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Nuclear receptor ligand-binding domain superfamily domain assignments
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TargetDB

Assignment details

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TargetDB (Targets) has 240 significant domains in 239 proteins.

     

Sequence ID   Evalue   Region   Family  
232600   2.75e-24   338-573   Nuclear receptor ligand-binding domain  
232601   0.000000000155   337-479   Nuclear receptor ligand-binding domain  
944   1.57e-23   2-105   Nuclear receptor ligand-binding domain  
AAA93297   8.1e-32   176-265,420-549   Nuclear receptor ligand-binding domain  
AAA96057   9.44e-33   303-551   Nuclear receptor ligand-binding domain  
AAA96982   6.03e-31   251-491   Nuclear receptor ligand-binding domain  
AAA96983   9.44e-33   303-551   Nuclear receptor ligand-binding domain  
AAA96984   2.75e-24   338-573   Nuclear receptor ligand-binding domain  
AAC77795   6.42e-31   251-491   Nuclear receptor ligand-binding domain  
AAD03681   1.84e-41   253-488   Nuclear receptor ligand-binding domain  
AAD03682   2.75e-24   338-573   Nuclear receptor ligand-binding domain  
AAD03683   0.000000199   206-381   Nuclear receptor ligand-binding domain  
AAD03684   7.21e-28   318-558   Nuclear receptor ligand-binding domain  
AAD03689   4.68e-34   141-384   Nuclear receptor ligand-binding domain  
AAD34462   6.95e-18   362-397,539-750   Nuclear receptor ligand-binding domain  
AAD34463   5.64e-18   303-338,480-691   Nuclear receptor ligand-binding domain  
AAD34464   6.16e-19   35-264   Nuclear receptor ligand-binding domain  
AAD55066   0.00000000000288   169-320   Nuclear receptor ligand-binding domain  
C02B4.2   7.47e-38   158-386   Nuclear receptor ligand-binding domain  
C03G6.10   1.84e-37   156-355   Nuclear receptor ligand-binding domain  
C03G6.8   4.98e-39   151-378   Nuclear receptor ligand-binding domain  
C05G6.1   5.77e-33   85-310   Nuclear receptor ligand-binding domain  
C06B8.1   9.66e-21   149-337   Nuclear receptor ligand-binding domain  
C06C6.4   0.00000000000000319   129-348   Nuclear receptor ligand-binding domain  
C06C6.5A   0.0000000000000322   172-344   Nuclear receptor ligand-binding domain  
C06G3.1   5.79e-32   131-422   Nuclear receptor ligand-binding domain  
C08F8.8   0.00000000047   92-305   Nuclear receptor ligand-binding domain  
C11G6.4   3.18e-43   123-373   Nuclear receptor ligand-binding domain  
C12D5.2   8e-39   172-359   Nuclear receptor ligand-binding domain  
C13C4.1   9.83e-44   195-392   Nuclear receptor ligand-binding domain  
C17A2.1   2.49e-21   124-326   Nuclear receptor ligand-binding domain  
C17E7.1   0.00000177   146-205   Nuclear receptor ligand-binding domain  
C17E7.8   2.75e-39   131-370   Nuclear receptor ligand-binding domain  
C26B2.3   2.75e-42   230-466   Nuclear receptor ligand-binding domain  
C26B2.4   4.98e-26   164-367   Nuclear receptor ligand-binding domain  
C27C7.3   8.67e-18   133-313   Nuclear receptor ligand-binding domain  
C27C7.8   3.37e-21   2-174   Nuclear receptor ligand-binding domain  
C29E6.5   7.58e-17   230-428   Nuclear receptor ligand-binding domain  
C29F9.13   3.87e-21   43-140   Nuclear receptor ligand-binding domain  
C33G8.10   9.79e-22   124-337   Nuclear receptor ligand-binding domain  
C33G8.12   2.78e-16   165-341   Nuclear receptor ligand-binding domain  
C33G8.6   5.49e-25   106-350   Nuclear receptor ligand-binding domain  
C33G8.8   1.47e-18   120-341   Nuclear receptor ligand-binding domain  
C33G8.9   7.62e-23   132-332   Nuclear receptor ligand-binding domain  
C38C3.9   5.77e-41   166-396   Nuclear receptor ligand-binding domain  
C41G6.5   0.0000000000000219   194-364   Nuclear receptor ligand-binding domain  
C45E5.6   8.91e-38   278-524   Nuclear receptor ligand-binding domain  
C47F8.2   1.42e-16   170-315   Nuclear receptor ligand-binding domain  
C47F8.8   1.46e-18   135-345   Nuclear receptor ligand-binding domain  
C49D10.2   1.7e-38   136-355   Nuclear receptor ligand-binding domain  
C49D10.6   1.71e-23   124-341   Nuclear receptor ligand-binding domain  
C54C8.1   1.16e-24   160-354   Nuclear receptor ligand-binding domain  
C54E10.5   2.87e-35   170-419   Nuclear receptor ligand-binding domain  
C54F6.8   3.15e-40   115-347   Nuclear receptor ligand-binding domain  
C56E10.4   3.11e-27   55-101,160-355   Nuclear receptor ligand-binding domain  
E02H1.7   2.36e-41   245-475   Nuclear receptor ligand-binding domain  
E02H9.8   4.72e-35   189-452   Nuclear receptor ligand-binding domain  
F08D12.14   5.24e-30   179-372   Nuclear receptor ligand-binding domain  
F10G2.9   0.0000000000263   11-80   Nuclear receptor ligand-binding domain  
F14A5.1   8.44e-23   202-386   Nuclear receptor ligand-binding domain  
F14H3.11   7.14e-22   94-331   Nuclear receptor ligand-binding domain  
F16B12.8   2.26e-38   120-358   Nuclear receptor ligand-binding domain  
F16B4.1   1.05e-25   177-418   Nuclear receptor ligand-binding domain  
F16B4.11   1.53e-26   204-428   Nuclear receptor ligand-binding domain  
F16B4.12A   1.52e-30   191-431   Nuclear receptor ligand-binding domain  
F16B4.9   1.1e-28   170-420   Nuclear receptor ligand-binding domain  
F21D12.1B   1.57e-22   166-395   Nuclear receptor ligand-binding domain  
F25E5.6   9.7e-18   161-283   Nuclear receptor ligand-binding domain  
F31F4.12   1.31e-40   159-394   Nuclear receptor ligand-binding domain  
F32B6.1   1.84e-41   253-488   Nuclear receptor ligand-binding domain  
F33E11.1   6.98e-52   131-369   Nuclear receptor ligand-binding domain  
F35E8.12   1.75e-21   95-332   Nuclear receptor ligand-binding domain  
F36A4.14   6.29e-27   162-364   Nuclear receptor ligand-binding domain  
F36D3.2   1.03e-34   166-421   Nuclear receptor ligand-binding domain  
F38H12.3   1.97e-42   189-404   Nuclear receptor ligand-binding domain  
F41B5.10   2.89e-33   168-393   Nuclear receptor ligand-binding domain  
F41D3.1   1.87e-20   113-321   Nuclear receptor ligand-binding domain  
F43C1.4   1.57e-33   200-452   Nuclear receptor ligand-binding domain  
F44A6.2A   6.03e-31   251-491   Nuclear receptor ligand-binding domain  
F44C4.2   1.87e-24   172-414   Nuclear receptor ligand-binding domain  
F44C8.10   2.18e-37   157-402   Nuclear receptor ligand-binding domain  
F44C8.11   1.27e-33   158-400   Nuclear receptor ligand-binding domain  
F44C8.2   2.05e-37   161-405   Nuclear receptor ligand-binding domain  
F44C8.3   1.26e-37   147-393   Nuclear receptor ligand-binding domain  
F44C8.4   1.24e-38   168-392   Nuclear receptor ligand-binding domain  
F44C8.6   2.42e-36   162-405   Nuclear receptor ligand-binding domain  
F44C8.8   5.84e-35   184-404   Nuclear receptor ligand-binding domain  
F44C8.A   2.42e-36   162-405   Nuclear receptor ligand-binding domain  
F44E7.8   2.21e-35   172-407   Nuclear receptor ligand-binding domain  
F44G3.9   0.000000104   162-303   Nuclear receptor ligand-binding domain  
F47C10.1   2.62e-40   123-375   Nuclear receptor ligand-binding domain  
F47C10.3   2.1e-50   130-366   Nuclear receptor ligand-binding domain  
F47C10.4   3.54e-44   123-353   Nuclear receptor ligand-binding domain  
F47C10.7   2.75e-44   116-350   Nuclear receptor ligand-binding domain  
F48G7.11   5.45e-30   174-403   Nuclear receptor ligand-binding domain  
F54B8.2   1.44e-38   23-249   Nuclear receptor ligand-binding domain  
F57A10.5   1.57e-47   238-420   Nuclear receptor ligand-binding domain  
F57A8.5   2.83e-38   148-351   Nuclear receptor ligand-binding domain  
F57G8.6   1.56e-36   152-378   Nuclear receptor ligand-binding domain  
F58G6.5   3.93e-43   221-447   Nuclear receptor ligand-binding domain  
F59E11.11   9.96e-35   175-418   Nuclear receptor ligand-binding domain  
GO.102127   6.03e-91   10-304   Nuclear receptor ligand-binding domain  
GO.103306   4.08e-91   10-304   Nuclear receptor ligand-binding domain  
GO.111246   4.4e-88   10-257   Nuclear receptor ligand-binding domain  
GO.45105   9.96e-65   26-40,82-322   Nuclear receptor ligand-binding domain  
GO.81824   9.71e-65   229-469   Nuclear receptor ligand-binding domain  
G_YK4041   6.55e-46   172-389   Nuclear receptor ligand-binding domain  
G_YK8564   2.49e-33   166-413   Nuclear receptor ligand-binding domain  
G_YK8799   2.23e-51   93-341   Nuclear receptor ligand-binding domain  
H01A20.1   2.23e-28   228-459   Nuclear receptor ligand-binding domain  
H10E21.3   4.46e-38   233-464   Nuclear receptor ligand-binding domain  
H12C20.3   3.28e-40   152-381   Nuclear receptor ligand-binding domain  
H22D14.1   6.12e-23   152-336   Nuclear receptor ligand-binding domain  
HR3061   1.07e-70   152-407   Nuclear receptor ligand-binding domain  
HR3061A   6.03e-70   12-239   Nuclear receptor ligand-binding domain  
HR3061C   3.67e-62   2-183   Nuclear receptor ligand-binding domain  
HR4464   1.7e-82   240-503   Nuclear receptor ligand-binding domain  
HR4469   6.42e-64   259-485   Nuclear receptor ligand-binding domain  
HR4533   3.02e-63   530-776   Nuclear receptor ligand-binding domain  
HR4563   6.42e-70   305-544   Nuclear receptor ligand-binding domain  
HR4643   5.77e-83   201-458   Nuclear receptor ligand-binding domain  
HR4675   1.1e-62   617-643,674-913   Nuclear receptor ligand-binding domain  
HR4685   2.75e-63   262-498   Nuclear receptor ligand-binding domain  
HR4725   1.7e-65   673-917   Nuclear receptor ligand-binding domain  
HR4734   1.84e-59   147-376   Nuclear receptor ligand-binding domain  
HR4751   4.72e-84   189-457   Nuclear receptor ligand-binding domain  
HR4793   1.07e-65   338-596   Nuclear receptor ligand-binding domain  
HR4801   5.11e-71   315-547   Nuclear receptor ligand-binding domain  
HR6377   3.54e-71   145-400   Nuclear receptor ligand-binding domain  
IGBMC-0005-000   1.26e-69   315-547   Nuclear receptor ligand-binding domain  
IGBMC-0006-000   2.75e-63   262-498   Nuclear receptor ligand-binding domain  
IGBMC-0007-000   2.75e-71   2-242   Nuclear receptor ligand-binding domain  
IGBMC-0008-000   1.97e-87   12-276   Nuclear receptor ligand-binding domain  
IGBMC-0009-000   5.9e-70   12-251   Nuclear receptor ligand-binding domain  
IGBMC-0010-000   1.44e-64   14-250   Nuclear receptor ligand-binding domain  
IGBMC-0012-000   2.88e-75   137-415   Nuclear receptor ligand-binding domain  
IGBMC-0014-000   1.3e-72   334-596   Nuclear receptor ligand-binding domain  
IGBMC-0017-000   5.77e-83   201-458   Nuclear receptor ligand-binding domain  
IGBMC-0018-000   2.1e-77   175-457   Nuclear receptor ligand-binding domain  
IGBMC-0019-000   2.1e-77   175-457   Nuclear receptor ligand-binding domain  
IGBMC-0058-000   9.96e-74   7-240   Nuclear receptor ligand-binding domain  
IGBMC-0059-000   2.49e-71   4-225   Nuclear receptor ligand-binding domain  
IGBMC-0062-000   2.1e-62   226-252,281-519   Nuclear receptor ligand-binding domain  
IGBMC-0078-000   1.03e-102   178-416   Nuclear receptor ligand-binding domain  
IGBMC-0086-000   8.91e-73   302-534   Nuclear receptor ligand-binding domain  
IGBMC-0087-000   4.33e-76   136-402   Nuclear receptor ligand-binding domain  
IGBMC-0089-000   3.8e-71   438-652   Nuclear receptor ligand-binding domain  
IGBMC-0090-000   1.17e-68   305-528   Nuclear receptor ligand-binding domain  
IGBMC-0091-000   4.46e-67   246-495   Nuclear receptor ligand-binding domain  
IGBMC-0092-000   5.51e-70   272-511   Nuclear receptor ligand-binding domain  
IGBMC-0093-000   3.02e-70   210-450   Nuclear receptor ligand-binding domain  
IGBMC-0094-000   5.9e-58   272-504   Nuclear receptor ligand-binding domain  
IGBMC-0106-000   3.15e-66   282-543   Nuclear receptor ligand-binding domain  
IGBMC-0107-000   1.04e-70   219-479   Nuclear receptor ligand-binding domain  
IGBMC-0108-000   4.06e-67   211-458   Nuclear receptor ligand-binding domain  
IGBMC-0110-000   3.15e-72   453-671   Nuclear receptor ligand-binding domain  
IGBMC-0111-000   1.97e-72   352-570   Nuclear receptor ligand-binding domain  
IGBMC-0112-000   2.62e-71   229-443   Nuclear receptor ligand-binding domain  
IGBMC-0113-000   1.48e-91   124-422   Nuclear receptor ligand-binding domain  
IGBMC-0114-000   1.34e-85   156-448   Nuclear receptor ligand-binding domain  
IGBMC-0115-000   1.97e-84   167-435   Nuclear receptor ligand-binding domain  
IGBMC-1003-000   3.8e-78   137-415   Nuclear receptor ligand-binding domain  
IGBMC-1013-000   1.07e-65   338-596   Nuclear receptor ligand-binding domain  
IGBMC-1014-000   6.03e-56   365-626   Nuclear receptor ligand-binding domain  
IGBMC-1015-000   8e-68   169-195,223-460   Nuclear receptor ligand-binding domain  
IGBMC-1016-000   1.97e-70   174-432   Nuclear receptor ligand-binding domain  
IGBMC-1017-000   3.41e-67   152-166,301-539   Nuclear receptor ligand-binding domain  
IGBMC-1018-000   2.1e-60   59-94,220-459   Nuclear receptor ligand-binding domain  
IGBMC-1019-000   8.91e-50   145-156,247-481   Nuclear receptor ligand-binding domain  
IGBMC-1020-000   9.58e-65   229-469   Nuclear receptor ligand-binding domain  
K06A1.4   2.62e-41   235-242,346-575   Nuclear receptor ligand-binding domain  
K06B4.1   9.57e-43   94-335   Nuclear receptor ligand-binding domain  
K06B4.2   1.2e-40   102-335   Nuclear receptor ligand-binding domain  
K06B4.5   2.75e-41   87-325   Nuclear receptor ligand-binding domain  
K06B4.7   3.02e-41   98-336   Nuclear receptor ligand-binding domain  
K06B4.8   2.75e-42   119-350   Nuclear receptor ligand-binding domain  
K08A2.7   1.44e-34   193-420   Nuclear receptor ligand-binding domain  
K08A2.A   1.44e-34   193-420   Nuclear receptor ligand-binding domain  
K08H2.8   1.7e-29   172-411   Nuclear receptor ligand-binding domain  
K10C3.6   3.41e-48   5-27,185-395   Nuclear receptor ligand-binding domain  
K12H6.1   5.24e-30   179-372   Nuclear receptor ligand-binding domain  
M02H5.1   3.17e-37   160-416   Nuclear receptor ligand-binding domain  
M02H5.7   6.97e-35   166-406   Nuclear receptor ligand-binding domain  
NYSGXRC-T307   1.44e-29   357-640   Nuclear receptor ligand-binding domain  
R02D1.1   1.09e-35   158-361   Nuclear receptor ligand-binding domain  
R04B5.3   2.82e-26   135-382   Nuclear receptor ligand-binding domain  
R04B5.4   6.3e-37   188-449   Nuclear receptor ligand-binding domain  
R07B7.14   2.23e-39   172-404   Nuclear receptor ligand-binding domain  
R07B7.15   1.57e-39   165-409   Nuclear receptor ligand-binding domain  
R09G11.2B   1.1e-42   217-422   Nuclear receptor ligand-binding domain  
R11G11.1   0.00000000000000104   163-270   Nuclear receptor ligand-binding domain  
T01B10.4A   7.34e-37   135-341   Nuclear receptor ligand-binding domain  
T01G6.5   2.18e-30   149-378   Nuclear receptor ligand-binding domain  
T01G6.6   2.02e-31   176-399   Nuclear receptor ligand-binding domain  
T01G6.8   3.74e-40   206-438   Nuclear receptor ligand-binding domain  
T03E6.3   8.83e-18   116-185,222-362   Nuclear receptor ligand-binding domain  
T05B4.2   4.54e-32   133-372   Nuclear receptor ligand-binding domain  
T06C12.13   1.4e-36   167-413   Nuclear receptor ligand-binding domain  
T06C12.7   1.43e-29   19-24,169-414   Nuclear receptor ligand-binding domain  
T07C5.3   8.91e-39   78-308   Nuclear receptor ligand-binding domain  
T09A12.4   5.51e-29   456-686   Nuclear receptor ligand-binding domain  
T13F3.3   6.59e-22   133-352   Nuclear receptor ligand-binding domain  
T19A5.4   3.87e-36   180-424   Nuclear receptor ligand-binding domain  
T20C7.A   1.36e-22   23-158   Nuclear receptor ligand-binding domain  
T26H2.9   2.49e-27   212-460   Nuclear receptor ligand-binding domain  
T27B7.1   9.65e-31   179-412   Nuclear receptor ligand-binding domain  
T27B7.3   4.98e-41   157-383   Nuclear receptor ligand-binding domain  
T27B7.6   2.02e-43   166-392   Nuclear receptor ligand-binding domain  
W00599   2.1e-67   28-267   Nuclear receptor ligand-binding domain  
W01D2.2A   3.41e-25   173-403   Nuclear receptor ligand-binding domain  
W05B5.3   3.8e-17   211-417   Nuclear receptor ligand-binding domain  
WR126   2.36e-18   14-124   Nuclear receptor ligand-binding domain  
Y110A2B.A   5.24e-30   179-372   Nuclear receptor ligand-binding domain  
Y15E3A.1   6.03e-30   170-453   Nuclear receptor ligand-binding domain  
Y17D7A.3   8.85e-36   143-396   Nuclear receptor ligand-binding domain  
Y17D7B.1   1.12e-18   361-485   Nuclear receptor ligand-binding domain  
  7.29e-18   146-319   Nuclear receptor ligand-binding domain  
Y22F5A.1   5.55e-31   175-388   Nuclear receptor ligand-binding domain  
Y38E10A.18   1.36e-21   171-355   Nuclear receptor ligand-binding domain  
Y38E10A.19   4.13e-18   8-211   Nuclear receptor ligand-binding domain  
Y38F2AL.B   0.00000000484   47-192   Nuclear receptor ligand-binding domain  
Y39B6A.17A   2.77e-34   152-369   Nuclear receptor ligand-binding domain  
Y46H3D.6   5.73e-27   91-328   Nuclear receptor ligand-binding domain  
Y51A2D.17   1.48e-45   77-103,131-386   Nuclear receptor ligand-binding domain  
Y5H2B.2   4.98e-36   179-410   Nuclear receptor ligand-binding domain  
Y67A6A.2   3.41e-34   264-505   Nuclear receptor ligand-binding domain  
Y67D8B.B   8.99e-27   82-315   Nuclear receptor ligand-binding domain  
Y77E11A.5   2.7e-22   213-380,412-456   Nuclear receptor ligand-binding domain  
Y80D3A.4   1.24e-34   230-461   Nuclear receptor ligand-binding domain  
Y94H6A.J   7.34e-27   232-465   Nuclear receptor ligand-binding domain  
ZC410.1   2.62e-39   192-458   Nuclear receptor ligand-binding domain  
ZK1025.10   0.00000000000000115   128-324   Nuclear receptor ligand-binding domain  
ZK1025.6   8.22e-17   12-170   Nuclear receptor ligand-binding domain  
ZK1025.9   3.37e-21   2-174   Nuclear receptor ligand-binding domain  
ZK381.3   0.000000000272   3-111   Nuclear receptor ligand-binding domain  
ZK418.1   1.28e-45   100-331   Nuclear receptor ligand-binding domain  
ZK488.2   9.65e-39   162-385   Nuclear receptor ligand-binding domain  
ZK488.4   2.82e-16   162-340   Nuclear receptor ligand-binding domain  
ZK6.4   5.24e-50   97-340   Nuclear receptor ligand-binding domain  
ZK697.2   7.47e-22   180-428   Nuclear receptor ligand-binding domain  
 
Weak hits:
281972   0.0608   6-66   Nuclear receptor ligand-binding domain  
357445   0.0464   29-75   Nuclear receptor ligand-binding domain  
374243   0.0646   23-73   Nuclear receptor ligand-binding domain  
393165   0.0457   246-281   Nuclear receptor ligand-binding domain  
4116   0.0178   1049-1122   Nuclear receptor ligand-binding domain  
419262   0.0178   250-275   Nuclear receptor ligand-binding domain  
419378   0.0723   249-274   Nuclear receptor ligand-binding domain  
C32F10.6   0.00184   162-353   Nuclear receptor ligand-binding domain  
ChR73   0.0596   86-172   Nuclear receptor ligand-binding domain  
K02B12.2   0.0663   20-79   Nuclear receptor ligand-binding domain  
Lmaj00846AAB   0.0268   18-59   Nuclear receptor ligand-binding domain  
NYSGRC-CAA58351   0.0169   194-293   Nuclear receptor ligand-binding domain  

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Select to display   Genome       Domains   Proteins
No Yes ALL   90798 90798
No Yes Homo sapiens 76_38 Human 249 248
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 52 52
No Yes Gorilla gorilla 76_3.1 Western gorilla 72 72
No Yes Pongo abelii 76_2 Sumatran orangutan 51 51
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 57 57
No Yes Papio anubis 76 Olive baboon 52 52
No Yes Macaca mulatta 76_1 Rhesus monkey 103 102
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 137 137
No Yes Otolemur garnettii 76_3 Small-eared galago 51 51
No Yes Microcebus murinus 76_1 Gray mouse lemur 49 43
No Yes Rattus norvegicus 76_5.0 Norway rat 59 59
No Yes Mus musculus 76_38 House mouse 132 132
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 45 43
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 48 48
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 62 59
No Yes Cavia porcellus 76_3 Domestic guinea pig 55 54
No Yes Oryctolagus cuniculus 76_2 Rabbit 49 49
No Yes Ochotona princeps 76 American pika 48 43
No Yes Tupaia belangeri 76 Northern tree shrew 50 42
No Yes Sus scrofa 76_10.2 Pig 62 62
No Yes Bos taurus 76_3.1 Cattle 54 54
No Yes Ovis aries 76_3.1 Sheep 51 51
No Yes Vicugna pacos 76_1 Alpaca 32 30
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 49 48
No Yes Mustela putorius furo 76_1.0 Domestic ferret 50 50
No Yes Ailuropoda melanoleuca 76_1 Giant panda 55 55
No Yes Canis familiaris 76_3.1 Dog 56 56
No Yes Felis catus 76_6.2 Domestic cat 54 54
No Yes Equus caballus 76_2 Horse 53 53
No Yes Myotis lucifugus 76_2.0 Little brown bat 49 49
No Yes Pteropus vampyrus 76_1 Large flying fox 50 49
No Yes Sorex araneus 76_1 European shrew 36 32
No Yes Erinaceus europaeus 76 Western European hedgehog 51 40
No Yes Procavia capensis 76_1 Cape rock hyrax 44 44
No Yes Loxodonta africana 76_3 African savanna elephant 66 66
No Yes Echinops telfairi 76 Small Madagascar hedgehog 47 44
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 60 60
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 40 37
No Yes Macropus eugenii 76_1.0 Tammar wallaby 52 48
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 60 60
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 48 48
No Yes Ornithorhynchus anatinus 76_5 Platypus 46 46
No Yes Saccoglossus kowalevskii v3.0   77 77
No Yes Petromyzon marinus 76_7.0 Sea lamprey 32 32
No Yes Meleagris gallopavo 76_2 Turkey 49 49
No Yes Gallus gallus 76_4 Chicken 49 49
No Yes Anas platyrhynchos 76_1.0 Mallard 52 52
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 52 52
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 48 48
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 58 58
No Yes Anolis carolinensis 76_2.0 Green anole 52 52
No Yes Xenopus laevis African clawed frog 170 170
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 58 58
No Yes Latimeria chalumnae 76_1 Coelacanth 65 65
No Yes Lepisosteus oculatus 76 Spotted gar 64 64
No Yes Gadus morhua 76_1 Atlantic cod 77 75
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 83 83
No Yes Takifugu rubripes 76_4 Torafugu 246 246
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 89 89
No Yes Oryzias latipes 76_1 Japanese medaka 80 80
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 73 73
No Yes Poecilia formosa 76 Amazon molly 74 73
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 94 94
No Yes Astyanax mexicanus 76 Mexican tetra 75 74
No Yes Danio rerio 76_9 Zebrafish 130 130
No Yes Oikopleura dioica   37 37
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 27 27
No Yes Ciona intestinalis 76 Vase tunicate 23 23
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 42 41
No Yes Adineta vaga   139 138
No Yes Octopus bimaculoides 280   38 38
No Yes Crassostrea gigas 22 Pacific oyster 43 42
No Yes Lottia gigantea Owl limpet 31 31
No Yes Helobdella robusta   35 35
No Yes Capitella sp. I   41 40
No Yes Danaus plexippus OGS1.0 Monarch butterfly 20 20
No Yes Heliconius melpomene Postman butterfly 18 18
No Yes Bombyx mori Domestic silkworm 24 23
No Yes Nasonia vitripennis Jewel wasp 15 15
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 63 63
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 19 19
No Yes Linepithema humile v1.1 Argentine ant 21 21
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 20 20
No Yes Solenopsis invicta v.2.2.3 Red fire ant 20 20
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 20 20
No Yes Atta cephalotes v1.1   20 20
No Yes Camponotus floridanus v3.3 Florida carpenter ant 20 20
No Yes Lucilia cuprina Australian sheep blowfly 18 18
No Yes Drosophila grimshawi 1.3   19 19
No Yes Drosophila willistoni 1.3   18 18
No Yes Drosophila pseudoobscura 2.13   19 19
No Yes Drosophila persimilis 1.3   20 20
No Yes Drosophila suzukii   23 20
No Yes Drosophila yakuba 1.3   18 18
No Yes Drosophila simulans 1.3   16 16
No Yes Drosophila sechellia 1.3   17 17
No Yes Drosophila melanogaster 76_5 Fruit fly 66 66
No Yes Drosophila erecta 1.3   18 18
No Yes Drosophila ananassae 1.3   19 19
No Yes Drosophila virilis 1.2   18 18
No Yes Drosophila mojavensis 1.3   18 18
No Yes Megaselia scalaris 22   11 11
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 22 22
No Yes Culex pipiens quinquefasciatus Southern house mosquito 23 23
No Yes Anopheles darlingi 22 American malaria mosquito 15 15
No Yes Anopheles gambiae 49_3j African malaria mosquito 24 24
No Yes Tribolium castaneum 3.0 Red flour beetle 25 25
No Yes Pediculus humanus corporis (Early assembly) Human body louse 18 18
No Yes Acyrthosiphon pisum Pea aphid 15 15
No Yes Rhodnius prolixus 22   20 20
No Yes Daphnia pulex Common water flea 23 23
No Yes Strigamia maritima 22   24 24
No Yes Sarcoptes scabiei   17 17
No Yes Tetranychus urticae Two-spotted spider mite 46 46
No Yes Ixodes scapularis (Preliminary) Black-legged tick 20 20
No Yes Pristionchus pacificus   185 182
No Yes Meloidogyne incognita Southern root-knot nematode 116 113
No Yes Meloidogyne hapla   52 52
No Yes Onchocerca volvulus 22   27 27
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 60 60
No Yes Caenorhabditis japonica   115 113
No Yes Caenorhabditis brenneri   293 275
No Yes Caenorhabditis remanei   319 312
No Yes Caenorhabditis elegans 76_235 Roundworm 438 438
No Yes Caenorhabditis briggsae 2   261 253
No Yes Trichinella spiralis 22   18 17
No Yes Hymenolepis microstoma   13 12
No Yes Echinococcus multilocularis   16 16
No Yes Echinococcus granulosus   16 16
No Yes Taenia solium Pork tapeworm 14 14
No Yes Schistosoma mansoni   22 21
No Yes Mnemiopsis leidyi Sea walnut 3 3
No Yes Acropora digitifera v1.0   9 9
No Yes Nematostella vectensis 1.0 Starlet sea anemone 20 20
No Yes Hydra vulgaris   8 8
No Yes Amphimedon queenslandica   4 4
No Yes Trichoplax adhaerens   5 5
No Yes Tulasnella calospora AL13/4D v1.0   1 1
No Yes Theobroma cacao B97-61/B2 v1 Cacao 1 1
No Yes Glycine max v109 Soybean 1 1
No Yes Cucumis sativus v122 Cucumber 1 1
No Yes Mimulus guttatus v140 Spotted monkey flower 1 1
No Yes Aquilegia coerulea v195   1 1
No Yes Triticum aestivum 22 Bread wheat 2 2
No Yes Brachypodium distachyon Stiff brome 1 1
No Yes Oryza barthii 22 African wild rice 1 1
No Yes Oryza meridionalis 22   2 2
No Yes Oryza glumaepatula 22   2 2
No Yes Oryza glaberrima African rice 1 1
No Yes Oryza punctata 22   2 2
No Yes Oryza nivara 22   1 1
No Yes Oryza brachyantha 22 Malo sina 2 2
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 1 1
No Yes Oryza sativa v193 Rice 1 1
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 1 1
No Yes Panicum virgatum v202 Switchgrass 1 1
No Yes Zea mays subsp. mays Maize 1 1
No Yes Zea mays v181 Maize 1 1
No Yes Musa balbisiana Balbis banana 1 1
No Yes Musa acuminata 22 Wild Malaysian banana 1 1
No Yes Guillardia theta CCMP2712 v1.0   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 96 96
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 48 48
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 28 28
No Yes Ascaris suum Victoria/Ghent Pig roundworm 51 50
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 351 351
No Yes Hordeum vulgare 22 Domesticated barley 3 3
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 263 262
No Yes Homo sapiens (NCBI version) Human 139 139
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 49 49
No Yes Heliconius numata (Incomplete)   3 3
No Yes Loa loa v3.3 (Request) Eye worm 30 30
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 31 31
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 28 28
No Yes Lotus japonicus (Early assembly)   1 1
No Yes Homo sapiens 69_37 Human 54 53
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 46 46
No Yes Gorilla gorilla 69_3.1 Western gorilla 50 50
No Yes Pongo abelii 69_2 Sumatran orangutan 48 48
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 46 46
No Yes Macaca mulatta 69_1 Rhesus monkey 49 48
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 48 48
No Yes Otolemur garnettii 69_3 Small-eared galago 49 49
No Yes Microcebus murinus 69_1 Gray mouse lemur 49 43
No Yes Rattus norvegicus 69_3.4 Norway rat 45 45
No Yes Mus musculus 69_38 House mouse 49 49
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 44 42
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 48 48
No Yes Cavia porcellus 69_3 Domestic guinea pig 50 49
No Yes Oryctolagus cuniculus 69_2 Rabbit 45 45
No Yes Ochotona princeps 69 American pika 48 43
No Yes Tupaia belangeri 69 Northern tree shrew 50 42
No Yes Sus scrofa 69_10.2 Pig 50 50
No Yes Bos taurus 69_3.1 Cattle 48 48
No Yes Vicugna pacos 69_1 Alpaca 31 29
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 48 47
No Yes Mustela putorius furo 69_1.0 Domestic ferret 50 50
No Yes Ailuropoda melanoleuca 69_1 Giant panda 50 50
No Yes Canis familiaris 69_3.1 Dog 47 47
No Yes Felis catus 69 Domestic cat 46 42
No Yes Equus caballus 69_2 Horse 48 48
No Yes Myotis lucifugus 69_2.0 Little brown bat 48 48
No Yes Pteropus vampyrus 69_1 Large flying fox 49 48
No Yes Sorex araneus 69_1 European shrew 36 32
No Yes Erinaceus europaeus 69 Western European hedgehog 51 40
No Yes Procavia capensis 69_1 Cape rock hyrax 43 43
No Yes Loxodonta africana 69_3 African savanna elephant 50 50
No Yes Echinops telfairi 69 Small Madagascar hedgehog 47 44
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 41 37
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 39 36
No Yes Macropus eugenii 69_1.0 Tammar wallaby 51 47
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 49 49
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 46 46
No Yes Ornithorhynchus anatinus 69_5 Platypus 43 43
No Yes Petromyzon marinus 69_7.0 Sea lamprey 30 30
No Yes Meleagris gallopavo 69_2 Turkey 39 39
No Yes Gallus gallus 69_2 Chicken 41 41
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 52 52
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 49 49
No Yes Anolis carolinensis 69_2.0 Green anole 49 49
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 52 52
No Yes Latimeria chalumnae 69_1 Coelacanth 54 54
No Yes Gadus morhua 69_1 Atlantic cod 73 71
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 71 71
No Yes Takifugu rubripes 69_4 Torafugu 74 74
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 69 69
No Yes Oryzias latipes 69_1 Japanese medaka 66 66
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 73 73
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 74 74
No Yes Danio rerio 69_9 Zebrafish 76 76
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 16 16
No Yes Ciona intestinalis 69 Vase tunicate 19 19
No Yes Drosophila melanogaster 69_5 Fruit fly 18 18
No Yes Caenorhabditis elegans 69_215 Roundworm 279 279
No Yes Endophytic microbiome from Rice (meta-genome)   1 1
No Yes NCBI 2017_08 genome   36298 36211
No Yes STRING v9.0.5 (STRING)   2974 2924
No Yes Uniprot 2018_03 genome   25823 25490
No Yes Global Ocean Sampling Expedition (GOS)   1 1
No Yes PDB chains (SCOP 1.75) (PDB)   148 148
No Yes Protein Data Bank (all PDB sequenc)   2195 2195
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   4711 4711
No Yes TargetDB (Targets)   240 239
No Yes UniProt viral sequences (Viral)   4 4

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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