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  Home > Genomes > Pan troglodytes 76_2.1.4 > Complement control module/SCR domain domains


Complement control module/SCR domain superfamily domain assignments
in
Pan troglodytes 76_2.1.4

Assignment details

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Pan troglodytes 76_2.1.4 has 325 significant domains in 57 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSPTRP00000000271   0.00000000000000653   366-436   Complement control module/SCR domain  
  0.0000000000000375   300-369   Complement control module/SCR domain  
ENSPTRP00000002763   3.61e-16   262-327   Complement control module/SCR domain  
  8.2e-16   317-383   Complement control module/SCR domain  
  0.00000000000000104   565-630   Complement control module/SCR domain  
  0.0000000000000032   441-507   Complement control module/SCR domain  
  0.00000000000000445   503-569   Complement control module/SCR domain  
  0.00000000000000931   200-264   Complement control module/SCR domain  
  0.0000000000000181   378-445   Complement control module/SCR domain  
  0.0000000000000375   642-707   Complement control module/SCR domain  
  0.00000000000445   697-762   Complement control module/SCR domain  
ENSPTRP00000002764   0.0000000000000153   252-318   Complement control module/SCR domain  
  0.000000000000375   197-262   Complement control module/SCR domain  
ENSPTRP00000002766   0.00000000000000347   242-306   Complement control module/SCR domain  
  0.000000000000012   180-245   Complement control module/SCR domain  
  0.0000000000000121   302-376   Complement control module/SCR domain  
  0.0000000000000292   366-439   Complement control module/SCR domain  
  0.0000000000000389   423-490   Complement control module/SCR domain  
  0.000000000000751   488-549   Complement control module/SCR domain  
ENSPTRP00000002849   0.000000000138   1524-1598   Complement control module/SCR domain  
  0.00000514   1590-1647   Complement control module/SCR domain  
  0.0000128   1469-1530   Complement control module/SCR domain  
  0.00393   1417-1467   Complement control module/SCR domain  
ENSPTRP00000003002   5.77e-21   1166-1230   Complement control module/SCR domain  
  0.0000000000000598   144-216   Complement control module/SCR domain  
  0.000000000000354   1109-1168   Complement control module/SCR domain  
  0.000000000000418   867-927   Complement control module/SCR domain  
  0.000000000000783   1041-1103   Complement control module/SCR domain  
  0.00000000000125   629-686   Complement control module/SCR domain  
  0.00000000000216   85-146   Complement control module/SCR domain  
  0.00000000000243   689-744   Complement control module/SCR domain  
  0.00000000000337   924-985   Complement control module/SCR domain  
  0.0000000000959   982-1043   Complement control module/SCR domain  
  0.00000000131   561-624   Complement control module/SCR domain  
  0.00000000183   262-325   Complement control module/SCR domain  
  0.00000000256   508-572   Complement control module/SCR domain  
  0.00000000498   809-864   Complement control module/SCR domain  
  0.00000000524   390-450   Complement control module/SCR domain  
  0.0000000157   205-264   Complement control module/SCR domain  
  0.0000000256   454-512   Complement control module/SCR domain  
  0.0000000708   24-89   Complement control module/SCR domain  
  0.000183   324-384   Complement control module/SCR domain  
  0.0243   752-803   Complement control module/SCR domain  
ENSPTRP00000003004   0.00000000236   87-143   Complement control module/SCR domain  
  0.00000542   22-82   Complement control module/SCR domain  
ENSPTRP00000003008   1.09e-18   394-456   Complement control module/SCR domain  
  0.000000000000249   210-274   Complement control module/SCR domain  
  0.000000000498   94-151   Complement control module/SCR domain  
  0.00000000127   340-395   Complement control module/SCR domain  
  0.000000195   146-205   Complement control module/SCR domain  
  0.0000347   269-334   Complement control module/SCR domain  
  0.0000361   22-87   Complement control module/SCR domain  
ENSPTRP00000003010   1.31e-22   82-144   Complement control module/SCR domain  
  0.00000000000000181   25-84   Complement control module/SCR domain  
ENSPTRP00000003012   3.62e-19   530-592   Complement control module/SCR domain  
  0.000000000000473   473-532   Complement control module/SCR domain  
  0.000000000000747   229-286   Complement control module/SCR domain  
  0.000000000031   290-346   Complement control module/SCR domain  
  0.000000000115   411-466   Complement control module/SCR domain  
  0.00000000127   170-226   Complement control module/SCR domain  
  0.0000000485   109-166   Complement control module/SCR domain  
  0.00000445   47-114   Complement control module/SCR domain  
  0.00031   353-405   Complement control module/SCR domain  
ENSPTRP00000003013   1.89e-21   581-660   Complement control module/SCR domain  
  5.37e-20   453-533   Complement control module/SCR domain  
  0.000000000000017   206-268   Complement control module/SCR domain  
  0.00000000000013   333-389   Complement control module/SCR domain  
  0.00000000000288   396-455   Complement control module/SCR domain  
  0.00000000000747   273-327   Complement control module/SCR domain  
  0.000000000032   522-578   Complement control module/SCR domain  
  0.00000000826   154-214   Complement control module/SCR domain  
  0.0000000446   91-148   Complement control module/SCR domain  
  0.00000354   25-95   Complement control module/SCR domain  
ENSPTRP00000003228   4.18e-16   112-184   Complement control module/SCR domain  
  0.00000000000000208   173-236   Complement control module/SCR domain  
  0.0000000000000175   232-295   Complement control module/SCR domain  
  0.00000000000334   426-488   Complement control module/SCR domain  
  0.00000000000639   483-541   Complement control module/SCR domain  
  0.0000000000848   50-117   Complement control module/SCR domain  
  0.00000000278   299-368   Complement control module/SCR domain  
  0.00000104   365-430   Complement control module/SCR domain  
ENSPTRP00000003238   3.89e-19   525-594   Complement control module/SCR domain  
  1.36e-16   274-343   Complement control module/SCR domain  
  2.78e-16   776-838   Complement control module/SCR domain  
  5.14e-16   910-974   Complement control module/SCR domain  
  7.37e-16   409-472   Complement control module/SCR domain  
  9.73e-16   349-419   Complement control module/SCR domain  
  0.00000000000000181   661-723   Complement control module/SCR domain  
  0.00000000000000236   153-224   Complement control module/SCR domain  
  0.0000000000000113   600-670   Complement control module/SCR domain  
  0.0000000000000876   21-83   Complement control module/SCR domain  
  0.000000000000542   964-1028   Complement control module/SCR domain  
  0.000000000000931   88-149   Complement control module/SCR domain  
  0.00000000000195   845-904   Complement control module/SCR domain  
  0.0000000000124   214-285   Complement control module/SCR domain  
  0.000000032   740-787   Complement control module/SCR domain  
  0.0000135   491-536   Complement control module/SCR domain  
ENSPTRP00000003245   2.64e-19   1456-1528   Complement control module/SCR domain  
  2.29e-18   614-682   Complement control module/SCR domain  
  5.67e-18   103-175   Complement control module/SCR domain  
  5.98e-18   164-232   Complement control module/SCR domain  
  1.35e-17   1064-1132   Complement control module/SCR domain  
  5.56e-17   553-625   Complement control module/SCR domain  
  6.39e-17   1003-1075   Complement control module/SCR domain  
  0.00000000000000208   1517-1585   Complement control module/SCR domain  
  0.00000000000000445   1650-1712   Complement control module/SCR domain  
  0.00000000000000526   1197-1259   Complement control module/SCR domain  
  0.00000000000000556   1319-1388   Complement control module/SCR domain  
  0.00000000000000681   419-487   Complement control module/SCR domain  
  0.00000000000000681   869-937   Complement control module/SCR domain  
  0.0000000000000128   296-361   Complement control module/SCR domain  
  0.0000000000000216   746-810   Complement control module/SCR domain  
  0.0000000000000243   1848-1912   Complement control module/SCR domain  
  0.0000000000000459   1772-1841   Complement control module/SCR domain  
  0.000000000000278   1591-1655   Complement control module/SCR domain  
  0.000000000000473   239-302   Complement control module/SCR domain  
  0.000000000000695   1262-1330   Complement control module/SCR domain  
  0.000000000000792   1904-1966   Complement control module/SCR domain  
  0.000000000000931   689-752   Complement control module/SCR domain  
  0.00000000000121   1139-1201   Complement control module/SCR domain  
  0.00000000000417   1716-1783   Complement control module/SCR domain  
  0.00000000000445   813-880   Complement control module/SCR domain  
  0.00000000000459   363-430   Complement control module/SCR domain  
  0.000000000378   43-108   Complement control module/SCR domain  
  0.000000000405   493-559   Complement control module/SCR domain  
  0.000000000486   943-1009   Complement control module/SCR domain  
  0.0000000107   1395-1466   Complement control module/SCR domain  
ENSPTRP00000003252   3.34e-16   98-171   Complement control module/SCR domain  
  0.0000000000000025   223-287   Complement control module/SCR domain  
  0.00000000000108   155-225   Complement control module/SCR domain  
  0.0000000124   35-89   Complement control module/SCR domain  
ENSPTRP00000003828   0.00000000000053   31-96   Complement control module/SCR domain  
ENSPTRP00000003829   0.0000000000121   124-184   Complement control module/SCR domain  
  0.000000000681   23-82   Complement control module/SCR domain  
ENSPTRP00000007868   0.000079   190-236   Complement control module/SCR domain  
ENSPTRP00000010996   0.000000000297   41-102   Complement control module/SCR domain  
ENSPTRP00000012686   0.00000000000612   2160-2220   Complement control module/SCR domain  
ENSPTRP00000015265   0.00000000000000264   710-775   Complement control module/SCR domain  
  0.000000000000564   769-831   Complement control module/SCR domain  
  0.00000000000473   356-421   Complement control module/SCR domain  
  0.0000000000223   836-896   Complement control module/SCR domain  
  0.000000000222   532-596   Complement control module/SCR domain  
ENSPTRP00000016233   1.19e-20   264-345   Complement control module/SCR domain  
  8.2e-17   83-149   Complement control module/SCR domain  
  0.0000000000000594   205-267   Complement control module/SCR domain  
  0.00000000000153   140-214   Complement control module/SCR domain  
  0.0000000000877   22-93   Complement control module/SCR domain  
ENSPTRP00000018312   0.000000000000292   1213-1273   Complement control module/SCR domain  
ENSPTRP00000021175   4.31e-16   79-147   Complement control module/SCR domain  
ENSPTRP00000022456   0.00000000000745   696-765   Complement control module/SCR domain  
ENSPTRP00000027054   0.0000000000000126   300-370   Complement control module/SCR domain  
  0.0000595   367-423   Complement control module/SCR domain  
ENSPTRP00000028843   0.0000000000688   644-707   Complement control module/SCR domain  
  0.0000000472   699-754   Complement control module/SCR domain  
ENSPTRP00000029197   0.000000000125   3294-3352   Complement control module/SCR domain  
ENSPTRP00000030714   0.0000000000000806   84-144   Complement control module/SCR domain  
  0.00000000000104   150-206   Complement control module/SCR domain  
  0.00000528   24-92   Complement control module/SCR domain  
ENSPTRP00000030715   0.0000000000000334   97-158   Complement control module/SCR domain  
  0.000000000000639   164-220   Complement control module/SCR domain  
  0.00000334   44-84   Complement control module/SCR domain  
ENSPTRP00000034173   7.64e-20   1578-1646   Complement control module/SCR domain  
  2.56e-19   1934-2005   Complement control module/SCR domain  
  1.33e-18   1635-1704   Complement control module/SCR domain  
  1.01e-17   1818-1886   Complement control module/SCR domain  
  2.7e-17   1994-2063   Complement control module/SCR domain  
  6.95e-17   1693-1766   Complement control module/SCR domain  
  4.59e-16   1875-1945   Complement control module/SCR domain  
  7.92e-16   1519-1588   Complement control module/SCR domain  
  0.00000000000000181   290-354   Complement control module/SCR domain  
  0.00000000000000243   2114-2182   Complement control module/SCR domain  
  0.00000000000000264   2052-2109   Complement control module/SCR domain  
  0.00000000000000347   1392-1459   Complement control module/SCR domain  
  0.0000000000000195   115-185   Complement control module/SCR domain  
  0.0000000000000528   1750-1812   Complement control module/SCR domain  
  0.0000000000000877   1330-1403   Complement control module/SCR domain  
  0.000000000000117   985-1054   Complement control module/SCR domain  
  0.000000000000126   464-528   Complement control module/SCR domain  
  0.000000000000132   639-702   Complement control module/SCR domain  
  0.0000000000012   813-877   Complement control module/SCR domain  
  0.0000000000031   1156-1220   Complement control module/SCR domain  
  0.0000000000347   2173-2230   Complement control module/SCR domain  
  0.000000000292   1475-1530   Complement control module/SCR domain  
ENSPTRP00000035093   5.56e-21   3171-3242   Complement control module/SCR domain  
  7.42e-19   2816-2884   Complement control module/SCR domain  
  3.75e-18   3055-3123   Complement control module/SCR domain  
  3.78e-18   2873-2941   Complement control module/SCR domain  
  4.05e-18   2931-3004   Complement control module/SCR domain  
  5.98e-18   3112-3182   Complement control module/SCR domain  
  8.5e-17   3231-3300   Complement control module/SCR domain  
  2.78e-16   2757-2826   Complement control module/SCR domain  
  0.00000000000000189   2223-2292   Complement control module/SCR domain  
  0.00000000000000208   2630-2697   Complement control module/SCR domain  
  0.00000000000000347   3351-3419   Complement control module/SCR domain  
  0.00000000000000403   485-556   Complement control module/SCR domain  
  0.00000000000000459   2987-3048   Complement control module/SCR domain  
  0.00000000000000459   3290-3346   Complement control module/SCR domain  
  0.0000000000000181   2568-2641   Complement control module/SCR domain  
  0.0000000000000391   2051-2113   Complement control module/SCR domain  
  0.0000000000000432   1527-1591   Complement control module/SCR domain  
  0.0000000000000737   1009-1069   Complement control module/SCR domain  
  0.0000000000001   1700-1765   Complement control module/SCR domain  
  0.000000000000139   663-722   Complement control module/SCR domain  
  0.00000000000032   1877-1943   Complement control module/SCR domain  
  0.000000000000405   1182-1244   Complement control module/SCR domain  
  0.000000000000513   177-238   Complement control module/SCR domain  
  0.00000000000133   1353-1415   Complement control module/SCR domain  
  0.00000000000222   3410-3468   Complement control module/SCR domain  
  0.00000000000378   834-902   Complement control module/SCR domain  
  0.00000000000528   2704-2768   Complement control module/SCR domain  
  0.0000000000648   2394-2457   Complement control module/SCR domain  
ENSPTRP00000036093   0.000000000195   31-93   Complement control module/SCR domain  
ENSPTRP00000036386   0.000000000403   1412-1475   Complement control module/SCR domain  
  0.00000000347   1348-1420   Complement control module/SCR domain  
  0.0000000222   1286-1352   Complement control module/SCR domain  
  0.00000431   1217-1290   Complement control module/SCR domain  
ENSPTRP00000037386   0.0000000000000181   114-175   Complement control module/SCR domain  
  0.00000000000139   222-275   Complement control module/SCR domain  
  0.000000000584   77-129   Complement control module/SCR domain  
ENSPTRP00000037999   0.0000000000000057   116-178   Complement control module/SCR domain  
  0.0000000000000389   263-322   Complement control module/SCR domain  
  0.0000000306   78-126   Complement control module/SCR domain  
ENSPTRP00000039456   0.00000000000987   571-634   Complement control module/SCR domain  
  0.0000000292   626-682   Complement control module/SCR domain  
ENSPTRP00000041557   0.0000000000000275   744-802   Complement control module/SCR domain  
  0.0000000000011   808-867   Complement control module/SCR domain  
  0.0000000000361   392-453   Complement control module/SCR domain  
  0.00000000089   567-631   Complement control module/SCR domain  
ENSPTRP00000044519   4.19e-23   265-329   Complement control module/SCR domain  
  0.0000000000000973   208-267   Complement control module/SCR domain  
  0.000000000000958   146-202   Complement control module/SCR domain  
  0.00000000642   85-142   Complement control module/SCR domain  
  0.00000266   23-87   Complement control module/SCR domain  
ENSPTRP00000045194   0.00000000000000708   221-283   Complement control module/SCR domain  
  0.000000000000118   501-559   Complement control module/SCR domain  
  0.000000000000181   561-622   Complement control module/SCR domain  
  0.00000000000236   629-695   Complement control module/SCR domain  
  0.000216   337-388   Complement control module/SCR domain  
ENSPTRP00000048158   0.0000000000000876   296-366   Complement control module/SCR domain  
ENSPTRP00000049062   0.000000000000181   177-247   Complement control module/SCR domain  
  0.0000000000598   237-297   Complement control module/SCR domain  
ENSPTRP00000049082   1.81e-19   2144-2213   Complement control module/SCR domain  
  8.9e-18   3239-3308   Complement control module/SCR domain  
  1.07e-17   2773-2842   Complement control module/SCR domain  
  1.81e-17   1787-1856   Complement control module/SCR domain  
  1.95e-17   1961-2029   Complement control module/SCR domain  
  1.95e-17   2379-2449   Complement control module/SCR domain  
  2.64e-17   2831-2900   Complement control module/SCR domain  
  3.2e-17   2715-2784   Complement control module/SCR domain  
  3.34e-17   1845-1914   Complement control module/SCR domain  
  5e-17   2263-2331   Complement control module/SCR domain  
  1e-16   2496-2565   Complement control module/SCR domain  
  1.36e-16   1688-1746   Complement control module/SCR domain  
  1.39e-16   2889-2958   Complement control module/SCR domain  
  4.03e-16   2554-2621   Complement control module/SCR domain  
  4.59e-16   2671-2726   Complement control module/SCR domain  
  9.59e-16   1903-1968   Complement control module/SCR domain  
  0.00000000000000181   3416-3475   Complement control module/SCR domain  
  0.00000000000000236   3063-3130   Complement control module/SCR domain  
  0.00000000000000375   3298-3364   Complement control module/SCR domain  
  0.00000000000000598   2438-2507   Complement control module/SCR domain  
  0.0000000000000195   437-504   Complement control module/SCR domain  
  0.0000000000000445   1631-1699   Complement control module/SCR domain  
  0.000000000000089   2948-3010   Complement control module/SCR domain  
  0.000000000000709   376-447   Complement control module/SCR domain  
  0.00000000000101   2322-2390   Complement control module/SCR domain  
  0.00000000000125   2204-2268   Complement control module/SCR domain  
  0.00000000000153   3007-3073   Complement control module/SCR domain  
  0.00000000000334   2018-2086   Complement control module/SCR domain  
  0.00000000000723   3357-3425   Complement control module/SCR domain  
  0.0000000000118   3121-3188   Complement control module/SCR domain  
  0.000000000208   3181-3244   Complement control module/SCR domain  
  0.000000000347   2083-2150   Complement control module/SCR domain  
  0.0000057   496-553   Complement control module/SCR domain  
  0.000846   727-789   Complement control module/SCR domain  
ENSPTRP00000049223   0.000000000167   17-80   Complement control module/SCR domain  
ENSPTRP00000049798   2.22e-16   691-748   Complement control module/SCR domain  
ENSPTRP00000051123   0.000000000000181   179-238   Complement control module/SCR domain  
  0.00000000031   241-301   Complement control module/SCR domain  
  0.0000000011   55-111   Complement control module/SCR domain  
  0.0000000117   116-177   Complement control module/SCR domain  
ENSPTRP00000051230   2.88e-16   131-193   Complement control module/SCR domain  
  0.0000000000000236   80-148   Complement control module/SCR domain  
  0.0000000000973   22-87   Complement control module/SCR domain  
ENSPTRP00000051705   0.000000000431   809-868   Complement control module/SCR domain  
ENSPTRP00000052558   3.2e-18   2674-2742   Complement control module/SCR domain  
  1.16e-17   3091-3159   Complement control module/SCR domain  
  2.36e-17   2914-2981   Complement control module/SCR domain  
  1.32e-16   3030-3096   Complement control module/SCR domain  
  3.37e-16   2731-2798   Complement control module/SCR domain  
  5.94e-16   3210-3278   Complement control module/SCR domain  
  7.78e-16   2971-3041   Complement control module/SCR domain  
  0.0000000000000011   382-454   Complement control module/SCR domain  
  0.0000000000000112   2057-2125   Complement control module/SCR domain  
  0.0000000000000115   2590-2649   Complement control module/SCR domain  
  0.0000000000000216   2464-2531   Complement control module/SCR domain  
  0.0000000000000256   178-239   Complement control module/SCR domain  
  0.0000000000000405   1884-1946   Complement control module/SCR domain  
  0.000000000000105   2790-2857   Complement control module/SCR domain  
  0.000000000000181   2847-2907   Complement control module/SCR domain  
  0.000000000000222   3142-3204   Complement control module/SCR domain  
  0.000000000000236   906-966   Complement control module/SCR domain  
  0.00000000000027   1249-1312   Complement control module/SCR domain  
  0.000000000000292   2401-2468   Complement control module/SCR domain  
  0.000000000000417   1533-1600   Complement control module/SCR domain  
  0.000000000000556   560-622   Complement control module/SCR domain  
  0.00000000000297   2227-2291   Complement control module/SCR domain  
  0.00000000000445   1710-1773   Complement control module/SCR domain  
  0.00000000000486   731-799   Complement control module/SCR domain  
  0.00000000000806   3269-3328   Complement control module/SCR domain  
  0.0000000000103   1079-1141   Complement control module/SCR domain  
  0.0000000000136   2526-2601   Complement control module/SCR domain  
ENSPTRP00000054056   1.05e-18   95-167   Complement control module/SCR domain  
  2.64e-17   382-454   Complement control module/SCR domain  
  3.47e-16   156-224   Complement control module/SCR domain  
  4.33e-16   289-351   Complement control module/SCR domain  
  6.12e-16   443-512   Complement control module/SCR domain  
  0.0000000000000944   231-293   Complement control module/SCR domain  
  0.000000000526   35-97   Complement control module/SCR domain  
ENSPTRP00000054502   0.00000000129   33-95   Complement control module/SCR domain  
ENSPTRP00000054792   0.000000000000431   375-454   Complement control module/SCR domain  
  0.000000000000764   307-378   Complement control module/SCR domain  
ENSPTRP00000054795   0.000000000000584   347-423   Complement control module/SCR domain  
  0.00000000000737   286-350   Complement control module/SCR domain  
ENSPTRP00000056033   6.67e-19   162-234   Complement control module/SCR domain  
  1.75e-16   223-284   Complement control module/SCR domain  
  0.00000000000553   98-172   Complement control module/SCR domain  
  0.000000000148   36-102   Complement control module/SCR domain  
ENSPTRP00000058782   0.0000000149   34-96   Complement control module/SCR domain  
ENSPTRP00000059899   0.000000000124   410-467   Complement control module/SCR domain  
ENSPTRP00000060736   0.0000000334   139-197   Complement control module/SCR domain  
 
Weak hits:
ENSPTRP00000055139   0.0201   73-133   Complement control module/SCR domain  

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View all assignments containing a Complement control module/SCR domain domain in each group of genomes.

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Select to display   Genome       Domains   Proteins
No Yes ALL   312829 312829
No Yes Homo sapiens 76_38 Human 1435 333
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 325 57
No Yes Gorilla gorilla 76_3.1 Western gorilla 448 88
No Yes Pongo abelii 76_2 Sumatran orangutan 317 56
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 308 50
No Yes Papio anubis 76 Olive baboon 302 59
No Yes Macaca mulatta 76_1 Rhesus monkey 637 126
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 608 130
No Yes Otolemur garnettii 76_3 Small-eared galago 278 49
No Yes Microcebus murinus 76_1 Gray mouse lemur 206 43
No Yes Rattus norvegicus 76_5.0 Norway rat 345 72
No Yes Mus musculus 76_38 House mouse 583 113
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 212 40
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 244 48
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 276 49
No Yes Cavia porcellus 76_3 Domestic guinea pig 316 64
No Yes Oryctolagus cuniculus 76_2 Rabbit 296 54
No Yes Ochotona princeps 76 American pika 235 42
No Yes Tupaia belangeri 76 Northern tree shrew 223 41
No Yes Sus scrofa 76_10.2 Pig 330 84
No Yes Bos taurus 76_3.1 Cattle 367 70
No Yes Ovis aries 76_3.1 Sheep 384 65
No Yes Vicugna pacos 76_1 Alpaca 237 37
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 248 48
No Yes Mustela putorius furo 76_1.0 Domestic ferret 338 59
No Yes Ailuropoda melanoleuca 76_1 Giant panda 376 68
No Yes Canis familiaris 76_3.1 Dog 524 79
No Yes Felis catus 76_6.2 Domestic cat 293 60
No Yes Equus caballus 76_2 Horse 670 77
No Yes Myotis lucifugus 76_2.0 Little brown bat 436 79
No Yes Pteropus vampyrus 76_1 Large flying fox 266 48
No Yes Sorex araneus 76_1 European shrew 180 32
No Yes Erinaceus europaeus 76 Western European hedgehog 185 40
No Yes Procavia capensis 76_1 Cape rock hyrax 200 44
No Yes Loxodonta africana 76_3 African savanna elephant 368 73
No Yes Echinops telfairi 76 Small Madagascar hedgehog 224 40
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 398 71
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 188 30
No Yes Macropus eugenii 76_1.0 Tammar wallaby 189 42
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 281 61
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 292 53
No Yes Ornithorhynchus anatinus 76_5 Platypus 317 73
No Yes Saccoglossus kowalevskii v3.0   436 89
No Yes Petromyzon marinus 76_7.0 Sea lamprey 116 22
No Yes Meleagris gallopavo 76_2 Turkey 235 53
No Yes Gallus gallus 76_4 Chicken 257 40
No Yes Anas platyrhynchos 76_1.0 Mallard 260 45
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 255 50
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 243 46
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 320 56
No Yes Anolis carolinensis 76_2.0 Green anole 288 48
No Yes Xenopus laevis African clawed frog 169 68
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 282 60
No Yes Latimeria chalumnae 76_1 Coelacanth 210 59
No Yes Lepisosteus oculatus 76 Spotted gar 357 61
No Yes Gadus morhua 76_1 Atlantic cod 209 51
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 385 69
No Yes Takifugu rubripes 76_4 Torafugu 1131 209
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 343 72
No Yes Oryzias latipes 76_1 Japanese medaka 280 61
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 267 52
No Yes Poecilia formosa 76 Amazon molly 273 52
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 372 77
No Yes Astyanax mexicanus 76 Mexican tetra 274 73
No Yes Danio rerio 76_9 Zebrafish 514 124
No Yes Oikopleura dioica   95 41
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 702 114
No Yes Ciona intestinalis 76 Vase tunicate 377 94
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 760 248
No Yes Adineta vaga   31 10
No Yes Octopus bimaculoides 280   214 50
No Yes Crassostrea gigas 22 Pacific oyster 252 106
No Yes Lottia gigantea Owl limpet 351 126
No Yes Helobdella robusta   57 11
No Yes Capitella sp. I   352 80
No Yes Danaus plexippus OGS1.0 Monarch butterfly 39 12
No Yes Heliconius melpomene Postman butterfly 40 12
No Yes Bombyx mori Domestic silkworm 35 11
No Yes Nasonia vitripennis Jewel wasp 42 10
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 69 16
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 60 19
No Yes Linepithema humile v1.1 Argentine ant 60 15
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 51 14
No Yes Solenopsis invicta v.2.2.3 Red fire ant 37 12
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 54 13
No Yes Atta cephalotes v1.1   55 15
No Yes Camponotus floridanus v3.3 Florida carpenter ant 53 13
No Yes Lucilia cuprina Australian sheep blowfly 44 9
No Yes Drosophila grimshawi 1.3   55 14
No Yes Drosophila willistoni 1.3   49 12
No Yes Drosophila pseudoobscura 2.13   53 15
No Yes Drosophila persimilis 1.3   46 13
No Yes Drosophila suzukii   53 14
No Yes Drosophila yakuba 1.3   56 17
No Yes Drosophila simulans 1.3   45 15
No Yes Drosophila sechellia 1.3   51 16
No Yes Drosophila melanogaster 76_5 Fruit fly 185 41
No Yes Drosophila erecta 1.3   56 17
No Yes Drosophila ananassae 1.3   48 11
No Yes Drosophila virilis 1.2   50 11
No Yes Drosophila mojavensis 1.3   47 11
No Yes Megaselia scalaris 22   19 9
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 56 18
No Yes Culex pipiens quinquefasciatus Southern house mosquito 49 16
No Yes Anopheles darlingi 22 American malaria mosquito 28 5
No Yes Anopheles gambiae 49_3j African malaria mosquito 51 14
No Yes Tribolium castaneum 3.0 Red flour beetle 75 17
No Yes Pediculus humanus corporis (Early assembly) Human body louse 54 11
No Yes Acyrthosiphon pisum Pea aphid 45 10
No Yes Rhodnius prolixus 22   40 11
No Yes Daphnia pulex Common water flea 108 24
No Yes Strigamia maritima 22   123 38
No Yes Sarcoptes scabiei   48 13
No Yes Tetranychus urticae Two-spotted spider mite 87 25
No Yes Ixodes scapularis (Preliminary) Black-legged tick 90 40
No Yes Pristionchus pacificus   14 6
No Yes Meloidogyne incognita Southern root-knot nematode 73 27
No Yes Meloidogyne hapla   11 5
No Yes Onchocerca volvulus 22   50 14
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 42 18
No Yes Caenorhabditis japonica   45 13
No Yes Caenorhabditis brenneri   69 10
No Yes Caenorhabditis remanei   49 12
No Yes Caenorhabditis elegans 76_235 Roundworm 126 19
No Yes Caenorhabditis briggsae 2   45 8
No Yes Trichinella spiralis 22   28 10
No Yes Hymenolepis microstoma   11 5
No Yes Echinococcus multilocularis   8 2
No Yes Echinococcus granulosus   9 2
No Yes Taenia solium Pork tapeworm 9 3
No Yes Schistosoma mansoni   6 3
No Yes Mnemiopsis leidyi Sea walnut 262 110
No Yes Acropora digitifera v1.0   343 78
No Yes Nematostella vectensis 1.0 Starlet sea anemone 120 33
No Yes Hydra vulgaris   48 17
No Yes Amphimedon queenslandica   273 48
No Yes Trichoplax adhaerens   7 2
No Yes Proterospongia sp. ATCC 50818   102 32
No Yes Monosiga brevicollis   30 12
No Yes Sphaeroforma arctica JP610   1 1
No Yes Capsaspora owczarzaki ATCC 30864   128 20
No Yes Micromonas pusilla CCMP1545 v3.0   1 1
No Yes Thecamonas trahens ATCC 50062   227 38
No Yes Pythium iwayamai DAOM BR242034 22   1 1
No Yes Pythium arrhenomanes ATCC 12531 22   1 1
No Yes Pythium ultimum v1.7-2   1 1
No Yes Pythium aphanidermatum DAOM BR444 22   1 1
No Yes Pythium irregulare DAOM BR486 22   1 1
No Yes Pythium vexans DAOM BR484 22   1 1
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 1 1
No Yes Phytophthora infestans T30-4   1 1
No Yes Perkinsus marinus ATCC 50983   2 1
No Yes Cryptosporidium hominis   2 2
No Yes Cryptosporidium muris   2 2
No Yes Cryptosporidium parvum Iowa II   2 2
No Yes Neospora caninum   2 2
No Yes Toxoplasma gondii VEG   1 1
No Yes Toxoplasma gondii ME49   2 2
No Yes Plasmodium falciparum 3D7   1 1
No Yes Plasmodium vivax SaI-1 7.0   1 1
No Yes Plasmodium knowlesi strain H   1 1
No Yes Plasmodium yoelii ssp. yoelii 1   2 2
No Yes Plasmodium chabaudi   1 1
No Yes Plasmodium berghei ANKA   1 1
No Yes Symbiodinium minutum clade B1 v1.2   29 17
No Yes Guillardia theta CCMP2712 v1.0   32 13
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 359 80
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 155 34
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 60 15
No Yes Ascaris suum Victoria/Ghent Pig roundworm 43 11
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 53 14
No Yes Neospora caninum Nc-Liverpool 6.2   2 2
No Yes Plasmodium falciparum HB3   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 1543 346
No Yes Homo sapiens (NCBI version) Human 592 109
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 294 55
No Yes Heliconius numata (Incomplete)   2 2
No Yes Loa loa v3.3 (Request) Eye worm 46 12
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 38 17
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 31 11
No Yes Homo sapiens 69_37 Human 414 76
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 322 54
No Yes Gorilla gorilla 69_3.1 Western gorilla 314 51
No Yes Pongo abelii 69_2 Sumatran orangutan 311 54
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 265 46
No Yes Macaca mulatta 69_1 Rhesus monkey 285 54
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 307 53
No Yes Otolemur garnettii 69_3 Small-eared galago 275 47
No Yes Microcebus murinus 69_1 Gray mouse lemur 206 43
No Yes Rattus norvegicus 69_3.4 Norway rat 299 55
No Yes Mus musculus 69_38 House mouse 291 58
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 212 40
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 236 47
No Yes Cavia porcellus 69_3 Domestic guinea pig 260 47
No Yes Oryctolagus cuniculus 69_2 Rabbit 290 51
No Yes Ochotona princeps 69 American pika 235 42
No Yes Tupaia belangeri 69 Northern tree shrew 223 41
No Yes Sus scrofa 69_10.2 Pig 266 54
No Yes Bos taurus 69_3.1 Cattle 301 54
No Yes Vicugna pacos 69_1 Alpaca 237 37
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 248 48
No Yes Mustela putorius furo 69_1.0 Domestic ferret 311 58
No Yes Ailuropoda melanoleuca 69_1 Giant panda 286 57
No Yes Canis familiaris 69_3.1 Dog 292 48
No Yes Felis catus 69 Domestic cat 175 42
No Yes Equus caballus 69_2 Horse 323 55
No Yes Myotis lucifugus 69_2.0 Little brown bat 396 71
No Yes Pteropus vampyrus 69_1 Large flying fox 266 48
No Yes Sorex araneus 69_1 European shrew 180 32
No Yes Erinaceus europaeus 69 Western European hedgehog 185 40
No Yes Procavia capensis 69_1 Cape rock hyrax 200 44
No Yes Loxodonta africana 69_3 African savanna elephant 293 55
No Yes Echinops telfairi 69 Small Madagascar hedgehog 224 40
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 204 43
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 188 30
No Yes Macropus eugenii 69_1.0 Tammar wallaby 189 42
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 212 45
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 279 52
No Yes Ornithorhynchus anatinus 69_5 Platypus 277 64
No Yes Petromyzon marinus 69_7.0 Sea lamprey 113 21
No Yes Meleagris gallopavo 69_2 Turkey 205 43
No Yes Gallus gallus 69_2 Chicken 252 42
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 250 47
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 269 48
No Yes Anolis carolinensis 69_2.0 Green anole 258 43
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 243 49
No Yes Latimeria chalumnae 69_1 Coelacanth 174 47
No Yes Gadus morhua 69_1 Atlantic cod 193 47
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 248 53
No Yes Takifugu rubripes 69_4 Torafugu 249 49
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 270 53
No Yes Oryzias latipes 69_1 Japanese medaka 257 51
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 267 52
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 312 58
No Yes Danio rerio 69_9 Zebrafish 338 71
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 360 70
No Yes Ciona intestinalis 69 Vase tunicate 368 92
No Yes Drosophila melanogaster 69_5 Fruit fly 55 15
No Yes Caenorhabditis elegans 69_215 Roundworm 49 10
No Yes Endophytic microbiome from Rice (meta-genome)   1 1
No Yes NCBI 2017_08 genome   135945 27302
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   2 1
No Yes Protozoadb 2010_08 (Protozoadb)   24 24
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   10951 2334
No Yes Termite Protist Endosymbiont Community (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   84109 19171
No Yes Global Ocean Sampling Expedition (GOS)   50 31
No Yes NCBI viral sequences (Viral)   117 36
No Yes PDB chains (SCOP 1.75) (PDB)   82 40
No Yes Protein Data Bank (all PDB sequenc)   684 262
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   1247 1247
No Yes TargetDB (Targets)   314 85
No Yes UniProt viral sequences (Viral)   446 138

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.