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  Home > Genomes > Pan troglodytes 76_2.1.4 > Spectrin repeat domains


Spectrin repeat superfamily domain assignments
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Pan troglodytes 76_2.1.4

Assignment details

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Pan troglodytes 76_2.1.4 has 260 significant domains in 32 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSPTRP00000001959   0.000036   103-195   Spectrin repeat  
ENSPTRP00000002543   4.08e-33   424-579   Spectrin repeat  
  3.4e-32   318-469   Spectrin repeat  
  4.73e-32   637-789   Spectrin repeat  
  2.88e-29   217-358   Spectrin repeat  
  1.07e-28   756-896   Spectrin repeat  
  1.83e-27   1343-1489   Spectrin repeat  
  1.83e-27   1662-1781   Spectrin repeat  
  2.36e-27   110-261   Spectrin repeat  
  2.95e-27   1237-1380   Spectrin repeat  
  1.07e-25   1767-1926   Spectrin repeat  
  6.99e-25   19-154   Spectrin repeat  
  5.89e-24   2038-2150   Spectrin repeat  
  1.06e-23   1449-1572   Spectrin repeat  
  3.27e-23   1575-1695   Spectrin repeat  
  1.27e-18   900-964,1042-1080   Spectrin repeat  
  2.62e-17   1895-2031   Spectrin repeat  
  8.38e-17   2157-2264   Spectrin repeat  
  0.000000000000576   1088-1182   Spectrin repeat  
ENSPTRP00000003621   2.09e-34   274-396   Spectrin repeat  
  5.63e-27   510-613   Spectrin repeat  
  7.2e-24   391-506   Spectrin repeat  
  0.0000000000000592   622-701   Spectrin repeat  
ENSPTRP00000010600   0.000000000017   768-879   Spectrin repeat  
  0.00000106   1080-1189   Spectrin repeat  
  0.00000273   961-1056   Spectrin repeat  
ENSPTRP00000010899   8.24e-18   6192-6347   Spectrin repeat  
  1.87e-17   5972-6098   Spectrin repeat  
  0.00000000000000101   5885-6017   Spectrin repeat  
  0.000000000000012   4896-5052   Spectrin repeat  
  0.000000000000013   6101-6210   Spectrin repeat  
  0.0000000000000576   6616-6762   Spectrin repeat  
  0.00000000000518   5064-5168   Spectrin repeat  
  0.0000000000985   5761-5914   Spectrin repeat  
  0.000000000654   5245-5378   Spectrin repeat  
  0.00000000216   5134-5237   Spectrin repeat  
  0.0000000027   6521-6643   Spectrin repeat  
  0.0000000157   5596-5705   Spectrin repeat  
  0.000000068   3733-3880   Spectrin repeat  
  0.0000000749   2697-2830   Spectrin repeat  
  0.00000018   2099-2216   Spectrin repeat  
  0.00000196   1891-2032   Spectrin repeat  
  0.0000059   2225-2352   Spectrin repeat  
  0.000016   3212-3317   Spectrin repeat  
  0.000128   2799-2937   Spectrin repeat  
  0.000181   1487-1602   Spectrin repeat  
  0.000374   4588-4726   Spectrin repeat  
  0.00167   339-430,616-666   Spectrin repeat  
  0.0252   3323-3465   Spectrin repeat  
  0.0424   1781-1897   Spectrin repeat  
  0.0612   2522-2618   Spectrin repeat  
ENSPTRP00000010981   2.09e-34   274-396   Spectrin repeat  
  5.63e-27   510-613   Spectrin repeat  
  7.2e-24   391-506   Spectrin repeat  
  0.0000000000000592   622-701   Spectrin repeat  
ENSPTRP00000011407   0.000000000681   7-101   Spectrin repeat  
  0.00000000071   576-718   Spectrin repeat  
  0.00000000122   189-303   Spectrin repeat  
  0.0000255   416-528   Spectrin repeat  
ENSPTRP00000013205   1.67e-16   268-392   Spectrin repeat  
  0.00000000848   608-721,751-778   Spectrin repeat  
  0.000000471   93-212   Spectrin repeat  
  0.000475   485-620   Spectrin repeat  
ENSPTRP00000016430   0.0000000000398   188-330   Spectrin repeat  
  0.0147   584-697   Spectrin repeat  
  0.0623   710-823,851-878   Spectrin repeat  
ENSPTRP00000018635   0.0000763   109-201   Spectrin repeat  
ENSPTRP00000018747   4.32e-35   286-408   Spectrin repeat  
  1.44e-29   522-640   Spectrin repeat  
  4.45e-25   409-517   Spectrin repeat  
  1.87e-23   646-758   Spectrin repeat  
ENSPTRP00000020587   0.00000000202   620-720   Spectrin repeat  
ENSPTRP00000021704   0.0000000806   47-127   Spectrin repeat  
  0.000000144   209-352   Spectrin repeat  
  0.000125   958-1102   Spectrin repeat  
  0.000446   132-235   Spectrin repeat  
  0.0187   846-992   Spectrin repeat  
  0.0427   407-531   Spectrin repeat  
  0.0576   682-750   Spectrin repeat  
ENSPTRP00000021708   0.0000000000107   463-602   Spectrin repeat  
  0.000302   244-372   Spectrin repeat  
  0.00208   376-499   Spectrin repeat  
ENSPTRP00000026397   9.03e-19   193-329   Spectrin repeat  
  4.06e-18   1013-1150   Spectrin repeat  
  1.03e-17   415-556   Spectrin repeat  
  0.0000000000000168   757-916   Spectrin repeat  
  0.00000000877   106-224   Spectrin repeat  
  0.00000406   561-681   Spectrin repeat  
ENSPTRP00000026951   0.00000000000000888   318-423   Spectrin repeat  
ENSPTRP00000028715   6.36e-21   256-392   Spectrin repeat  
  1.57e-20   1053-1190   Spectrin repeat  
  1.17e-19   803-956   Spectrin repeat  
  2.44e-18   477-618   Spectrin repeat  
  0.0000000103   623-730   Spectrin repeat  
  0.0000000484   170-286   Spectrin repeat  
  0.0719   397-509   Spectrin repeat  
ENSPTRP00000030221   0.00000000000000162   836-964,991-1018   Spectrin repeat  
  0.00000000000101   326-455   Spectrin repeat  
  0.0000072   189-272   Spectrin repeat  
ENSPTRP00000031272   4.45e-29   2687-2846   Spectrin repeat  
  1.65e-28   2907-3063   Spectrin repeat  
  4.44e-28   2517-2630   Spectrin repeat  
  8.38e-25   2028-2187   Spectrin repeat  
  1.77e-24   1485-1642   Spectrin repeat  
  1.96e-24   2269-2409   Spectrin repeat  
  3.53e-23   2359-2509   Spectrin repeat  
  5.46e-22   716-865   Spectrin repeat  
  2.28e-21   3059-3174   Spectrin repeat  
  5.04e-21   1048-1203   Spectrin repeat  
  1.3e-20   248-406   Spectrin repeat  
  3.27e-17   1929-2068   Spectrin repeat  
  1.75e-16   1262-1422   Spectrin repeat  
  2.49e-16   1637-1754   Spectrin repeat  
  0.0000000000000216   937-1059   Spectrin repeat  
  0.000000000000605   2186-2298   Spectrin repeat  
  0.000000000000828   19-140   Spectrin repeat  
  0.00000000000144   1821-1934   Spectrin repeat  
  0.00000000000576   3184-3256,3286-3315   Spectrin repeat  
  0.000000000705   849-950   Spectrin repeat  
  0.000000000884   465-585   Spectrin repeat  
  0.00000000158   624-733   Spectrin repeat  
  0.000259   157-260   Spectrin repeat  
ENSPTRP00000031878   1.01e-26   1923-2079   Spectrin repeat  
  4.71e-20   311-418   Spectrin repeat  
  2.52e-19   2505-2636   Spectrin repeat  
  7.2e-17   389-526   Spectrin repeat  
  0.00000000000000158   494-631   Spectrin repeat  
  0.00000000000000373   2281-2439   Spectrin repeat  
  0.0000000000000108   743-901   Spectrin repeat  
  0.0000000000000128   2682-2801   Spectrin repeat  
  0.000000000000013   963-1083   Spectrin repeat  
  0.0000000000000168   1181-1333   Spectrin repeat  
  0.000000000000278   1492-1647   Spectrin repeat  
  0.000000000000406   2055-2178   Spectrin repeat  
  0.0000000192   1620-1745   Spectrin repeat  
  0.0000000989   1083-1192   Spectrin repeat  
  0.0011   1305-1396   Spectrin repeat  
  0.00199   1414-1509   Spectrin repeat  
  0.018   690-759   Spectrin repeat  
  0.0432   2233-2298   Spectrin repeat  
ENSPTRP00000031935   2.64e-21   7002-7157   Spectrin repeat  
  2.88e-19   7381-7495   Spectrin repeat  
  9.6e-19   6782-6906   Spectrin repeat  
  1.44e-17   573-708   Spectrin repeat  
  1.92e-17   2067-2223   Spectrin repeat  
  3.67e-17   2283-2405   Spectrin repeat  
  7.06e-17   5921-6062   Spectrin repeat  
  7.58e-17   3457-3614   Spectrin repeat  
  1.8e-16   6374-6505   Spectrin repeat  
  0.00000000000000262   6035-6177   Spectrin repeat  
  0.00000000000000468   1409-1539   Spectrin repeat  
  0.0000000000000104   2711-2832   Spectrin repeat  
  0.0000000000000127   4000-4155   Spectrin repeat  
  0.0000000000000157   3239-3395   Spectrin repeat  
  0.0000000000000157   5710-5850   Spectrin repeat  
  0.0000000000000705   6911-7020   Spectrin repeat  
  0.000000000000144   355-489   Spectrin repeat  
  0.000000000000183   2839-2951   Spectrin repeat  
  0.000000000000317   2517-2649   Spectrin repeat  
  0.000000000000605   1627-1753   Spectrin repeat  
  0.00000000000103   6301-6408   Spectrin repeat  
  0.00000000000372   4879-5017   Spectrin repeat  
  0.00000000000644   6572-6722   Spectrin repeat  
  0.0000000000203   1781-1898   Spectrin repeat  
  0.0000000000306   7458-7604   Spectrin repeat  
  0.0000000000314   4681-4758,4869-4915   Spectrin repeat  
  0.0000000000369   1197-1352   Spectrin repeat  
  0.0000000000471   3908-4031   Spectrin repeat  
  0.00000000374   4124-4229   Spectrin repeat  
  0.00000000824   1000-1139   Spectrin repeat  
  0.0000000163   4423-4542   Spectrin repeat  
  0.000000017   873-1024   Spectrin repeat  
  0.0000000182   662-814   Spectrin repeat  
  0.0000000273   38-176   Spectrin repeat  
  0.0000000504   494-604   Spectrin repeat  
  0.0000000746   2432-2543   Spectrin repeat  
  0.00000017   4547-4638   Spectrin repeat  
  0.000000528   1982-2079   Spectrin repeat  
  0.000000686   5505-5588   Spectrin repeat  
  0.00000116   5027-5141   Spectrin repeat  
  0.00000144   3156-3284   Spectrin repeat  
  0.00000759   3586-3722   Spectrin repeat  
  0.00000839   2950-3083   Spectrin repeat  
  0.00000851   3826-3937   Spectrin repeat  
  0.0000113   5328-5433   Spectrin repeat  
  0.000763   5637-5747   Spectrin repeat  
  0.00458   3058-3158   Spectrin repeat  
ENSPTRP00000035356   5.76e-22   412-528   Spectrin repeat  
  1.08e-20   1289-1474   Spectrin repeat  
  6.84e-17   755-857   Spectrin repeat  
  0.000000000759   661-754   Spectrin repeat  
  0.000106   862-944   Spectrin repeat  
  0.000202   1179-1288   Spectrin repeat  
ENSPTRP00000038026   6.02e-16   220-341   Spectrin repeat  
  0.0000000000157   79-176   Spectrin repeat  
ENSPTRP00000041211   9.95e-34   297-419   Spectrin repeat  
  1.57e-29   907-1062   Spectrin repeat  
  8.52e-27   1014-1168   Spectrin repeat  
  3.47e-26   1851-2007   Spectrin repeat  
  1.44e-25   1226-1379   Spectrin repeat  
  4.46e-25   697-813   Spectrin repeat  
  6.84e-22   1559-1689   Spectrin repeat  
  1.1e-21   820-947   Spectrin repeat  
  1.18e-21   532-640   Spectrin repeat  
  1.32e-20   1692-1798   Spectrin repeat  
  2.88e-19   429-527   Spectrin repeat  
  2.16e-18   1381-1493   Spectrin repeat  
  0.00000000000048   1490-1585   Spectrin repeat  
  0.000000000475   2012-2072   Spectrin repeat  
ENSPTRP00000044450   5.57e-39   741-888   Spectrin repeat  
  5.57e-37   203-358   Spectrin repeat  
  4.26e-35   1824-1979   Spectrin repeat  
  8.77e-34   521-674   Spectrin repeat  
  1.24e-32   1287-1424   Spectrin repeat  
  4.05e-32   418-569   Spectrin repeat  
  9.72e-32   1396-1536   Spectrin repeat  
  1.66e-30   12-145   Spectrin repeat  
  2.49e-29   1632-1765   Spectrin repeat  
  9.29e-29   1929-2084   Spectrin repeat  
  4.45e-26   2091-2204   Spectrin repeat  
  1.31e-20   2206-2321   Spectrin repeat  
  1.44e-20   1553-1662   Spectrin repeat  
  3.28e-19   1057-1164   Spectrin repeat  
  3.45e-19   889-960   Spectrin repeat  
  0.0555   1208-1232   Spectrin repeat  
ENSPTRP00000046250   7.72e-36   295-416   Spectrin repeat  
  3.6e-29   1011-1165   Spectrin repeat  
  1.44e-28   603-729   Spectrin repeat  
  6.86e-28   1223-1376   Spectrin repeat  
  2.26e-27   1859-2013   Spectrin repeat  
  3.53e-26   812-951   Spectrin repeat  
  1.2e-24   1453-1590   Spectrin repeat  
  3.4e-24   694-814   Spectrin repeat  
  1.7e-23   425-528   Spectrin repeat  
  8.51e-23   1699-1804   Spectrin repeat  
  2.75e-22   1595-1696   Spectrin repeat  
  7.85e-22   529-637   Spectrin repeat  
  9.95e-18   1384-1482   Spectrin repeat  
  0.00000000000000995   1986-2079   Spectrin repeat  
  0.0122   1169-1242   Spectrin repeat  
ENSPTRP00000048712   1.19e-29   277-397   Spectrin repeat  
  2.13e-29   1374-1529   Spectrin repeat  
  7.2e-23   724-855   Spectrin repeat  
  3.14e-22   1695-1851   Spectrin repeat  
  2.26e-21   1587-1737   Spectrin repeat  
  1.14e-17   1111-1214   Spectrin repeat  
  8.23e-17   913-1068   Spectrin repeat  
  4.06e-16   617-712   Spectrin repeat  
  0.00000000000000576   406-515   Spectrin repeat  
  0.00000000000749   476-602   Spectrin repeat  
  0.0000000000158   1211-1324   Spectrin repeat  
ENSPTRP00000051593   4.84e-29   299-420   Spectrin repeat  
  3.14e-26   2452-2603   Spectrin repeat  
  2.68e-24   1923-2075   Spectrin repeat  
  2.49e-23   2133-2288   Spectrin repeat  
  2.95e-23   2346-2498   Spectrin repeat  
  7.2e-22   590-742   Spectrin repeat  
  7.55e-22   1263-1408   Spectrin repeat  
  1.12e-21   1414-1554   Spectrin repeat  
  1.26e-21   2559-2711   Spectrin repeat  
  3.96e-20   1740-1861   Spectrin repeat  
  2.13e-17   1051-1206   Spectrin repeat  
  1.21e-16   862-996   Spectrin repeat  
  3.4e-16   2661-2810   Spectrin repeat  
  0.00000000000000508   2971-3082   Spectrin repeat  
  0.0000000000000051   2769-2891   Spectrin repeat  
  0.000000000000036   1564-1668   Spectrin repeat  
  0.00000000000156   393-528   Spectrin repeat  
  0.0000000702   741-822,867-898   Spectrin repeat  
  0.000000158   1659-1742   Spectrin repeat  
ENSPTRP00000052603   6.54e-34   299-420   Spectrin repeat  
  1.13e-28   605-745   Spectrin repeat  
  3.01e-28   1338-1493   Spectrin repeat  
  3.02e-27   1657-1811   Spectrin repeat  
  1.44e-23   1035-1181   Spectrin repeat  
  2.22e-22   429-530   Spectrin repeat  
  2.28e-22   1496-1603   Spectrin repeat  
  1.05e-20   742-858   Spectrin repeat  
  1.7e-20   819-943   Spectrin repeat  
  9.76e-19   533-640   Spectrin repeat  
  2.62e-17   1781-1876   Spectrin repeat  
  0.0000000000000204   945-1044   Spectrin repeat  
  0.000000000236   1192-1288   Spectrin repeat  
ENSPTRP00000053323   8.77e-18   278-428   Spectrin repeat  
  0.0321   435-529   Spectrin repeat  
ENSPTRP00000055521   0.0000000023   190-285   Spectrin repeat  
ENSPTRP00000059441   8.35e-34   254-376   Spectrin repeat  
  5.89e-31   490-611   Spectrin repeat  
  5.89e-27   377-485   Spectrin repeat  
  3.74e-22   614-726   Spectrin repeat  
 
Weak hits:
ENSPTRP00000007166   0.0115   179-244   Spectrin repeat  
ENSPTRP00000007839   0.0671   166-235   Spectrin repeat  
ENSPTRP00000008165   0.0547   11-105   Spectrin repeat  
ENSPTRP00000009146   0.00935   56-166   Spectrin repeat  
ENSPTRP00000010055   0.0755   515-554   Spectrin repeat  
ENSPTRP00000015209   0.0173   30-107   Spectrin repeat  
ENSPTRP00000015289   0.027   497-539   Spectrin repeat  
ENSPTRP00000016736   0.0114   650-733   Spectrin repeat  
ENSPTRP00000018298   0.00647   223-321   Spectrin repeat  
ENSPTRP00000020204   0.0191   224-280   Spectrin repeat  
ENSPTRP00000021995   0.00144   1408-1510   Spectrin repeat  
ENSPTRP00000024725   0.0608   117-172   Spectrin repeat  
ENSPTRP00000036601   0.0269   25-70   Spectrin repeat  
ENSPTRP00000037586   0.00964   150-279   Spectrin repeat  
ENSPTRP00000040843   0.0115   179-244   Spectrin repeat  
ENSPTRP00000042581   0.0155   24-79   Spectrin repeat  
ENSPTRP00000046175   0.0899   328-446   Spectrin repeat  
ENSPTRP00000050937   0.0864   130-213   Spectrin repeat  
ENSPTRP00000051492   0.0619   49-125   Spectrin repeat  
ENSPTRP00000054547   0.00576   178-244   Spectrin repeat  
ENSPTRP00000059923   0.0115   179-244   Spectrin repeat  
ENSPTRP00000060016   0.00626   71-166   Spectrin repeat  
ENSPTRP00000061257   0.0647   111-184   Spectrin repeat  

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Select to display   Genome       Domains   Proteins
No Yes ALL   649625 649625
No Yes Homo sapiens 76_38 Human 1347 188
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 260 32
No Yes Gorilla gorilla 76_3.1 Western gorilla 483 54
No Yes Pongo abelii 76_2 Sumatran orangutan 310 36
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 266 33
No Yes Papio anubis 76 Olive baboon 276 35
No Yes Macaca mulatta 76_1 Rhesus monkey 743 89
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 834 100
No Yes Otolemur garnettii 76_3 Small-eared galago 324 37
No Yes Microcebus murinus 76_1 Gray mouse lemur 241 28
No Yes Rattus norvegicus 76_5.0 Norway rat 406 50
No Yes Mus musculus 76_38 House mouse 985 134
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 259 30
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 300 39
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 310 37
No Yes Cavia porcellus 76_3 Domestic guinea pig 324 38
No Yes Oryctolagus cuniculus 76_2 Rabbit 301 38
No Yes Ochotona princeps 76 American pika 249 27
No Yes Tupaia belangeri 76 Northern tree shrew 240 28
No Yes Sus scrofa 76_10.2 Pig 279 49
No Yes Bos taurus 76_3.1 Cattle 335 37
No Yes Ovis aries 76_3.1 Sheep 309 40
No Yes Vicugna pacos 76_1 Alpaca 190 20
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 294 32
No Yes Mustela putorius furo 76_1.0 Domestic ferret 323 34
No Yes Ailuropoda melanoleuca 76_1 Giant panda 448 46
No Yes Canis familiaris 76_3.1 Dog 503 57
No Yes Felis catus 76_6.2 Domestic cat 320 52
No Yes Equus caballus 76_2 Horse 738 71
No Yes Myotis lucifugus 76_2.0 Little brown bat 255 38
No Yes Pteropus vampyrus 76_1 Large flying fox 289 32
No Yes Sorex araneus 76_1 European shrew 190 23
No Yes Erinaceus europaeus 76 Western European hedgehog 184 20
No Yes Procavia capensis 76_1 Cape rock hyrax 258 31
No Yes Loxodonta africana 76_3 African savanna elephant 421 53
No Yes Echinops telfairi 76 Small Madagascar hedgehog 228 29
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 391 58
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 165 18
No Yes Macropus eugenii 76_1.0 Tammar wallaby 248 27
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 355 47
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 360 39
No Yes Ornithorhynchus anatinus 76_5 Platypus 341 71
No Yes Saccoglossus kowalevskii v3.0   2079 67
No Yes Petromyzon marinus 76_7.0 Sea lamprey 172 32
No Yes Meleagris gallopavo 76_2 Turkey 299 37
No Yes Gallus gallus 76_4 Chicken 332 35
No Yes Anas platyrhynchos 76_1.0 Mallard 292 36
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 264 34
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 291 32
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 266 39
No Yes Anolis carolinensis 76_2.0 Green anole 299 35
No Yes Xenopus laevis African clawed frog 101 33
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 313 41
No Yes Latimeria chalumnae 76_1 Coelacanth 352 47
No Yes Lepisosteus oculatus 76 Spotted gar 489 49
No Yes Gadus morhua 76_1 Atlantic cod 308 39
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 397 56
No Yes Takifugu rubripes 76_4 Torafugu 1586 184
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 453 55
No Yes Oryzias latipes 76_1 Japanese medaka 351 49
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 349 45
No Yes Poecilia formosa 76 Amazon molly 366 42
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 456 53
No Yes Astyanax mexicanus 76 Mexican tetra 398 58
No Yes Danio rerio 76_9 Zebrafish 590 93
No Yes Oikopleura dioica   51 13
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 180 28
No Yes Ciona intestinalis 76 Vase tunicate 69 11
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 287 42
No Yes Adineta vaga   157 43
No Yes Octopus bimaculoides 280   368 41
No Yes Crassostrea gigas 22 Pacific oyster 185 21
No Yes Lottia gigantea Owl limpet 185 16
No Yes Helobdella robusta   96 16
No Yes Capitella sp. I   182 19
No Yes Danaus plexippus OGS1.0 Monarch butterfly 151 21
No Yes Heliconius melpomene Postman butterfly 125 15
No Yes Bombyx mori Domestic silkworm 132 44
No Yes Nasonia vitripennis Jewel wasp 131 8
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 389 45
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 159 18
No Yes Linepithema humile v1.1 Argentine ant 150 23
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 157 24
No Yes Solenopsis invicta v.2.2.3 Red fire ant 131 22
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 153 13
No Yes Atta cephalotes v1.1   153 20
No Yes Camponotus floridanus v3.3 Florida carpenter ant 172 16
No Yes Lucilia cuprina Australian sheep blowfly 149 15
No Yes Drosophila grimshawi 1.3   161 14
No Yes Drosophila willistoni 1.3   160 13
No Yes Drosophila pseudoobscura 2.13   152 13
No Yes Drosophila persimilis 1.3   114 19
No Yes Drosophila suzukii   150 12
No Yes Drosophila yakuba 1.3   160 12
No Yes Drosophila simulans 1.3   80 16
No Yes Drosophila sechellia 1.3   140 14
No Yes Drosophila melanogaster 76_5 Fruit fly 1379 76
No Yes Drosophila erecta 1.3   158 12
No Yes Drosophila ananassae 1.3   157 11
No Yes Drosophila virilis 1.2   125 14
No Yes Drosophila mojavensis 1.3   158 15
No Yes Megaselia scalaris 22   92 14
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 129 13
No Yes Culex pipiens quinquefasciatus Southern house mosquito 120 18
No Yes Anopheles darlingi 22 American malaria mosquito 91 11
No Yes Anopheles gambiae 49_3j African malaria mosquito 140 11
No Yes Tribolium castaneum 3.0 Red flour beetle 158 12
No Yes Pediculus humanus corporis (Early assembly) Human body louse 163 16
No Yes Acyrthosiphon pisum Pea aphid 147 16
No Yes Rhodnius prolixus 22   130 18
No Yes Daphnia pulex Common water flea 197 26
No Yes Strigamia maritima 22   161 13
No Yes Sarcoptes scabiei   112 9
No Yes Tetranychus urticae Two-spotted spider mite 91 23
No Yes Ixodes scapularis (Preliminary) Black-legged tick 56 11
No Yes Pristionchus pacificus   91 24
No Yes Meloidogyne incognita Southern root-knot nematode 48 12
No Yes Meloidogyne hapla   33 8
No Yes Onchocerca volvulus 22   100 14
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 149 17
No Yes Caenorhabditis japonica   107 12
No Yes Caenorhabditis brenneri   135 19
No Yes Caenorhabditis remanei   99 19
No Yes Caenorhabditis elegans 76_235 Roundworm 328 33
No Yes Caenorhabditis briggsae 2   91 11
No Yes Trichinella spiralis 22   102 13
No Yes Hymenolepis microstoma   93 13
No Yes Echinococcus multilocularis   94 14
No Yes Echinococcus granulosus   98 12
No Yes Taenia solium Pork tapeworm 84 16
No Yes Schistosoma mansoni   105 22
No Yes Mnemiopsis leidyi Sea walnut 61 15
No Yes Thelohanellus kitauei   3 1
No Yes Acropora digitifera v1.0   185 47
No Yes Nematostella vectensis 1.0 Starlet sea anemone 134 26
No Yes Hydra vulgaris   81 17
No Yes Amphimedon queenslandica   94 17
No Yes Trichoplax adhaerens   135 14
No Yes Proterospongia sp. ATCC 50818   79 12
No Yes Monosiga brevicollis   52 9
No Yes Sphaeroforma arctica JP610   4 1
No Yes Capsaspora owczarzaki ATCC 30864   20 3
No Yes Conidiobolus coronatus NRRL28638 v1.0   3 2
No Yes Mortierella verticillata NRRL 6337   2 1
No Yes Phycomyces blakesleeanus   2 1
No Yes Rhizopus oryzae RA 99-880   6 4
No Yes Mucor circinelloides   4 2
No Yes Rhizomucor miehei CAU432   8 5
No Yes Sporisorium reilianum 22   2 1
No Yes Ustilago maydis   2 1
No Yes Cronartium quercuum f. sp. fusiforme G11 v1.0   2 1
No Yes Puccinia graminis f. sp. tritici CRL 75-36-700-3   1 1
No Yes Melampsora laricis-populina   2 1
No Yes Rhodotorula graminis WP1 v1.0   1 1
No Yes Sporobolomyces roseus IAM 13481   1 1
No Yes Microbotryum violaceum 22   1 1
No Yes Wallemia sebi v1.0   1 1
No Yes Sphaerobolus stellatus v1.0   4 3
No Yes Piloderma croceum F 1598 v1.0   3 2
No Yes Serpula lacrymans var. lacrymans S7.9   2 1
No Yes Coniophora puteana   2 1
No Yes Hydnomerulius pinastri v2.0   2 1
No Yes Paxillus rubicundulus Ve08.2h10 v1.0   2 1
No Yes Pisolithus microcarpus 441 v1.0   2 1
No Yes Pisolithus tinctorius Marx 270 v1.0   2 1
No Yes Scleroderma citrinum Foug A v1.0   3 2
No Yes Coprinopsis cinerea okayama7 130 v3   2 1
No Yes Pleurotus ostreatus Oyster mushroom 2 1
No Yes Amanita thiersii Skay4041 v1.0   2 1
No Yes Amanita muscaria Koide v1.0 Fly agaric 2 1
No Yes Galerina marginata v1.0   2 1
No Yes Hebeloma cylindrosporum h7 v2.0   2 1
No Yes Laccaria bicolor S238N-H82   2 1
No Yes Agaricus bisporus var. bisporus   3 2
No Yes Schizophyllum commune   2 1
No Yes Stereum hirsutum FP-91666 SS1 v1.0   2 1
No Yes Heterobasidion annosum   2 1
No Yes Gloeophyllum trabeumv1.0   2 1
No Yes Punctularia strigosozonata v1.0   2 1
No Yes Sebacina vermifera MAFF 305830 v1.0   2 1
No Yes Fomitiporia mediterranea v1.0   2 1
No Yes Tulasnella calospora AL13/4D v1.0   4 3
No Yes Postia placenta   3 2
No Yes Wolfiporia cocos MD-104 SS10 v1.0   2 1
No Yes Fomitopsis pinicolav1.0   2 1
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   2 1
No Yes Phanerochaete chrysosporium RP-78 2.1   2 1
No Yes Dichomitus squalens   2 1
No Yes Trametes versicolor v1.0   2 1
No Yes Tremella mesenterica Witches' butter 1 1
No Yes Daldinia eschscholzii EC12 v1.0   2 1
No Yes Apiospora montagnei NRRL 25634 v1.0   2 1
No Yes Magnaporthe poae ATCC 64411 22   2 1
No Yes Magnaporthe grisea 70-15   3 2
No Yes Podospora anserina   2 1
No Yes Sporotrichum thermophile ATCC 42464   3 2
No Yes Thielavia terrestris NRRL 8126   2 1
No Yes Chaetomium globosum CBS 148.51   2 1
No Yes Neurospora tetrasperma   2 1
No Yes Neurospora discreta FGSC 8579   2 1
No Yes Neurospora crassa OR74A   2 1
No Yes Cryphonectria parasitica Chestnut blight fungus 2 1
No Yes Verticillium albo-atrum VaMs.102   2 1
No Yes Verticillium dahliae VdLs.17   2 1
No Yes Acremonium alcalophilumv 1.0   2 1
No Yes Glomerella graminicola 22   2 1
No Yes Fusarium graminearum   3 2
No Yes Nectria haematococca mpVI   2 1
No Yes Fusarium oxysporum f. sp. lycopersici 4286   3 2
No Yes Fusarium verticillioides 7600   1 1
No Yes Trichoderma asperellum CBS 433.97 v1.0   2 1
No Yes Trichoderma atroviride   2 1
No Yes Trichoderma citrinoviride v1.0   2 1
No Yes Trichoderma reesei 1.2   3 2
No Yes Trichoderma virens Gv29-8   2 1
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   2 1
No Yes Trichoderma harzianum CBS 226.95 v1.0   2 1
No Yes Amorphotheca resinae v1.0 Creosote fungus 2 1
No Yes Botrytis cinerea B05.10   3 2
No Yes Sclerotinia sclerotiorum   2 1
No Yes Blumeria graminis 22   1 1
No Yes Didymella exigua CBS 183.55 v1.0   2 1
No Yes Leptosphaeria maculans 22   2 1
No Yes Setosphaeria turcica v1.0   2 1
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   2 1
No Yes Cochliobolus victoriae FI3 v1.0   2 1
No Yes Cochliobolus carbonum 26-R-13 v1.0   2 1
No Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 3 2
No Yes Alternaria brassicicola   2 1
No Yes Cochliobolus lunatus m118 v2.0   2 1
No Yes Pyrenophora teres f. teres 22   2 1
No Yes Pyrenophora tritici-repentis   2 1
No Yes Stagonospora nodorum   2 1
No Yes Mycosphaerella graminicola IPO323   2 1
No Yes Zasmidium cellare ATCC 36951 v1.0   4 3
No Yes Dothistroma septosporum   3 2
No Yes Septoria musiva v1.0   2 1
No Yes Mycosphaerella fijiensis CIRAD86   2 1
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   2 1
No Yes Paracoccidioides brasiliensis Pb18   2 1
No Yes Coccidioides posadasii RMSCC 3488   2 1
No Yes Coccidioides immitis RS   2 1
No Yes Ajellomyces dermatitidis SLH14081   2 1
No Yes Histoplasma capsulatum class NAmI strain WU24   2 1
No Yes Microsporum canis CBS 113480   2 1
No Yes Trichophyton equinum CBS 127.97   2 1
No Yes Trichophyton verrucosum HKI 0517   2 1
No Yes Arthroderma benhamiae CBS 112371   2 1
No Yes Trichophyton tonsurans CBS 112818   2 1
No Yes Trichophyton rubrum CBS 118892   2 1
No Yes Uncinocarpus reesii 1704   2 1
No Yes Aspergillus zonatus v1.0   2 1
No Yes Penicillium chrysogenum Wisconsin 54-1255   2 1
No Yes Penicillium chrysogenum v1.0   2 1
No Yes Aspergillus acidus v1.0   2 1
No Yes Aspergillus fumigatus Af293   2 1
No Yes Aspergillus brasiliensis v1.0   2 1
No Yes Aspergillus nidulans FGSC A4   2 1
No Yes Aspergillus sydowii v1.0   2 1
No Yes Aspergillus versicolor v1.0   2 1
No Yes Aspergillus glaucus   2 1
No Yes Aspergillus carbonarius ITEM 5010   2 1
No Yes Neosartorya fischeri NRRL 181   2 1
No Yes Aspergillus terreus NIH2624   2 1
No Yes Aspergillus tubingensis v1.0   2 1
No Yes Aspergillus wentii v1.0   2 1
No Yes Aspergillus oryzae RIB40   2 1
No Yes Aspergillus niger 22   2 1
No Yes Aspergillus niger ATCC 1015   2 1
No Yes Aspergillus flavus NRRL3357   2 1
No Yes Aspergillus clavatus NRRL 1   2 1
No Yes Penicillium marneffei ATCC 18224   2 1
No Yes Tuber melanosporum Mel28 22   2 1
No Yes Tuber melanosporum Vittad Perigord truffle 2 1
No Yes Hansenula polymorpha v2.0   1 1
No Yes Yarrowia lipolytica CLIB122   2 1
No Yes Schizosaccharomyces cryophilus OY26 22   1 1
No Yes Schizosaccharomyces octosporus yFS286   1 1
No Yes Schizosaccharomyces japonicus yFS275   1 1
No Yes Schizosaccharomyces pombe Fission yeast 2 2
No Yes Catenaria anguillulae PL171 v1.0   1 1
No Yes Allomyces macrogynus ATCC 38327   5 3
No Yes Spizellomyces punctatus DAOM BR117   2 1
No Yes Dictyostelium discoideum   4 1
No Yes Dictyostelium purpureum   4 1
No Yes Entamoeba dispar 1.2   3 3
No Yes Entamoeba invadens 1.2   1 1
No Yes Entamoeba histolytica 1   2 1
No Yes Capsella rubella v183   1 1
No Yes Phaseolus vulgaris v186 French bean 1 1
No Yes Solanum tuberosum Potato 1 1
No Yes Triticum aestivum 22 Bread wheat 1 1
No Yes Oryza meridionalis 22   1 1
No Yes Panicum virgatum v202 Switchgrass 2 2
No Yes Amborella trichopoda 22   1 1
No Yes Porphyridium purpureum 02_2012   1 1
No Yes Thecamonas trahens ATCC 50062   6 1
No Yes Bigelowiella natans CCMP2755 22   1 1
No Yes Trypanosoma vivax   1 1
No Yes Aureococcus anophagefferens   1 1
No Yes Albugo laibachii 22   1 1
No Yes Pythium iwayamai DAOM BR242034 22   1 1
No Yes Pythium arrhenomanes ATCC 12531 22   1 1
No Yes Pythium ultimum v1.7-2   1 1
No Yes Pythium aphanidermatum DAOM BR444 22   2 1
No Yes Pythium irregulare DAOM BR486 22   1 1
No Yes Pythium vexans DAOM BR484 22   2 1
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 1 1
No Yes Phytophthora sojae 1.1   1 1
No Yes Phytophthora infestans T30-4   1 1
No Yes Phytophthora capsici   1 1
No Yes Hyaloperonospora arabidopsidis 22   1 1
No Yes Perkinsus marinus ATCC 50983   1 1
No Yes Paramecium tetraurelia   1 1
No Yes Ichthyophthirius multifiliis strain G5   1 1
No Yes Naegleria gruberi   3 2
No Yes Trichomonas vaginalis   2 2
No Yes Guillardia theta CCMP2712 v1.0   1 1
No Yes Emiliania huxleyi CCMP1516   3 3
No Yes Synechococcus sp. PCC 7502   1 1
No Yes Halothece sp. PCC 7418   1 1
No Yes Saccharomonospora viridis DSM 43017   1 1
No Yes Herpetosiphon aurantiacus DSM 785   1 1
No Yes Chloroflexus aggregans DSM 9485   1 1
No Yes Truepera radiovictrix DSM 17093   1 1
No Yes Meiothermus ruber DSM 1279   1 1
No Yes Clostridium thermocellum ATCC 27405   1 1
No Yes Enterococcus faecalis 62   1 1
No Yes Pediococcus pentosaceus ATCC 25745   1 1
No Yes Bacillus sp. 1NLA3E   1 1
No Yes Bacillus anthracis str. A0248   1 1
No Yes Bacillus cellulosilyticus DSM 2522   2 2
No Yes Prosthecochloris aestuarii DSM 271   1 1
No Yes Niastella koreensis GR20-10   1 1
No Yes Thermosipho africanus TCF52B   1 1
No Yes Dictyoglomus turgidum DSM 6724   1 1
No Yes Burkholderia sp. CCGE1002   1 1
No Yes Burkholderia vietnamiensis G4   1 1
No Yes Acidiphilium multivorum AIU301   1 1
No Yes Acidiphilium cryptum JF-5   1 1
No Yes Beijerinckia indica subsp. indica ATCC 9039   1 1
No Yes Xanthomonas campestris pv. campestris str. B100   1 1
No Yes Thioalkalivibrio sulfidophilus HL-EbGr7   1 1
No Yes Shigella flexneri 5 str. 8401   1 1
No Yes Shigella dysenteriae Sd197   1 1
No Yes Fervidicoccus fontis Kam940   1 1
No Yes Thermofilum sp. 1910b   1 1
No Yes Halalkalicoccus jeotgali B3   2 2
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 285 54
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 914 52
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 193 16
No Yes Ascaris suum Victoria/Ghent Pig roundworm 98 11
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 240 26
No Yes Cryptococcus neoformans var. grubii H99   1 1
No Yes Cryptococcus neoformans B-3501A   1 1
No Yes Cryptococcus neoformans JEC21   1 1
No Yes Paracoccidioides brasiliensis Pb01   1 1
No Yes Paracoccidioides brasiliensis Pb03   2 1
No Yes Coccidioides posadasii str. Silveira   2 1
No Yes Coccidioides immitis RMSCC 3703   2 1
No Yes Coccidioides immitis RMSCC 2394   2 1
No Yes Coccidioides immitis H538.4   1 1
No Yes Ajellomyces dermatitidis ER-3   2 1
No Yes Histoplasma capsulatum H143   2 1
No Yes Histoplasma capsulatum H88   2 1
No Yes Histoplasma capsulatum G186AR   2 1
No Yes Aspergillus fumigatus A1163   2 1
No Yes Saccharomyces cerevisiae FostersO   1 1
No Yes Saccharomyces cerevisiae AWRI796   1 1
No Yes Schizosaccharomyces pombe 972h-   2 2
No Yes Batrachochytrium dendrobatidis JEL423   2 1
No Yes Batrachochytrium dendrobatidis JAM81   2 1
No Yes Thermus thermophilus HB8   1 1
No Yes Clostridium thermocellum DSM 1313   1 1
No Yes Coprococcus catus GD/7   1 1
No Yes Enterococcus faecalis D32   1 1
No Yes Bacillus thuringiensis serovar konkukian str. 97-27   1 1
No Yes Bacillus cereus biovar anthracis str. CI   1 1
No Yes Bacillus cereus AH820   1 1
No Yes Bacillus anthracis str. H9401   1 1
No Yes Bacillus anthracis str. CDC 684   1 1
No Yes Bacillus anthracis str. 'Ames Ancestor'   1 1
No Yes Bacillus anthracis str. Sterne   1 1
No Yes Bacillus anthracis str. Ames   1 1
No Yes Prevotella sp. oral taxon 299 str. F0039   1 1
No Yes Variovorax paradoxus B4   1 1
No Yes Xanthomonas campestris pv. raphani 756C   1 1
No Yes Xanthomonas campestris pv. campestris str. 8004   1 1
No Yes Xanthomonas campestris pv. campestris str. ATCC 33913   1 1
No Yes Shigella flexneri 2002017   3 3
No Yes Shigella flexneri 2a str. 2457T   3 3
No Yes Shigella dysenteriae 1617   1 1
No Yes Pseudomonas stutzeri DSM 10701   1 1
No Yes Methylophaga sp. JAM7   1 1
No Yes Aeropyrum camini SY1 = JCM 12091   1 1
No Yes Archaeoglobus sulfaticallidus PM70-1   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 1579 208
No Yes Homo sapiens (NCBI version) Human 646 76
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 307 33
No Yes Heliconius numata (Incomplete)   12 9
No Yes Loa loa v3.3 (Request) Eye worm 109 13
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 106 42
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 97 14
No Yes Moniliophthora perniciosa FA553 (Genome survey)   2 2
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   1 1
No Yes Homo sapiens 69_37 Human 400 38
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 260 32
No Yes Gorilla gorilla 69_3.1 Western gorilla 282 36
No Yes Pongo abelii 69_2 Sumatran orangutan 310 36
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 245 32
No Yes Macaca mulatta 69_1 Rhesus monkey 304 35
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 310 33
No Yes Otolemur garnettii 69_3 Small-eared galago 312 34
No Yes Microcebus murinus 69_1 Gray mouse lemur 241 28
No Yes Rattus norvegicus 69_3.4 Norway rat 297 34
No Yes Mus musculus 69_38 House mouse 266 34
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 259 30
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 288 33
No Yes Cavia porcellus 69_3 Domestic guinea pig 309 36
No Yes Oryctolagus cuniculus 69_2 Rabbit 257 39
No Yes Ochotona princeps 69 American pika 249 27
No Yes Tupaia belangeri 69 Northern tree shrew 240 28
No Yes Sus scrofa 69_10.2 Pig 232 39
No Yes Bos taurus 69_3.1 Cattle 304 34
No Yes Vicugna pacos 69_1 Alpaca 190 20
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 294 32
No Yes Mustela putorius furo 69_1.0 Domestic ferret 323 34
No Yes Ailuropoda melanoleuca 69_1 Giant panda 309 36
No Yes Canis familiaris 69_3.1 Dog 316 35
No Yes Felis catus 69 Domestic cat 181 28
No Yes Equus caballus 69_2 Horse 323 35
No Yes Myotis lucifugus 69_2.0 Little brown bat 255 38
No Yes Pteropus vampyrus 69_1 Large flying fox 289 32
No Yes Sorex araneus 69_1 European shrew 190 23
No Yes Erinaceus europaeus 69 Western European hedgehog 184 20
No Yes Procavia capensis 69_1 Cape rock hyrax 258 31
No Yes Loxodonta africana 69_3 African savanna elephant 262 34
No Yes Echinops telfairi 69 Small Madagascar hedgehog 228 29
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 205 25
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 165 18
No Yes Macropus eugenii 69_1.0 Tammar wallaby 248 27
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 250 34
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 325 34
No Yes Ornithorhynchus anatinus 69_5 Platypus 306 66
No Yes Petromyzon marinus 69_7.0 Sea lamprey 157 28
No Yes Meleagris gallopavo 69_2 Turkey 262 28
No Yes Gallus gallus 69_2 Chicken 284 29
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 257 33
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 233 33
No Yes Anolis carolinensis 69_2.0 Green anole 291 39
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 289 33
No Yes Latimeria chalumnae 69_1 Coelacanth 273 37
No Yes Gadus morhua 69_1 Atlantic cod 308 39
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 300 41
No Yes Takifugu rubripes 69_4 Torafugu 381 43
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 372 42
No Yes Oryzias latipes 69_1 Japanese medaka 317 38
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 349 45
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 373 40
No Yes Danio rerio 69_9 Zebrafish 340 50
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 24 7
No Yes Ciona intestinalis 69 Vase tunicate 65 10
No Yes Drosophila melanogaster 69_5 Fruit fly 124 10
No Yes Caenorhabditis elegans 69_215 Roundworm 103 11
No Yes 2_050719S (meta-genome)   1 1
No Yes 3_050719R (meta-genome)   2 2
No Yes 4_050719Q (meta-genome)   2 2
No Yes 5_050719P (meta-genome)   3 3
No Yes 6_Upper_euphotic (meta-genome)   1 1
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   1 1
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   1 1
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   5 5
No Yes Dump top (Dump top) (meta-genome)   3 3
No Yes Endophytic microbiome from Rice (meta-genome)   4 4
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)   1 1
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes Fungus garden combined (combined) (meta-genome)   2 2
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 09(Y) (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP8 from OSP Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP4 from Joseph's Coat Springs (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP9 from Dragon Spring, Norris Geyser Basin (meta-genome)   1 1
No Yes Human Gut Community Subject 7 (meta-genome)   2 2
No Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   1 1
No Yes NCBI 2017_08 genome   387404 34306
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   5 5
No Yes Protozoadb 2010_08 (Protozoadb)   14 12
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   4 4
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   3 3
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   10877 1400
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   159518 21102
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   2 2
No Yes Global Ocean Sampling Expedition (GOS)   39 34
No Yes NCBI plasmid sequences (Plasmids)   7 7
No Yes NCBI viral sequences (Viral)   1 1
No Yes PDB chains (SCOP 1.75) (PDB)   22 11
No Yes Protein Data Bank (all PDB sequenc)   131 69
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   213 213
No Yes TargetDB (Targets)   200 79
No Yes UniProt viral sequences (Viral)   1 1

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.