yes Listeria monocytogenes SLCC2479   2 2
No Yes Listeria monocytogenes SLCC2540   1 1
No Yes Listeria monocytogenes serotype 1/2b str. SLCC2755   1 1
No Yes Listeria monocytogenes serotype 1/2c str. SLCC2372   3 3
No Yes Listeria monocytogenes serotype 7 str. SLCC2482   1 1
No Yes Listeria monocytogenes 08-5578   1 1
No Yes Listeria monocytogenes 08-5923   1 1
No Yes Listeria monocytogenes J0161   1 1
No Yes Listeria monocytogenes FSL R2-561   2 2
No Yes Listeria monocytogenes EGD-e   2 2
No Yes Staphylococcus aureus 08BA02176   1 1
No Yes Staphylococcus aureus subsp. aureus ED133   1 1
No Yes Staphylococcus aureus subsp. aureus S0385   1 1
No Yes Neisseria gonorrhoeae TCDC-NG08107   1 1
No Yes Neisseria gonorrhoeae FA 1090   1 1
No Yes Burkholderia sp. YI23   2 2
No Yes Burkholderia multivorans ATCC 17616   1 1
No Yes Burkholderia cepacia GG4   1 1
No Yes Bordetella pertussis CS   1 1
No Yes Bordetella parapertussis Bpp5   3 3
No Yes Bordetella bronchiseptica 253   1 1
No Yes Rhodobacter sphaeroides 2.4.1   2 2
No Yes Methylobacterium extorquens DM4   1 1
No Yes Sinorhizobium meliloti SM11   1 1
No Yes Rahnella aquatilis HX2   1 1
No Yes Serratia sp. AS13   1 1
No Yes Serratia marcescens WW4   1 1
No Yes Serratia liquefaciens ATCC 27592   1 1
No Yes Pectobacterium carotovorum subsp. carotovorum PCC21   1 1
No Yes Erwinia pyrifoliae DSM 12163   1 1
No Yes Cronobacter sakazakii SP291   1 1
No Yes Shigella sonnei 53G   2 2
No Yes Shigella flexneri 2002017   1 1
No Yes Shigella dysenteriae 1617   1 1
No Yes Salmonella enterica subsp. enterica serovar Javiana str. CFSAN001992   1 1
No Yes Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633   1 1
No Yes Salmonella enterica subsp. enterica Serovar Cubana str. CFSAN002050   1 1
No Yes Salmonella enterica subsp. enterica serovar Enteritidis str. P125109   1 1
No Yes Salmonella enterica subsp. enterica serovar Newport str. USMARC-S3124.1   2 2
No Yes Salmonella enterica subsp. enterica serovar Newport str. SL254   1 1
No Yes Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853   2 2
No Yes Salmonella enterica subsp. enterica serovar Typhimurium Definitive Type 104   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhi str. CT18   1 1
No Yes Salmonella enterica serovar Bovismorbificans genomics   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7   1 1
No Yes Salmonella enterica subsp. enterica serovar Pullorum str. S06004   1 1
No Yes Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. CDC1983-67   1 1
No Yes Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. RKS5078   1 1
No Yes Salmonella enterica subsp. enterica serovar Thompson str. RM6836   1 1
No Yes Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91   1 1
No Yes Klebsiella oxytoca KCTC 1686   1 1
No Yes Klebsiella pneumoniae KCTC 2242   2 2
No Yes Klebsiella pneumoniae 342   1 1
No Yes Klebsiella pneumoniae subsp. pneumoniae 1084   1 1
No Yes Klebsiella pneumoniae subsp. rhinoscleromatis SB3432   1 1
No Yes Escherichia coli E24377A   1 1
No Yes Escherichia coli APEC O78   1 1
No Yes Escherichia coli O7:K1 str. CE10   2 2
No Yes Escherichia coli O104:H4 str. 2009EL-2050   1 1
No Yes Escherichia coli O104:H4 str. 2009EL-2071   1 1
No Yes Escherichia coli O104:H4 str. 2011C-3493   1 1
No Yes Escherichia coli P12b   1 1
No Yes Escherichia coli 042   1 1
No Yes Escherichia coli Xuzhou21   1 1
No Yes Escherichia coli O83:H1 str. NRG 857C   2 2
No Yes Escherichia coli LF82   1 1
No Yes Escherichia coli UMN026   1 1
No Yes Escherichia coli 55989   1 1
No Yes Escherichia coli IAI1   1 1
No Yes Escherichia coli DH1   1 1
No Yes Escherichia coli DH1   1 1
No Yes Escherichia coli ATCC 8739   1 1
No Yes Escherichia coli BL21(DE3)   1 1
No Yes Escherichia coli BL21(DE3)   1 1
No Yes Escherichia coli ETEC H10407   1 1
No Yes Escherichia coli O55:H7 str. RM12579   1 1
No Yes Escherichia coli O55:H7 str. CB9615   1 1
No Yes Escherichia coli O26:H11 str. 11368   4 4
No Yes Escherichia coli O111:H- str. 11128   4 4
No Yes Escherichia coli O127:H6 str. E2348/69   5 5
No Yes Escherichia coli O157:H7 str. TW14359   1 1
No Yes Escherichia coli O157:H7 str. EC4115   1 1
No Yes Escherichia coli O157:H7 str. Sakai   1 1
No Yes Escherichia coli O157:H7 str. EDL933   1 1
No Yes Escherichia coli str. K-12 substr. MG1655   1 1
No Yes Escherichia coli str. K-12 substr. W3110   1 1
No Yes Escherichia coli B str. REL606   1 1
No Yes Enterobacter cloacae subsp. cloacae NCTC 9394   3 3
No Yes Enterobacter cloacae subsp. cloacae ATCC 13047   2 2
No Yes Pseudomonas putida H8234   1 1
No Yes Pseudomonas putida HB3267   1 1
No Yes Pseudomonas putida KT2440   1 1
No Yes Pseudomonas aeruginosa MTB-1   1 1
No Yes Pseudomonas aeruginosa LES431   3 3
No Yes Pseudomonas aeruginosa LESB58   4 4
No Yes Homo sapiens 75_37 (old version GRC) Human 62 62
No Yes Homo sapiens (NCBI version) Human 28 28
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 10 10
No Yes Heliconius numata (Incomplete)   2 2
No Yes Loa loa v3.3 (Request) Eye worm 2 2
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 2 2
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 2 2
No Yes Picea sitchensis (Incomplete) Sitka spruce 14 14
No Yes Lotus japonicus (Early assembly)   179 165
No Yes Malus x domestica (Duplicate) Apple 353 306
No Yes Ricinus communis (Early assembly) Castor bean 141 127
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   414 346
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 221 186
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 222 186
No Yes Phoenix dactylifera (Early draft) Date palm 44 35
No Yes Homo sapiens 69_37 Human 11 11
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 11 11
No Yes Gorilla gorilla 69_3.1 Western gorilla 14 14
No Yes Pongo abelii 69_2 Sumatran orangutan 11 11
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 11 11
No Yes Macaca mulatta 69_1 Rhesus monkey 10 10
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 10 10
No Yes Otolemur garnettii 69_3 Small-eared galago 11 11
No Yes Microcebus murinus 69_1 Gray mouse lemur 8 8
No Yes Rattus norvegicus 69_3.4 Norway rat 10 10
No Yes Mus musculus 69_38 House mouse 10 10
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 7 7
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 11 11
No Yes Cavia porcellus 69_3 Domestic guinea pig 11 11
No Yes Oryctolagus cuniculus 69_2 Rabbit 11 11
No Yes Ochotona princeps 69 American pika 9 9
No Yes Tupaia belangeri 69 Northern tree shrew 9 9
No Yes Sus scrofa 69_10.2 Pig 10 10
No Yes Bos taurus 69_3.1 Cattle 9 9
No Yes Vicugna pacos 69_1 Alpaca 7 7
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 11 11
No Yes Mustela putorius furo 69_1.0 Domestic ferret 10 10
No Yes Ailuropoda melanoleuca 69_1 Giant panda 11 11
No Yes Canis familiaris 69_3.1 Dog 10 10
No Yes Felis catus 69 Domestic cat 8 8
No Yes Equus caballus 69_2 Horse 11 11
No Yes Myotis lucifugus 69_2.0 Little brown bat 9 9
No Yes Pteropus vampyrus 69_1 Large flying fox 10 10
No Yes Sorex araneus 69_1 European shrew 6 6
No Yes Erinaceus europaeus 69 Western European hedgehog 8 8
No Yes Procavia capensis 69_1 Cape rock hyrax 8 8
No Yes Loxodonta africana 69_3 African savanna elephant 11 11
No Yes Echinops telfairi 69 Small Madagascar hedgehog 8 8
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 5 5
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 6 6
No Yes Macropus eugenii 69_1.0 Tammar wallaby 10 10
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 10 10
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 12 12
No Yes Ornithorhynchus anatinus 69_5 Platypus 8 8
No Yes Petromyzon marinus 69_7.0 Sea lamprey 5 5
No Yes Meleagris gallopavo 69_2 Turkey 6 6
No Yes Gallus gallus 69_2 Chicken 4 4
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 5 5
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 5 5
No Yes Anolis carolinensis 69_2.0 Green anole 9 9
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 11 11
No Yes Latimeria chalumnae 69_1 Coelacanth 11 11
No Yes Gadus morhua 69_1 Atlantic cod 9 9
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 9 9
No Yes Takifugu rubripes 69_4 Torafugu 9 9
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 11 11
No Yes Oryzias latipes 69_1 Japanese medaka 9 9
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 10 10
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 10 10
No Yes Danio rerio 69_9 Zebrafish 12 12
No Yes Ciona intestinalis 69 Vase tunicate 2 2
No Yes Drosophila melanogaster 69_5 Fruit fly 6 6
No Yes Caenorhabditis elegans 69_215 Roundworm 2 2
No Yes Arabidopsis thaliana 10 Thale cress 174 158
No Yes 1_050719N (meta-genome)   1 1
No Yes 4_050719Q (meta-genome)   1 1
No Yes 5_Below_upper_mesopelagic (meta-genome)   2 1
No Yes 6_Upper_euphotic (meta-genome)   1 1
No Yes 7_Oxygen_minimum_layer (meta-genome)   2 2
No Yes Activated sludge plasmid pool Morges-2009 (Newbler) (meta-genome)   1 1
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   5 5
No Yes Combined (meta-genome)   9 9
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   9 9
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   6 6
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   7 7
No Yes Dump bottom (Dump bottom) (meta-genome)   8 8
No Yes Dump top (Dump top) (meta-genome)   4 4
No Yes Endophytic microbiome from Rice (meta-genome)   3 3
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)   1 1
No Yes Fungus garden combined (combined) (meta-genome)   3 3
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   8 8
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   13 13
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 07(S) (meta-genome)   1 1
No Yes Human Gut Community Subject 7 (meta-genome)   4 4
No Yes Human Gut Community Subject 8 (meta-genome)   12 12
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   20 20
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   2 2
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   1 1
No Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome)   1 1
No Yes Mouse Gut Community lean2 (meta-genome)   1 1
No Yes Mouse Gut Community ob1 (meta-genome)   1 1
No Yes NCBI 2017_08 genome   63130 59377
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   6 6
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   1 1
No Yes Sludge/Australian, Phrap Assembly (meta-genome)   1 1
No Yes Sludge/US, Phrap Assembly (meta-genome)   1 1
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   8 8
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   4 4
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   2 2
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   2311 2071
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   4 4
No Yes Uniprot 2018_03 genome   36938 32516
No Yes Global Ocean Sampling Expedition (GOS)   210 157
No Yes NCBI plasmid sequences (Plasmids)   17 17
No Yes NCBI viral sequences (Viral)   166 165
No Yes PDB chains (SCOP 1.75) (PDB)   10 10
No Yes Protein Data Bank (all PDB sequenc)   71 71
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   84 84
No Yes TargetDB (Targets)   27 26
No Yes The Salmonella enterica Pan-genome (meta-genome)   15 15
No Yes UniProt viral sequences (Viral)   65 65

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