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  Home > Genomes > Drosophila melanogaster FlyBase 5.12 > Complement control module/SCR domain domains


Complement control module/SCR domain superfamily domain assignments
in
Drosophila melanogaster FlyBase 5.12

Assignment details

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Drosophila melanogaster FlyBase 5.12 (FlyBase) has 155 significant domains in 34 proteins.

     

Sequence ID   Evalue   Region   Family  
FBpp0073424   1.81e-16   524-592   Complement control module/SCR domain  
  0.0000000000000025   407-472   Complement control module/SCR domain  
  0.00000000000000278   899-968   Complement control module/SCR domain  
  0.00000000000000877   641-710   Complement control module/SCR domain  
  0.0000000000000153   952-1015   Complement control module/SCR domain  
  0.0000000000000403   840-904   Complement control module/SCR domain  
  0.0000000000000431   576-640   Complement control module/SCR domain  
  0.0000000000000612   464-534   Complement control module/SCR domain  
  0.00000000000027   795-850   Complement control module/SCR domain  
  0.00000000000723   699-767   Complement control module/SCR domain  
  0.000000114   57-112   Complement control module/SCR domain  
FBpp0073843   0.0000000000000167   380-449   Complement control module/SCR domain  
  0.0000000000000208   433-497   Complement control module/SCR domain  
  0.000000000000528   493-557   Complement control module/SCR domain  
  0.000000000264   37-92   Complement control module/SCR domain  
FBpp0076517   0.0000000021   339-414   Complement control module/SCR domain  
  0.00000236   48-109   Complement control module/SCR domain  
  0.000806   403-458   Complement control module/SCR domain  
FBpp0076518   0.0000000021   339-414   Complement control module/SCR domain  
  0.00000236   48-109   Complement control module/SCR domain  
  0.000806   403-458   Complement control module/SCR domain  
FBpp0077155   0.0000278   76-133   Complement control module/SCR domain  
  0.0000612   26-79   Complement control module/SCR domain  
FBpp0077156   0.0000000131   22-86   Complement control module/SCR domain  
  0.0000000278   70-126   Complement control module/SCR domain  
FBpp0077249   0.000001   66-122   Complement control module/SCR domain  
  0.00000945   30-82   Complement control module/SCR domain  
FBpp0078982   5.28e-16   674-745   Complement control module/SCR domain  
  0.00000000000000723   1050-1114   Complement control module/SCR domain  
  0.00000000153   612-675   Complement control module/SCR domain  
  0.00000000222   728-792   Complement control module/SCR domain  
  0.00000264   551-623   Complement control module/SCR domain  
  0.0000236   1186-1254   Complement control module/SCR domain  
  0.000667   1250-1296   Complement control module/SCR domain  
  0.0737   2883-2938   Complement control module/SCR domain  
FBpp0080818   4.73e-18   305-374   Complement control module/SCR domain  
  0.00000000000000306   1522-1583   Complement control module/SCR domain  
  0.00000000000167   1585-1642   Complement control module/SCR domain  
  0.0000000000153   240-302   Complement control module/SCR domain  
  0.0000000000306   178-254   Complement control module/SCR domain  
  0.0000000000306   1486-1537   Complement control module/SCR domain  
  0.0000000000389   357-421   Complement control module/SCR domain  
  0.000000000167   121-176   Complement control module/SCR domain  
  0.000000000445   1405-1470   Complement control module/SCR domain  
  0.0000000114   516-584   Complement control module/SCR domain  
  0.000000057   574-648   Complement control module/SCR domain  
  0.000025   933-982   Complement control module/SCR domain  
  0.0000514   468-517   Complement control module/SCR domain  
  0.000153   1010-1056   Complement control module/SCR domain  
  0.00278   1156-1220   Complement control module/SCR domain  
  0.00486   1246-1288   Complement control module/SCR domain  
FBpp0080819   3.61e-18   305-374   Complement control module/SCR domain  
  0.0000000000118   240-302   Complement control module/SCR domain  
  0.0000000000236   178-254   Complement control module/SCR domain  
  0.0000000000306   357-421   Complement control module/SCR domain  
  0.000000000128   121-176   Complement control module/SCR domain  
  0.0000000089   516-584   Complement control module/SCR domain  
  0.0000000459   574-648   Complement control module/SCR domain  
  0.0000195   933-982   Complement control module/SCR domain  
  0.0000403   468-517   Complement control module/SCR domain  
  0.000126   1011-1056   Complement control module/SCR domain  
  0.00208   1156-1220   Complement control module/SCR domain  
  0.00375   1246-1288   Complement control module/SCR domain  
FBpp0081098   0.0000175   154-214   Complement control module/SCR domain  
  0.000197   94-146   Complement control module/SCR domain  
FBpp0082798   0.0000000195   243-287   Complement control module/SCR domain  
FBpp0085140   0.00000000118   1118-1169   Complement control module/SCR domain  
FBpp0085141   0.00000000118   1118-1169   Complement control module/SCR domain  
FBpp0086768   0.000000876   196-259   Complement control module/SCR domain  
FBpp0087112   0.00000000959   22-86   Complement control module/SCR domain  
  0.000000032   70-126   Complement control module/SCR domain  
FBpp0087687   5.7e-16   805-878   Complement control module/SCR domain  
  0.00000000000153   688-751   Complement control module/SCR domain  
  0.00000000000688   868-928   Complement control module/SCR domain  
  0.000000000135   769-816   Complement control module/SCR domain  
  0.000297   508-573   Complement control module/SCR domain  
FBpp0087688   5.84e-16   830-903   Complement control module/SCR domain  
  0.00000000000167   713-776   Complement control module/SCR domain  
  0.00000000000715   893-953   Complement control module/SCR domain  
  0.000000000139   794-841   Complement control module/SCR domain  
  0.00148   558-598   Complement control module/SCR domain  
FBpp0087689   0.00000000000000123   799-866   Complement control module/SCR domain  
  0.00000000000139   688-751   Complement control module/SCR domain  
  0.00000000201   741-804   Complement control module/SCR domain  
  0.00027   508-573   Complement control module/SCR domain  
FBpp0100157   0.00000000000000128   824-891   Complement control module/SCR domain  
  0.00000000000153   713-776   Complement control module/SCR domain  
  0.00000000229   766-829   Complement control module/SCR domain  
  0.00135   558-598   Complement control module/SCR domain  
FBpp0111718   1.03e-16   105-173   Complement control module/SCR domain  
  0.00000000000000153   480-549   Complement control module/SCR domain  
  0.00000000000000499   222-291   Complement control module/SCR domain  
  0.00000000000000931   533-596   Complement control module/SCR domain  
  0.0000000000000236   421-485   Complement control module/SCR domain  
  0.000000000000025   157-221   Complement control module/SCR domain  
  0.0000000000000486   45-115   Complement control module/SCR domain  
  0.000000000000162   376-431   Complement control module/SCR domain  
  0.00000000000445   280-348   Complement control module/SCR domain  
  0.0000000000101   3-53   Complement control module/SCR domain  
FBpp0111897   0.0000000000000208   380-449   Complement control module/SCR domain  
  0.0000000000000264   433-497   Complement control module/SCR domain  
  0.000000000000667   493-557   Complement control module/SCR domain  
  0.000000000334   37-92   Complement control module/SCR domain  
FBpp0288558   5.28e-16   674-745   Complement control module/SCR domain  
  0.00000000000000723   1050-1114   Complement control module/SCR domain  
  0.00000000153   612-675   Complement control module/SCR domain  
  0.00000000222   728-792   Complement control module/SCR domain  
  0.00000264   551-623   Complement control module/SCR domain  
  0.0000236   1186-1254   Complement control module/SCR domain  
  0.000667   1250-1296   Complement control module/SCR domain  
  0.0737   2883-2938   Complement control module/SCR domain  
FBpp0288716   0.000000000264   1109-1175   Complement control module/SCR domain  
  0.00000751   1181-1236   Complement control module/SCR domain  
  0.0000514   58-115   Complement control module/SCR domain  
FBpp0288794   0.00000000000278   178-254   Complement control module/SCR domain  
  0.00000000000292   243-301   Complement control module/SCR domain  
  0.0000000000208   121-175   Complement control module/SCR domain  
FBpp0288795   4.73e-18   305-374   Complement control module/SCR domain  
  0.00000000000000306   1524-1585   Complement control module/SCR domain  
  0.00000000000167   1587-1644   Complement control module/SCR domain  
  0.0000000000153   240-302   Complement control module/SCR domain  
  0.0000000000306   178-254   Complement control module/SCR domain  
  0.0000000000306   1488-1539   Complement control module/SCR domain  
  0.0000000000389   357-421   Complement control module/SCR domain  
  0.000000000167   121-176   Complement control module/SCR domain  
  0.000000000445   1407-1472   Complement control module/SCR domain  
  0.0000000114   516-584   Complement control module/SCR domain  
  0.000000057   574-648   Complement control module/SCR domain  
  0.000025   933-982   Complement control module/SCR domain  
  0.0000514   468-517   Complement control module/SCR domain  
  0.000153   1010-1056   Complement control module/SCR domain  
  0.00278   1156-1220   Complement control module/SCR domain  
  0.00486   1246-1288   Complement control module/SCR domain  
FBpp0290182   0.000000000959   1118-1169   Complement control module/SCR domain  
FBpp0290183   0.00000000119   1118-1169   Complement control module/SCR domain  
FBpp0290439   0.000000000264   1109-1175   Complement control module/SCR domain  
  0.00000751   1181-1236   Complement control module/SCR domain  
  0.0000514   58-115   Complement control module/SCR domain  
FBpp0290440   0.000000000264   1109-1175   Complement control module/SCR domain  
  0.00000751   1181-1236   Complement control module/SCR domain  
  0.0000514   58-115   Complement control module/SCR domain  
FBpp0291317   4.72e-18   305-374   Complement control module/SCR domain  
  0.00000000000000306   1523-1584   Complement control module/SCR domain  
  0.00000000000167   1586-1643   Complement control module/SCR domain  
  0.0000000000153   240-302   Complement control module/SCR domain  
  0.0000000000306   178-254   Complement control module/SCR domain  
  0.0000000000306   1487-1538   Complement control module/SCR domain  
  0.0000000000389   357-421   Complement control module/SCR domain  
  0.000000000167   121-176   Complement control module/SCR domain  
  0.000000000445   1406-1471   Complement control module/SCR domain  
  0.0000000114   516-584   Complement control module/SCR domain  
  0.000000057   574-648   Complement control module/SCR domain  
  0.000025   934-983   Complement control module/SCR domain  
  0.0000514   468-517   Complement control module/SCR domain  
  0.000153   1011-1057   Complement control module/SCR domain  
  0.00278   1157-1221   Complement control module/SCR domain  
  0.00486   1247-1289   Complement control module/SCR domain  
FBpp0291318   4.72e-18   305-374   Complement control module/SCR domain  
  0.00000000000000306   1523-1584   Complement control module/SCR domain  
  0.00000000000167   1586-1643   Complement control module/SCR domain  
  0.0000000000153   240-302   Complement control module/SCR domain  
  0.0000000000306   178-254   Complement control module/SCR domain  
  0.0000000000306   1487-1538   Complement control module/SCR domain  
  0.0000000000389   357-421   Complement control module/SCR domain  
  0.000000000167   121-176   Complement control module/SCR domain  
  0.000000000445   1406-1471   Complement control module/SCR domain  
  0.0000000114   516-584   Complement control module/SCR domain  
  0.000000057   574-648   Complement control module/SCR domain  
  0.000025   934-983   Complement control module/SCR domain  
  0.0000514   468-517   Complement control module/SCR domain  
  0.000153   1011-1057   Complement control module/SCR domain  
  0.00278   1157-1221   Complement control module/SCR domain  
  0.00486   1247-1289   Complement control module/SCR domain  
FBpp0291372   5.42e-16   674-745   Complement control module/SCR domain  
  0.00000000000000736   1050-1114   Complement control module/SCR domain  
  0.00000000167   612-675   Complement control module/SCR domain  
  0.00000000222   728-792   Complement control module/SCR domain  
  0.00000278   551-623   Complement control module/SCR domain  
  0.000025   1186-1254   Complement control module/SCR domain  
  0.000681   1250-1296   Complement control module/SCR domain  
  0.075   2883-2938   Complement control module/SCR domain  
FBpp0292156   0.00000000959   22-86   Complement control module/SCR domain  
  0.000000032   70-126   Complement control module/SCR domain  
 
Weak hits:
FBpp0081059   0.000382   143-176   Complement control module/SCR domain  
FBpp0291689   0.0916   41-87   Complement control module/SCR domain  

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Select to display   Genome       Domains   Proteins
No Yes ALL   312829 312829
No Yes Homo sapiens 76_38 Human 1435 333
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 325 57
No Yes Gorilla gorilla 76_3.1 Western gorilla 448 88
No Yes Pongo abelii 76_2 Sumatran orangutan 317 56
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 308 50
No Yes Papio anubis 76 Olive baboon 302 59
No Yes Macaca mulatta 76_1 Rhesus monkey 637 126
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 608 130
No Yes Otolemur garnettii 76_3 Small-eared galago 278 49
No Yes Microcebus murinus 76_1 Gray mouse lemur 206 43
No Yes Rattus norvegicus 76_5.0 Norway rat 345 72
No Yes Mus musculus 76_38 House mouse 583 113
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 212 40
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 244 48
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 276 49
No Yes Cavia porcellus 76_3 Domestic guinea pig 316 64
No Yes Oryctolagus cuniculus 76_2 Rabbit 296 54
No Yes Ochotona princeps 76 American pika 235 42
No Yes Tupaia belangeri 76 Northern tree shrew 223 41
No Yes Sus scrofa 76_10.2 Pig 330 84
No Yes Bos taurus 76_3.1 Cattle 367 70
No Yes Ovis aries 76_3.1 Sheep 384 65
No Yes Vicugna pacos 76_1 Alpaca 237 37
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 248 48
No Yes Mustela putorius furo 76_1.0 Domestic ferret 338 59
No Yes Ailuropoda melanoleuca 76_1 Giant panda 376 68
No Yes Canis familiaris 76_3.1 Dog 524 79
No Yes Felis catus 76_6.2 Domestic cat 293 60
No Yes Equus caballus 76_2 Horse 670 77
No Yes Myotis lucifugus 76_2.0 Little brown bat 436 79
No Yes Pteropus vampyrus 76_1 Large flying fox 266 48
No Yes Sorex araneus 76_1 European shrew 180 32
No Yes Erinaceus europaeus 76 Western European hedgehog 185 40
No Yes Procavia capensis 76_1 Cape rock hyrax 200 44
No Yes Loxodonta africana 76_3 African savanna elephant 368 73
No Yes Echinops telfairi 76 Small Madagascar hedgehog 224 40
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 398 71
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 188 30
No Yes Macropus eugenii 76_1.0 Tammar wallaby 189 42
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 281 61
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 292 53
No Yes Ornithorhynchus anatinus 76_5 Platypus 317 73
No Yes Saccoglossus kowalevskii v3.0   436 89
No Yes Petromyzon marinus 76_7.0 Sea lamprey 116 22
No Yes Meleagris gallopavo 76_2 Turkey 235 53
No Yes Gallus gallus 76_4 Chicken 257 40
No Yes Anas platyrhynchos 76_1.0 Mallard 260 45
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 255 50
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 243 46
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 320 56
No Yes Anolis carolinensis 76_2.0 Green anole 288 48
No Yes Xenopus laevis African clawed frog 169 68
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 282 60
No Yes Latimeria chalumnae 76_1 Coelacanth 210 59
No Yes Lepisosteus oculatus 76 Spotted gar 357 61
No Yes Gadus morhua 76_1 Atlantic cod 209 51
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 385 69
No Yes Takifugu rubripes 76_4 Torafugu 1131 209
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 343 72
No Yes Oryzias latipes 76_1 Japanese medaka 280 61
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 267 52
No Yes Poecilia formosa 76 Amazon molly 273 52
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 372 77
No Yes Astyanax mexicanus 76 Mexican tetra 274 73
No Yes Danio rerio 76_9 Zebrafish 514 124
No Yes Oikopleura dioica   95 41
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 702 114
No Yes Ciona intestinalis 76 Vase tunicate 377 94
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 760 248
No Yes Adineta vaga   31 10
No Yes Octopus bimaculoides 280   214 50
No Yes Crassostrea gigas 22 Pacific oyster 252 106
No Yes Lottia gigantea Owl limpet 351 126
No Yes Helobdella robusta   57 11
No Yes Capitella sp. I   352 80
No Yes Danaus plexippus OGS1.0 Monarch butterfly 39 12
No Yes Heliconius melpomene Postman butterfly 40 12
No Yes Bombyx mori Domestic silkworm 35 11
No Yes Nasonia vitripennis Jewel wasp 42 10
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 69 16
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 60 19
No Yes Linepithema humile v1.1 Argentine ant 60 15
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 51 14
No Yes Solenopsis invicta v.2.2.3 Red fire ant 37 12
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 54 13
No Yes Atta cephalotes v1.1   55 15
No Yes Camponotus floridanus v3.3 Florida carpenter ant 53 13
No Yes Lucilia cuprina Australian sheep blowfly 44 9
No Yes Drosophila grimshawi 1.3   55 14
No Yes Drosophila willistoni 1.3   49 12
No Yes Drosophila pseudoobscura 2.13   53 15
No Yes Drosophila persimilis 1.3   46 13
No Yes Drosophila suzukii   53 14
No Yes Drosophila yakuba 1.3   56 17
No Yes Drosophila simulans 1.3   45 15
No Yes Drosophila sechellia 1.3   51 16
No Yes Drosophila melanogaster 76_5 Fruit fly 185 41
No Yes Drosophila erecta 1.3   56 17
No Yes Drosophila ananassae 1.3   48 11
No Yes Drosophila virilis 1.2   50 11
No Yes Drosophila mojavensis 1.3   47 11
No Yes Megaselia scalaris 22   19 9
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 56 18
No Yes Culex pipiens quinquefasciatus Southern house mosquito 49 16
No Yes Anopheles darlingi 22 American malaria mosquito 28 5
No Yes Anopheles gambiae 49_3j African malaria mosquito 51 14
No Yes Tribolium castaneum 3.0 Red flour beetle 75 17
No Yes Pediculus humanus corporis (Early assembly) Human body louse 54 11
No Yes Acyrthosiphon pisum Pea aphid 45 10
No Yes Rhodnius prolixus 22   40 11
No Yes Daphnia pulex Common water flea 108 24
No Yes Strigamia maritima 22   123 38
No Yes Sarcoptes scabiei   48 13
No Yes Tetranychus urticae Two-spotted spider mite 87 25
No Yes Ixodes scapularis (Preliminary) Black-legged tick 90 40
No Yes Pristionchus pacificus   14 6
No Yes Meloidogyne incognita Southern root-knot nematode 73 27
No Yes Meloidogyne hapla   11 5
No Yes Onchocerca volvulus 22   50 14
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 42 18
No Yes Caenorhabditis japonica   45 13
No Yes Caenorhabditis brenneri   69 10
No Yes Caenorhabditis remanei   49 12
No Yes Caenorhabditis elegans 76_235 Roundworm 126 19
No Yes Caenorhabditis briggsae 2   45 8
No Yes Trichinella spiralis 22   28 10
No Yes Hymenolepis microstoma   11 5
No Yes Echinococcus multilocularis   8 2
No Yes Echinococcus granulosus   9 2
No Yes Taenia solium Pork tapeworm 9 3
No Yes Schistosoma mansoni   6 3
No Yes Mnemiopsis leidyi Sea walnut 262 110
No Yes Acropora digitifera v1.0   343 78
No Yes Nematostella vectensis 1.0 Starlet sea anemone 120 33
No Yes Hydra vulgaris   48 17
No Yes Amphimedon queenslandica   273 48
No Yes Trichoplax adhaerens   7 2
No Yes Proterospongia sp. ATCC 50818   102 32
No Yes Monosiga brevicollis   30 12
No Yes Sphaeroforma arctica JP610   1 1
No Yes Capsaspora owczarzaki ATCC 30864   128 20
No Yes Micromonas pusilla CCMP1545 v3.0   1 1
No Yes Thecamonas trahens ATCC 50062   227 38
No Yes Pythium iwayamai DAOM BR242034 22   1 1
No Yes Pythium arrhenomanes ATCC 12531 22   1 1
No Yes Pythium ultimum v1.7-2   1 1
No Yes Pythium aphanidermatum DAOM BR444 22   1 1
No Yes Pythium irregulare DAOM BR486 22   1 1
No Yes Pythium vexans DAOM BR484 22   1 1
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 1 1
No Yes Phytophthora infestans T30-4   1 1
No Yes Perkinsus marinus ATCC 50983   2 1
No Yes Cryptosporidium hominis   2 2
No Yes Cryptosporidium muris   2 2
No Yes Cryptosporidium parvum Iowa II   2 2
No Yes Neospora caninum   2 2
No Yes Toxoplasma gondii VEG   1 1
No Yes Toxoplasma gondii ME49   2 2
No Yes Plasmodium falciparum 3D7   1 1
No Yes Plasmodium vivax SaI-1 7.0   1 1
No Yes Plasmodium knowlesi strain H   1 1
No Yes Plasmodium yoelii ssp. yoelii 1   2 2
No Yes Plasmodium chabaudi   1 1
No Yes Plasmodium berghei ANKA   1 1
No Yes Symbiodinium minutum clade B1 v1.2   29 17
No Yes Guillardia theta CCMP2712 v1.0   32 13
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 359 80
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 155 34
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 60 15
No Yes Ascaris suum Victoria/Ghent Pig roundworm 43 11
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 53 14
No Yes Neospora caninum Nc-Liverpool 6.2   2 2
No Yes Plasmodium falciparum HB3   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 1543 346
No Yes Homo sapiens (NCBI version) Human 592 109
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 294 55
No Yes Heliconius numata (Incomplete)   2 2
No Yes Loa loa v3.3 (Request) Eye worm 46 12
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 38 17
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 31 11
No Yes Homo sapiens 69_37 Human 414 76
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 322 54
No Yes Gorilla gorilla 69_3.1 Western gorilla 314 51
No Yes Pongo abelii 69_2 Sumatran orangutan 311 54
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 265 46
No Yes Macaca mulatta 69_1 Rhesus monkey 285 54
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 307 53
No Yes Otolemur garnettii 69_3 Small-eared galago 275 47
No Yes Microcebus murinus 69_1 Gray mouse lemur 206 43
No Yes Rattus norvegicus 69_3.4 Norway rat 299 55
No Yes Mus musculus 69_38 House mouse 291 58
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 212 40
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 236 47
No Yes Cavia porcellus 69_3 Domestic guinea pig 260 47
No Yes Oryctolagus cuniculus 69_2 Rabbit 290 51
No Yes Ochotona princeps 69 American pika 235 42
No Yes Tupaia belangeri 69 Northern tree shrew 223 41
No Yes Sus scrofa 69_10.2 Pig 266 54
No Yes Bos taurus 69_3.1 Cattle 301 54
No Yes Vicugna pacos 69_1 Alpaca 237 37
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 248 48
No Yes Mustela putorius furo 69_1.0 Domestic ferret 311 58
No Yes Ailuropoda melanoleuca 69_1 Giant panda 286 57
No Yes Canis familiaris 69_3.1 Dog 292 48
No Yes Felis catus 69 Domestic cat 175 42
No Yes Equus caballus 69_2 Horse 323 55
No Yes Myotis lucifugus 69_2.0 Little brown bat 396 71
No Yes Pteropus vampyrus 69_1 Large flying fox 266 48
No Yes Sorex araneus 69_1 European shrew 180 32
No Yes Erinaceus europaeus 69 Western European hedgehog 185 40
No Yes Procavia capensis 69_1 Cape rock hyrax 200 44
No Yes Loxodonta africana 69_3 African savanna elephant 293 55
No Yes Echinops telfairi 69 Small Madagascar hedgehog 224 40
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 204 43
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 188 30
No Yes Macropus eugenii 69_1.0 Tammar wallaby 189 42
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 212 45
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 279 52
No Yes Ornithorhynchus anatinus 69_5 Platypus 277 64
No Yes Petromyzon marinus 69_7.0 Sea lamprey 113 21
No Yes Meleagris gallopavo 69_2 Turkey 205 43
No Yes Gallus gallus 69_2 Chicken 252 42
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 250 47
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 269 48
No Yes Anolis carolinensis 69_2.0 Green anole 258 43
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 243 49
No Yes Latimeria chalumnae 69_1 Coelacanth 174 47
No Yes Gadus morhua 69_1 Atlantic cod 193 47
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 248 53
No Yes Takifugu rubripes 69_4 Torafugu 249 49
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 270 53
No Yes Oryzias latipes 69_1 Japanese medaka 257 51
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 267 52
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 312 58
No Yes Danio rerio 69_9 Zebrafish 338 71
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 360 70
No Yes Ciona intestinalis 69 Vase tunicate 368 92
No Yes Drosophila melanogaster 69_5 Fruit fly 55 15
No Yes Caenorhabditis elegans 69_215 Roundworm 49 10
No Yes Endophytic microbiome from Rice (meta-genome)   1 1
No Yes NCBI 2017_08 genome   135945 27302
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   2 1
No Yes Protozoadb 2010_08 (Protozoadb)   24 24
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   10951 2334
No Yes Termite Protist Endosymbiont Community (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   84109 19171
No Yes Global Ocean Sampling Expedition (GOS)   50 31
No Yes NCBI viral sequences (Viral)   117 36
No Yes PDB chains (SCOP 1.75) (PDB)   82 40
No Yes Protein Data Bank (all PDB sequenc)   684 262
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   1247 1247
No Yes TargetDB (Targets)   314 85
No Yes UniProt viral sequences (Viral)   446 138

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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