SUPERFAMILY 1.75 HMM library and genome assignments server

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EGF/Laminin superfamily domain assignments
in
Acyrthosiphon pisum

Assignment details

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Acyrthosiphon pisum has 185 significant domains in 35 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|193573519|ref|XP_001945353.1|   0.00000000804   2125-2164   EGF-type module  
  0.00000407   2086-2142   EGF-type module  
gi|193577841|ref|XP_001950469.1|   0.00000000000129   159-201   EGF-type module  
  0.00000073   425-467   EGF-type module  
  0.00000756   381-416   Merozoite surface protein 1 (MSP-1)  
  0.00000982   469-505   EGF-type module  
  0.0000185   196-237   EGF-type module  
  0.0000687   287-344   EGF-type module  
  0.000242   332-375   EGF-type module  
  0.0447   248-276   EGF-type module  
gi|193577845|ref|XP_001950566.1|   0.0000000000021   2003-2045   EGF-type module  
  0.00000583   2270-2310   EGF-type module  
  0.00000954   2312-2348   EGF-type module  
  0.0000164   2225-2260   Merozoite surface protein 1 (MSP-1)  
  0.0000298   2040-2081   EGF-type module  
  0.000136   2131-2188   EGF-type module  
  0.000952   2175-2219   EGF-type module  
  0.0839   2092-2120   EGF-type module  
gi|193584805|ref|XP_001949807.1|   0.00000479   399-433   EGF-type module  
  0.023   362-396   EGF-type module  
  0.0344   332-363   EGF-type module  
gi|193591755|ref|XP_001947059.1|   0.000000512   598-642   EGF-type module  
  0.0124   706-741   EGF-type module  
gi|193596414|ref|XP_001945971.1|   0.00000000000641   593-641   EGF-type module  
  0.000000000312   2068-2121   EGF-type module  
  0.000000000454   635-690   EGF-type module  
  0.00000000052   1705-1758   EGF-type module  
  0.00000000154   2227-2276   EGF-type module  
  0.00000000248   2504-2558   EGF-type module  
  0.00000000398   1860-1915   EGF-type module  
  0.0000000315   2112-2156   EGF-type module  
  0.000000074   1582-1629   EGF-type module  
  0.000000179   1901-1945   EGF-type module  
  0.000000272   2722-2760   EGF-type module  
  0.00000179   437-481   EGF-type module  
  0.00000234   2265-2300   EGF-type module  
  0.00000419   552-585   EGF-type module  
  0.00355   301-333   EGF-type module  
  0.0108   267-297   EGF-type module  
gi|193596476|ref|XP_001949722.1|   0.00000134   596-634   Integrin beta EGF-like domains  
  0.000156   643-683   Integrin beta EGF-like domains  
gi|193601326|ref|XP_001952865.1|   0.0000698   222-264   EGF-type module  
  0.00502   125-166   EGF-type module  
gi|193606167|ref|XP_001945977.1|   0.000000398   1346-1381   EGF-type module  
  0.00000176   1469-1517   Laminin-type module  
  0.0000226   2490-2539   Laminin-type module  
  0.0000527   1422-1469   Laminin-type module  
  0.00126   2413-2454   EGF-like domain of nidogen-1  
  0.00132   2578-2615   Laminin-type module  
gi|193610713|ref|XP_001950720.1|   0.000000677   1385-1417   EGF-type module  
  0.00000341   1308-1346   EGF-type module  
  0.1   1440-1464   Cripto EGF-like domain-like  
gi|193612999|ref|XP_001952565.1|   0.0000000761   123-166   EGF-type module  
  0.000000249   84-121   EGF-type module  
  0.00917   64-87   EGF-type module  
gi|193613174|ref|XP_001944083.1|   0.000000352   896-944   Laminin-type module  
  0.00544   188-215   Integrin beta EGF-like domains  
gi|193615575|ref|XP_001945047.1|   0.000000152   449-491   EGF-type module  
  0.000000387   257-291   EGF-type module  
  0.000158   192-226   EGF-type module  
  0.000181   408-445   EGF-type module  
  0.00148   365-403   EGF-type module  
  0.00182   146-187   EGF-type module  
  0.00355   222-256   EGF-type module  
  0.00387   291-333   EGF-type module  
  0.0168   59-87   EGF-type module  
  0.057   109-144   EGF-type module  
gi|193615577|ref|XP_001945110.1|   0.00000000168   251-298   EGF-type module  
  0.00000292   226-263   EGF-type module  
gi|193617692|ref|XP_001944472.1|   0.00000000000286   2-45   EGF-type module  
  0.000000000292   82-120   EGF-type module  
  0.000000914   685-719   EGF-type module  
  0.00000921   122-164   EGF-type module  
  0.0000108   42-86   EGF-type module  
  0.0000244   952-996   EGF-type module  
  0.00177   1220-1256   EGF-type module  
gi|193620130|ref|XP_001952607.1|   0.0000000292   650-688   EGF-type module  
  0.000000294   536-584   EGF-type module  
  0.00000102   756-798   EGF-type module  
  0.00000103   425-461   EGF-type module  
  0.0000474   706-761   EGF-type module  
  0.00133   518-543   EGF-type module  
gi|193620241|ref|XP_001947627.1|   0.000000000127   1401-1440   EGF-type module  
  0.00000711   2034-2074   Laminin-type module  
  0.0000342   1938-1977   EGF-type module  
  0.000539   1901-1936   EGF-type module  
gi|193629562|ref|XP_001950069.1|   0.00000000000467   386-429   EGF-type module  
  0.00000000000475   860-903   EGF-type module  
  0.0000000000168   626-669   EGF-type module  
  0.000000000268   348-390   EGF-type module  
  0.000000000475   309-353   EGF-type module  
  0.000000000896   937-980   EGF-type module  
  0.000000000921   1869-1906   EGF-type module  
  0.0000000015   1831-1869   EGF-type module  
  0.00000000219   898-942   EGF-type module  
  0.00000000536   269-313   EGF-type module  
  0.0000000126   1033-1080   EGF-type module  
  0.0000000185   1607-1642   EGF-type module  
  0.0000000196   673-711   EGF-type module  
  0.0000000267   187-227   EGF-type module  
  0.000000042   512-546   EGF-type module  
  0.000000256   464-503   EGF-type module  
  0.000000595   1950-1994   EGF-type module  
  0.00000196   232-266   EGF-type module  
  0.00000554   1796-1835   EGF-type module  
  0.0000126   1076-1114   EGF-type module  
  0.0000193   1994-2028   EGF-type module  
  0.0000209   2028-2066   EGF-type module  
  0.0000342   2068-2111   EGF-type module  
  0.0000589   424-457   EGF-type module  
  0.000419   1910-1951   EGF-type module  
  0.00949   975-994   EGF-type module  
gi|193641183|ref|XP_001948396.1|   0.000000000000811   771-814   EGF-type module  
  0.00000000000215   927-968   EGF-type module  
  0.000000000149   694-742   EGF-type module  
  0.000000000411   809-848   EGF-type module  
  0.000000000718   1165-1208   EGF-type module  
  0.00000000732   1323-1360   EGF-type module  
  0.00000000839   160-201   EGF-type module  
  0.0000000146   1402-1439   EGF-type module  
  0.0000000373   732-771   EGF-type module  
  0.0000000429   122-158   EGF-type module  
  0.0000000732   348-388   EGF-type module  
  0.00000157   1364-1400   EGF-type module  
  0.00000179   1138-1175   EGF-type module  
  0.00000554   74-120   EGF-type module  
  0.00000751   35-73   EGF-type module  
  0.0000324   390-427   EGF-type module  
  0.000211   849-886   EGF-type module  
  0.0873   549-575   EGF-type module  
gi|193652397|ref|XP_001951809.1|   0.000000036   272-306   EGF-type module  
  0.0381   172-198   EGF-type module  
  0.0559   235-270   EGF-type module  
  0.0947   48-70   EGF-type module  
gi|193654903|ref|XP_001951993.1|   0.000000000584   840-879   EGF-type module  
  0.0000184   801-857   EGF-type module  
gi|193659649|ref|XP_001944152.1|   0.0000018   220-256   EGF-type module  
  0.00000586   846-902   EGF-type module  
  0.0068   526-568   EGF-type module  
gi|193662013|ref|XP_001947857.1|   0.000000000000642   330-389   Laminin-type module  
  0.000000000809   387-443   Laminin-type module  
  0.0000000306   450-490   Laminin-type module  
gi|193664741|ref|XP_001943348.1|   0.000000000061   269-314   EGF-type module  
  0.000000000352   428-471   EGF-type module  
gi|193666944|ref|XP_001943623.1|   0.000000118   1013-1060   EGF-type module  
  0.000000139   937-976   EGF-type module  
  0.0028   977-1011   EGF-type module  
gi|193669401|ref|XP_001950530.1|   0.0000000142   675-727   Laminin-type module  
  0.0000000179   1398-1447   Laminin-type module  
  0.0000000391   1009-1057   Laminin-type module  
  0.0000000586   617-669   Laminin-type module  
  0.0000000628   149-204   Laminin-type module  
  0.000000134   866-907   Laminin-type module  
  0.000000276   914-962   Laminin-type module  
  0.00000134   818-859   Laminin-type module  
  0.00000977   337-374   Laminin-type module  
  0.0000187   770-810   Laminin-type module  
  0.0000195   732-772   Laminin-type module  
  0.0000195   1454-1502   Laminin-type module  
  0.0000502   1500-1547   Laminin-type module  
  0.000106   202-258   Laminin-type module  
  0.000148   272-324   Laminin-type module  
  0.00753   1068-1114   Laminin-type module  
gi|193672840|ref|XP_001949468.1|   0.000000000025   2351-2389   EGF-type module  
  0.000000000131   2041-2078   EGF-type module  
  0.00000000108   2156-2199   EGF-type module  
  0.00000000948   964-999   EGF-type module  
  0.0000000251   2386-2426   EGF-type module  
  0.000000141   2312-2355   EGF-type module  
  0.000000738   2120-2164   EGF-type module  
  0.00000155   2080-2123   EGF-type module  
  0.0000082   768-806   EGF-type module  
  0.00000949   2429-2463   EGF-type module  
  0.0000578   3372-3410   EGF-type module  
gi|193683408|ref|XP_001944333.1|   0.000000000837   750-801   Laminin-type module  
  0.00000000363   303-365   Laminin-type module  
  0.00000000586   853-901   Laminin-type module  
  0.00000000614   962-1003   Laminin-type module  
  0.000000114   466-521   Laminin-type module  
  0.000000162   908-959   Laminin-type module  
  0.0000106   419-468   Laminin-type module  
  0.0000151   805-855   Laminin-type module  
  0.0000391   363-421   Laminin-type module  
  0.000204   1010-1056   Laminin-type module  
  0.00502   712-752   EGF-type module  
gi|193688176|ref|XP_001946912.1|   0.0000000202   3010-3056   EGF-type module  
  0.000000251   1897-1948   EGF-type module  
  0.000000469   1566-1622   EGF-type module  
  0.000000988   1210-1254   EGF-type module  
  0.00000121   4567-4609   EGF-type module  
  0.0000184   3356-3413   EGF-type module  
  0.0000244   4375-4409   EGF-type module  
  0.0000288   2984-3021   EGF-type module  
  0.000547   1250-1291   EGF-type module  
  0.000656   2185-2233   EGF-type module  
  0.000838   4340-4374   EGF-type module  
  0.000839   845-890   EGF-type module  
  0.00244   4310-4342   EGF-type module  
  0.00592   4529-4563   EGF-type module  
  0.00645   3857-3890   EGF-type module  
  0.00908   2498-2550   EGF-type module  
  0.0276   4483-4521   EGF-type module  
  0.0277   4264-4305   EGF-type module  
gi|193690576|ref|XP_001944217.1|   0.00000000384   1344-1385   EGF-type module  
  0.0000539   3081-3112   EGF-type module  
  0.0016   1308-1349   EGF-type module  
  0.00284   2607-2666   EGF-type module  
gi|193700052|ref|XP_001945240.1|   0.00000000642   1267-1312   Laminin-type module  
  0.00000126   2992-3033   EGF-type module  
  0.0000502   930-980   Laminin-type module  
  0.0000503   980-1026   Laminin-type module  
  0.000207   3257-3299   EGF-type module  
  0.00136   1232-1269   EGF-type module  
  0.00279   1321-1371   Laminin-type module  
  0.0088   863-889   EGF-type module  
gi|193702231|ref|XP_001944339.1|   0.00000765   19-64   Merozoite surface protein 1 (MSP-1)  
gi|193702351|ref|XP_001949887.1|   0.00000363   579-617   Integrin beta EGF-like domains  
  0.000265   626-666   Integrin beta EGF-like domains  
  0.0921   545-579   Integrin beta EGF-like domains  
gi|193709368|ref|XP_001949708.1|   0.000000000112   1372-1420   Laminin-type module  
  0.000000000446   1463-1513   Laminin-type module  
  0.0000000024   543-591   Laminin-type module  
  0.00000000335   1908-1962   Laminin-type module  
  0.0000000279   277-326   Laminin-type module  
  0.0000000642   1800-1852   Laminin-type module  
  0.000000067   497-545   Laminin-type module  
  0.0000000753   1858-1910   Laminin-type module  
  0.000000112   634-681   Laminin-type module  
  0.000000181   734-784   Laminin-type module  
  0.00000265   589-636   Laminin-type module  
  0.00000271   451-499   Laminin-type module  
  0.00000446   1511-1559   Laminin-type module  
  0.00000865   787-826   Laminin-type module  
  0.00000977   679-731   Laminin-type module  
  0.0000265   336-391   Laminin-type module  
  0.0000391   1765-1802   Laminin-type module  
  0.0000558   1418-1460   Laminin-type module  
  0.0000586   406-453   Laminin-type module  
  0.000229   1961-2002   Laminin-type module  
gi|193712529|ref|XP_001943895.1|   0.00000000287   457-491   EGF-type module  
  0.0000000594   417-455   EGF-type module  
  0.0000000921   494-536   EGF-type module  
  0.000000331   280-322   EGF-type module  
  0.00000035   538-572   EGF-type module  
  0.00000594   369-420   EGF-type module  
  0.00000955   330-366   EGF-type module  
 
Weak hits:
gi|193573517|ref|XP_001946176.1|   0.0142   82-105   Follistatin (FS) module N-terminal domain, FS-N  
gi|193577857|ref|XP_001944396.1|   0.00628   214-245   EGF-type module  
gi|193591718|ref|XP_001943486.1|   0.00182   335-373   EGF-type module  
gi|193591815|ref|XP_001944019.1|   0.0173   10-51   Laminin-type module  
gi|193596671|ref|XP_001946647.1|   0.000531   324-356   EGF-type module  
gi|193599248|ref|XP_001950234.1|   0.0113   1309-1361   EGF-type module  
  0.0406   796-837   EGF-type module  
gi|193603522|ref|XP_001945868.1|   0.000698   149-200   EGF-type module  
gi|193617843|ref|XP_001948568.1|   0.00352   313-345   EGF-type module  
gi|193622498|ref|XP_001950908.1|   0.00197   386-429   EGF-type module  
gi|193627143|ref|XP_001942552.1|   0.00326   240-285   Laminin-type module  
  0.0816   197-242   Laminin-type module  
gi|193627161|ref|XP_001946493.1|   0.000132   105-138   EGF-type module  
gi|193627503|ref|XP_001944803.1|   0.000488   298-335   EGF-type module  
  0.00576   32-66   EGF-type module  
  0.0089   136-168   EGF-type module  
gi|193629681|ref|XP_001945053.1|   0.00184   503-536   EGF-type module  
gi|193634158|ref|XP_001946950.1|   0.00921   30-77   Laminin-type module  
  0.0586   206-251   EGF-type module  
  0.0762   164-208   Laminin-type module  
gi|193643559|ref|XP_001946829.1|   0.0134   187-228   EGF-type module  
  0.0436   161-185   Integrin beta EGF-like domains  
gi|193645797|ref|XP_001952736.1|   0.00419   643-685   Integrin beta EGF-like domains  
gi|193652646|ref|XP_001943342.1|   0.000435   322-349   EGF-type module  
gi|193690665|ref|XP_001948462.1|   0.00335   256-290   EGF-like domain of nidogen-1  
  0.00443   51-97   EGF-type module  
  0.0419   20-57   EGF-like domain of nidogen-1  
gi|193695128|ref|XP_001945083.1|   0.00106   813-837   EGF-type module  
  0.0012   782-805   EGF-type module  
  0.00658   717-740   Integrin beta EGF-like domains  
  0.0134   912-937   Integrin beta EGF-like domains  
  0.0144   746-772   Integrin beta EGF-like domains  
  0.0778   882-907   Integrin beta EGF-like domains  

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Select to display   Genome       Domains   Proteins
No Yes ALL   719145 719145
No Yes Homo sapiens 76_38 Human 1736 621
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 532 163
No Yes Gorilla gorilla 76_3.1 Western gorilla 876 233
No Yes Pongo abelii 76_2 Sumatran orangutan 539 174
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 555 171
No Yes Papio anubis 76 Olive baboon 634 191
No Yes Macaca mulatta 76_1 Rhesus monkey 925 318
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 1183 386
No Yes Otolemur garnettii 76_3 Small-eared galago 551 171
No Yes Microcebus murinus 76_1 Gray mouse lemur 455 139
No Yes Rattus norvegicus 76_5.0 Norway rat 613 207
No Yes Mus musculus 76_38 House mouse 1015 344
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 515 145
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 529 164
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 521 161
No Yes Cavia porcellus 76_3 Domestic guinea pig 580 173
No Yes Oryctolagus cuniculus 76_2 Rabbit 478 160
No Yes Ochotona princeps 76 American pika 469 142
No Yes Tupaia belangeri 76 Northern tree shrew 407 132
No Yes Sus scrofa 76_10.2 Pig 585 211
No Yes Bos taurus 76_3.1 Cattle 632 189
No Yes Ovis aries 76_3.1 Sheep 602 193
No Yes Vicugna pacos 76_1 Alpaca 260 102
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 526 156
No Yes Mustela putorius furo 76_1.0 Domestic ferret 583 186
No Yes Ailuropoda melanoleuca 76_1 Giant panda 634 192
No Yes Canis familiaris 76_3.1 Dog 761 226
No Yes Felis catus 76_6.2 Domestic cat 592 185
No Yes Equus caballus 76_2 Horse 806 230
No Yes Myotis lucifugus 76_2.0 Little brown bat 502 169
No Yes Pteropus vampyrus 76_1 Large flying fox 529 164
No Yes Sorex araneus 76_1 European shrew 286 102
No Yes Erinaceus europaeus 76 Western European hedgehog 383 118
No Yes Procavia capensis 76_1 Cape rock hyrax 460 149
No Yes Loxodonta africana 76_3 African savanna elephant 690 216
No Yes Echinops telfairi 76 Small Madagascar hedgehog 391 135
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 616 199
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 271 99
No Yes Macropus eugenii 76_1.0 Tammar wallaby 454 139
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 621 199
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 616 176
No Yes Ornithorhynchus anatinus 76_5 Platypus 511 184
No Yes Saccoglossus kowalevskii v3.0   3261 466
No Yes Petromyzon marinus 76_7.0 Sea lamprey 221 94
No Yes Meleagris gallopavo 76_2 Turkey 509 175
No Yes Gallus gallus 76_4 Chicken 523 155
No Yes Anas platyrhynchos 76_1.0 Mallard 519 172
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 513 170
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 533 157
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 592 196
No Yes Anolis carolinensis 76_2.0 Green anole 539 160
No Yes Xenopus laevis African clawed frog 514 207
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 694 186
No Yes Latimeria chalumnae 76_1 Coelacanth 738 218
No Yes Lepisosteus oculatus 76 Spotted gar 888 241
No Yes Gadus morhua 76_1 Atlantic cod 618 198
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 995 299
No Yes Takifugu rubripes 76_4 Torafugu 2323 723
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 771 242
No Yes Oryzias latipes 76_1 Japanese medaka 740 228
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 627 196
No Yes Poecilia formosa 76 Amazon molly 687 203
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 1051 282
No Yes Astyanax mexicanus 76 Mexican tetra 752 239
No Yes Danio rerio 76_9 Zebrafish 1139 389
No Yes Oikopleura dioica   459 149
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 1671 332
No Yes Ciona intestinalis 76 Vase tunicate 438 155
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 2661 612
No Yes Adineta vaga   1146 278
No Yes Octopus bimaculoides 280   748 217
No Yes Crassostrea gigas 22 Pacific oyster 874 287
No Yes Lottia gigantea Owl limpet 627 164
No Yes Helobdella robusta   407 130
No Yes Capitella sp. I   916 309
No Yes Danaus plexippus OGS1.0 Monarch butterfly 197 52
No Yes Heliconius melpomene Postman butterfly 184 46
No Yes Bombyx mori Domestic silkworm 149 65
No Yes Nasonia vitripennis Jewel wasp 168 39
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 745 159
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 213 49
No Yes Linepithema humile v1.1 Argentine ant 160 66
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 182 59
No Yes Solenopsis invicta v.2.2.3 Red fire ant 111 54
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 220 46
No Yes Atta cephalotes v1.1   189 65
No Yes Camponotus floridanus v3.3 Florida carpenter ant 206 46
No Yes Lucilia cuprina Australian sheep blowfly 189 47
No Yes Drosophila grimshawi 1.3   235 55
No Yes Drosophila willistoni 1.3   203 47
No Yes Drosophila pseudoobscura 2.13   219 52
No Yes Drosophila persimilis 1.3   189 52
No Yes Drosophila suzukii   233 53
No Yes Drosophila yakuba 1.3   214 47
No Yes Drosophila simulans 1.3   145 43
No Yes Drosophila sechellia 1.3   187 41
No Yes Drosophila melanogaster 76_5 Fruit fly 696 152
No Yes Drosophila erecta 1.3   215 44
No Yes Drosophila ananassae 1.3   210 48
No Yes Drosophila virilis 1.2   216 49
No Yes Drosophila mojavensis 1.3   212 46
No Yes Megaselia scalaris 22   77 32
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 222 54
No Yes Culex pipiens quinquefasciatus Southern house mosquito 204 55
No Yes Anopheles darlingi 22 American malaria mosquito 125 29
No Yes Anopheles gambiae 49_3j African malaria mosquito 196 51
No Yes Tribolium castaneum 3.0 Red flour beetle 229 58
No Yes Pediculus humanus corporis (Early assembly) Human body louse 220 55
No Yes Acyrthosiphon pisum Pea aphid 185 35
No Yes Rhodnius prolixus 22   183 44
No Yes Daphnia pulex Common water flea 256 74
No Yes Strigamia maritima 22   230 60
No Yes Sarcoptes scabiei   166 48
No Yes Tetranychus urticae Two-spotted spider mite 224 64
No Yes Ixodes scapularis (Preliminary) Black-legged tick 156 55
No Yes Pristionchus pacificus   229 96
No Yes Meloidogyne incognita Southern root-knot nematode 119 42
No Yes Meloidogyne hapla   76 37
No Yes Onchocerca volvulus 22   185 53
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 433 107
No Yes Caenorhabditis japonica   193 64
No Yes Caenorhabditis brenneri   302 105
No Yes Caenorhabditis remanei   276 100
No Yes Caenorhabditis elegans 76_235 Roundworm 528 152
No Yes Caenorhabditis briggsae 2   242 82
No Yes Trichinella spiralis 22   313 92
No Yes Hymenolepis microstoma   122 36
No Yes Echinococcus multilocularis   133 38
No Yes Echinococcus granulosus   126 38
No Yes Taenia solium Pork tapeworm 127 41
No Yes Schistosoma mansoni   123 45
No Yes Mnemiopsis leidyi Sea walnut 178 50
No Yes Thelohanellus kitauei   26 25
No Yes Acropora digitifera v1.0   831 347
No Yes Nematostella vectensis 1.0 Starlet sea anemone 1039 372
No Yes Hydra vulgaris   350 115
No Yes Amphimedon queenslandica   433 151
No Yes Trichoplax adhaerens   574 125
No Yes Proterospongia sp. ATCC 50818   129 59
No Yes Monosiga brevicollis   53 30
No Yes Sphaeroforma arctica JP610   120 34
No Yes Capsaspora owczarzaki ATCC 30864   28 22
No Yes Amorphotheca resinae v1.0 Creosote fungus 1 1
No Yes Didymella exigua CBS 183.55 v1.0   1 1
No Yes Trichophyton verrucosum HKI 0517   1 1
No Yes Arthroderma benhamiae CBS 112371   1 1
No Yes Trichophyton tonsurans CBS 112818   1 1
No Yes Trichophyton rubrum CBS 118892   1 1
No Yes Penicillium chrysogenum Wisconsin 54-1255   1 1
No Yes Penicillium chrysogenum v1.0   1 1
No Yes Aspergillus terreus NIH2624   1 1
No Yes Aspergillus flavus NRRL3357   1 1
No Yes Yarrowia lipolytica CLIB122   1 1
No Yes Spizellomyces punctatus DAOM BR117   1 1
No Yes Dictyostelium discoideum   19 9
No Yes Dictyostelium purpureum   9 6
No Yes Pinus taeda Loblolly pine 1 1
No Yes Picea abies Norway spruce 1 1
No Yes Eucalyptus grandis v201 Rose gum 17 17
No Yes Theobroma cacao B97-61/B2 v1 Cacao 6 6
No Yes Gossypium raimondii v221   17 17
No Yes Citrus clementina v165   4 4
No Yes Citrus sinensis v154 Sweet orange 10 10
No Yes Thellungiella halophila v173   3 3
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 11 11
No Yes Capsella rubella v183   6 6
No Yes Arabidopsis lyrata Lyrate rockcress 4 4
No Yes Arabidopsis thaliana 10 Thale cress 5 5
No Yes Carica papaya Papaya 4 4
No Yes Medicago truncatula Barrel medic 18 18
No Yes Phaseolus vulgaris v186 French bean 8 8
No Yes Glycine max v109 Soybean 12 12
No Yes Cucumis sativus v122 Cucumber 6 5
No Yes Fragaria vesca Wild strawberry 15 13
No Yes Malus domestica v196 Apple 25 25
No Yes Prunus persica v139 Peach 11 11
No Yes Linum usitatissimum v200 Flax 1 1
No Yes Populus trichocarpa v156 Black cottonwood 10 10
No Yes Vitis vinifera Wine grape 19 12
No Yes Mimulus guttatus v140 Spotted monkey flower 2 2
No Yes Solanum lycopersicum v.2.3 Tomato 6 6
No Yes Solanum tuberosum Potato 20 20
No Yes Actinidia chinensis Hongyang   5 5
No Yes Aquilegia coerulea v195   14 14
No Yes Triticum urartu 22   42 42
No Yes Triticum aestivum 22 Bread wheat 122 122
No Yes Aegilops tauschii 22   64 64
No Yes Brachypodium distachyon Stiff brome 26 25
No Yes Oryza barthii 22 African wild rice 59 49
No Yes Oryza meridionalis 22   53 44
No Yes Oryza glumaepatula 22   66 64
No Yes Oryza glaberrima African rice 31 31
No Yes Oryza punctata 22   44 41
No Yes Oryza nivara 22   56 52
No Yes Oryza brachyantha 22 Malo sina 38 38
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 50 49
No Yes Oryza sativa v193 Rice 51 50
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 16 16
No Yes Panicum virgatum v202 Switchgrass 77 76
No Yes Setaria italica v164 Foxtail millet 40 40
No Yes Zea mays subsp. mays Maize 18 17
No Yes Zea mays v181 Maize 20 19
No Yes Sorghum bicolor Sorghum 26 26
No Yes Musa balbisiana Balbis banana 14 13
No Yes Musa acuminata 22 Wild Malaysian banana 29 26
No Yes Amborella trichopoda 22   4 4
No Yes Physcomitrella patens   2 2
No Yes Coccomyxa subellipsoidea sp. C-169 v2   4 4
No Yes Asterochloris sp. Cgr/DA1pho v1.0   2 2
No Yes Chlorella variabilis sp. NC64A   7 6
No Yes Chlorella vulgaris   5 5
No Yes Volvox carteri f. nagariensis   2 2
No Yes Volvox carteri v199   1 1
No Yes Chlamydomonas reinhardtii 4.0   5 5
No Yes Ostreococcus lucimarinus CCE9901   4 4
No Yes Ostreococcus tauri   2 2
No Yes Bathycoccus prasinos   4 4
No Yes Micromonas sp. RCC299   3 2
No Yes Micromonas pusilla CCMP1545 v3.0   1 1
No Yes Thecamonas trahens ATCC 50062   1 1
No Yes Bigelowiella natans CCMP2755 22   18 12
No Yes Giardia lamblia 2.3   26 14
No Yes Cyanophora paradoxa   4 4
No Yes Ectocarpus siliculosus   10 9
No Yes Albugo laibachii 22   3 3
No Yes Pythium iwayamai DAOM BR242034 22   4 4
No Yes Pythium arrhenomanes ATCC 12531 22   7 6
No Yes Pythium ultimum v1.7-2   2 2
No Yes Pythium aphanidermatum DAOM BR444 22   5 4
No Yes Pythium irregulare DAOM BR486 22   2 2
No Yes Pythium vexans DAOM BR484 22   1 1
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 3 3
No Yes Phaeodactylum tricornutumCCAP 1055/1   6 4
No Yes Fragilariopsis cylindrus   14 10
No Yes Thalassiosira pseudonana CCMP1335   6 4
No Yes Perkinsus marinus ATCC 50983   3 3
No Yes Paramecium tetraurelia   10 10
No Yes Tetrahymena thermophila SB210 1   4 4
No Yes Ichthyophthirius multifiliis strain G5   1 1
No Yes Cryptosporidium hominis   7 6
No Yes Cryptosporidium muris   13 7
No Yes Cryptosporidium parvum Iowa II   12 7
No Yes Neospora caninum   12 7
No Yes Toxoplasma gondii VEG   12 6
No Yes Toxoplasma gondii ME49   14 8
No Yes Toxoplasma gondii GT1   8 5
No Yes Babesia bovis T2Bo   4 2
No Yes Theileria parva   1 1
No Yes Plasmodium falciparum 3D7   10 7
No Yes Plasmodium vivax SaI-1 7.0   12 8
No Yes Plasmodium knowlesi strain H   13 9
No Yes Plasmodium yoelii ssp. yoelii 1   8 5
No Yes Plasmodium chabaudi   9 6
No Yes Plasmodium berghei ANKA   10 6
No Yes Symbiodinium minutum clade B1 v1.2   10 7
No Yes Naegleria gruberi   15 13
No Yes Guillardia theta CCMP2712 v1.0   24 18
No Yes Emiliania huxleyi CCMP1516   3 3
No Yes Haliscomenobacter hydrossis DSM 1100   1 1
No Yes Odoribacter splanchnicus DSM 20712   1 1
No Yes Haliangium ochraceum DSM 14365   1 1
No Yes Stigmatella aurantiaca DW4/3-1   1 1
No Yes Myxococcus xanthus DK 1622   1 1
No Yes Myxococcus fulvus HW-1   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 774 252
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 393 99
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 218 56
No Yes Ascaris suum Victoria/Ghent Pig roundworm 227 76
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 360 114
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 6 6
No Yes Hordeum vulgare 22 Domesticated barley 56 56
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 42 42
No Yes Neospora caninum Nc-Liverpool 6.2   12 7
No Yes Plasmodium falciparum HB3   9 6
No Yes Plasmodium falciparum Dd2   6 4
No Yes Myxococcus stipitatus DSM 14675   2 2
No Yes Homo sapiens 75_37 (old version GRC) Human 1814 677
No Yes Homo sapiens (NCBI version) Human 877 288
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 556 169
No Yes Heliconius numata (Incomplete)   14 9
No Yes Loa loa v3.3 (Request) Eye worm 185 61
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 186 80
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 169 51
No Yes Picea sitchensis (Incomplete) Sitka spruce 1 1
No Yes Lotus japonicus (Early assembly)   3 3
No Yes Malus x domestica (Duplicate) Apple 25 25
No Yes Ricinus communis (Early assembly) Castor bean 5 5
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   4 4
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 6 6
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 6 6
No Yes Phoenix dactylifera (Early draft) Date palm 4 4
No Yes Homo sapiens 69_37 Human 710 195
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 517 157
No Yes Gorilla gorilla 69_3.1 Western gorilla 571 161
No Yes Pongo abelii 69_2 Sumatran orangutan 519 168
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 495 156
No Yes Macaca mulatta 69_1 Rhesus monkey 556 172
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 578 165
No Yes Otolemur garnettii 69_3 Small-eared galago 549 170
No Yes Microcebus murinus 69_1 Gray mouse lemur 455 139
No Yes Rattus norvegicus 69_3.4 Norway rat 574 173
No Yes Mus musculus 69_38 House mouse 554 169
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 513 143
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 502 156
No Yes Cavia porcellus 69_3 Domestic guinea pig 558 163
No Yes Oryctolagus cuniculus 69_2 Rabbit 463 150
No Yes Ochotona princeps 69 American pika 469 142
No Yes Tupaia belangeri 69 Northern tree shrew 407 132
No Yes Sus scrofa 69_10.2 Pig 467 164
No Yes Bos taurus 69_3.1 Cattle 558 165
No Yes Vicugna pacos 69_1 Alpaca 260 102
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 526 156
No Yes Mustela putorius furo 69_1.0 Domestic ferret 565 183
No Yes Ailuropoda melanoleuca 69_1 Giant panda 551 166
No Yes Canis familiaris 69_3.1 Dog 552 165
No Yes Felis catus 69 Domestic cat 380 133
No Yes Equus caballus 69_2 Horse 546 178
No Yes Myotis lucifugus 69_2.0 Little brown bat 472 160
No Yes Pteropus vampyrus 69_1 Large flying fox 525 162
No Yes Sorex araneus 69_1 European shrew 286 102
No Yes Erinaceus europaeus 69 Western European hedgehog 383 118
No Yes Procavia capensis 69_1 Cape rock hyrax 458 148
No Yes Loxodonta africana 69_3 African savanna elephant 526 165
No Yes Echinops telfairi 69 Small Madagascar hedgehog 391 135
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 322 125
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 267 97
No Yes Macropus eugenii 69_1.0 Tammar wallaby 454 139
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 491 158
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 567 166
No Yes Ornithorhynchus anatinus 69_5 Platypus 452 168
No Yes Petromyzon marinus 69_7.0 Sea lamprey 203 84
No Yes Meleagris gallopavo 69_2 Turkey 471 152
No Yes Gallus gallus 69_2 Chicken 516 150
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 494 162
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 497 161
No Yes Anolis carolinensis 69_2.0 Green anole 510 157
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 553 156
No Yes Latimeria chalumnae 69_1 Coelacanth 639 183
No Yes Gadus morhua 69_1 Atlantic cod 547 170
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 693 221
No Yes Takifugu rubripes 69_4 Torafugu 677 202
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 659 191
No Yes Oryzias latipes 69_1 Japanese medaka 656 187
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 627 196
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 749 202
No Yes Danio rerio 69_9 Zebrafish 769 240
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 523 112
No Yes Ciona intestinalis 69 Vase tunicate 408 143
No Yes Drosophila melanogaster 69_5 Fruit fly 218 50
No Yes Caenorhabditis elegans 69_215 Roundworm 241 74
No Yes Arabidopsis thaliana 10 Thale cress 5 5
No Yes 1_050719N (meta-genome)   1 1
No Yes 3_Below_base_of_euphotic (meta-genome)   2 1
No Yes 7_Oxygen_minimum_layer (meta-genome)   1 1
No Yes Activated sludge plasmid pool Morges-2009 (Newbler) (meta-genome)   1 1
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   1 1
No Yes Combined (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Endophytic microbiome from Rice (meta-genome)   2 2
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   2 2
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   2 1
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   2 1
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   2 2
No Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome)   1 1
No Yes NCBI 2017_08 genome   302166 90591
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes Protozoadb 2010_08 (Protozoadb)   242 149
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   13 7
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   6 3
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   6 3
No Yes STRING v9.0.5 (STRING)   25827 7909
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   1 1
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   2 1
No Yes Uniprot 2018_03 genome   214533 69342
No Yes Global Ocean Sampling Expedition (GOS)   425 226
No Yes NCBI viral sequences (Viral)   27 26
No Yes PDB chains (SCOP 1.75) (PDB)   117 88
No Yes Protein Data Bank (all PDB sequenc)   1179 857
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   2437 2434
No Yes TargetDB (Targets)   486 191
No Yes UniProt viral sequences (Viral)   82 69

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