SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.


EGF/Laminin superfamily domain assignments
in
Proterospongia sp. ATCC 50818

Assignment details

(show help)


Proterospongia sp. ATCC 50818 has 129 significant domains in 59 proteins.

     

Sequence ID   Evalue   Region   Family  
PTSG_00098T0   0.00001   954-993   EGF-type module  
PTSG_00501T0   0.00000344   852-883   EGF-type module  
  0.0000109   930-982   Laminin-type module  
  0.0000243   1880-1937   EGF-type module  
  0.00363   980-1022   Laminin-type module  
  0.00446   1971-2017   Laminin-type module  
  0.00753   2021-2069   Laminin-type module  
PTSG_00638T0   0.00000000028   260-301   EGF-type module  
  0.0000000419   413-454   EGF-type module  
  0.0000000455   105-141   EGF-type module  
  0.000000419   578-620   EGF-type module  
  0.024   552-582   EGF-type module  
  0.0991   390-422   EGF-type module  
PTSG_00729T0   0.0000000875   454-510   EGF-type module  
  0.00000148   704-743   EGF-type module  
  0.00000331   620-673   EGF-like domain of nidogen-1  
  0.00000409   664-700   EGF-like domain of nidogen-1  
  0.0000678   742-794   EGF-type module  
  0.0681   786-813   EGF-type module  
PTSG_00950T0   0.000000306   66-108   EGF-type module  
PTSG_00996T0   0.00000000907   1571-1606   EGF-type module  
  0.0000000344   857-908   EGF-type module  
  0.0000000607   1256-1305   EGF-type module  
PTSG_00997T0   0.00000000295   2-55   EGF-type module  
PTSG_00999T0   0.0000000607   1244-1293   EGF-type module  
PTSG_01465T0   0.000000000331   1311-1350   EGF-type module  
  0.000000187   1661-1702   EGF-type module  
PTSG_01501T0   0.000000188   99-131   EGF-type module  
PTSG_01943T0   0.000000171   5988-6027   EGF-type module  
PTSG_01986T0   0.00000276   1095-1139   EGF-type module  
  0.0000936   1055-1095   EGF-type module  
PTSG_02226T0   0.00000809   559-603   Laminin-type module  
  0.0000204   501-547   Laminin-type module  
  0.0000307   720-772   Laminin-type module  
  0.00229   683-722   Laminin-type module  
PTSG_02568T0   0.0000000000794   917-959   EGF-type module  
  0.000000000227   496-535   EGF-type module  
  0.000000000249   241-280   EGF-type module  
  0.000000000249   390-429   EGF-type module  
  0.000000000249   867-906   EGF-type module  
  0.000000000249   1132-1171   EGF-type module  
  0.000000000321   190-227   EGF-type module  
  0.000000000499   337-376   EGF-type module  
  0.000000000522   443-482   EGF-type module  
  0.000000000522   549-588   EGF-type module  
  0.000000000522   602-641   EGF-type module  
  0.000000000522   655-694   EGF-type module  
  0.000000000522   708-747   EGF-type module  
  0.000000000522   761-800   EGF-type module  
  0.000000000522   814-853   EGF-type module  
  0.000000000522   973-1012   EGF-type module  
  0.000000000522   1026-1065   EGF-type module  
  0.000000000522   1079-1118   EGF-type module  
  0.000000000522   1185-1224   EGF-type module  
  0.0000000498   1246-1284   EGF-type module  
PTSG_03003T0   0.00000000706   590-645   EGF-type module  
  0.000000177   997-1040   EGF-type module  
PTSG_03009T0   0.0000256   254-300   EGF-type module  
PTSG_03128T0   0.000000285   653-692   EGF-type module  
PTSG_03209T0   0.0000000288   1600-1643   EGF-type module  
  0.000000144   1859-1906   EGF-type module  
  0.00000139   1816-1861   EGF-type module  
PTSG_03311T0   0.00000000141   492-535   EGF-type module  
PTSG_03475T0   0.000000592   96-135   EGF-type module  
PTSG_03655T0   0.00000142   224-262   EGF-type module  
  0.00000251   569-622   EGF-type module  
  0.00000402   298-335   EGF-type module  
  0.000015   268-304   EGF-type module  
  0.00305   191-233   EGF-type module  
PTSG_04146T0   0.0000000363   209-257   Laminin-type module  
  0.0000000558   96-158   Laminin-type module  
  0.000000112   156-200   Laminin-type module  
  0.00000594   260-306   Laminin-type module  
PTSG_04159T0   0.0000262   424-481   EGF-type module  
  0.0000785   468-526   EGF-type module  
  0.000115   559-610   EGF-type module  
  0.00135   331-392   EGF-type module  
  0.00726   241-293   EGF-type module  
  0.0126   149-202   EGF-type module  
  0.0967   207-255   EGF-type module  
PTSG_04724T0   0.0000419   731-774   EGF-type module  
PTSG_05153T0   0.00000012   388-436   Laminin-type module  
  0.0000204   439-486   Laminin-type module  
  0.0000279   275-333   Laminin-type module  
  0.00558   331-380   Laminin-type module  
PTSG_05252T0   0.00000265   41-79   EGF-type module  
PTSG_05617T0   0.0000000479   890-930   EGF-type module  
  0.000000304   845-880   EGF-type module  
PTSG_05678T0   0.0000012   224-282   EGF-type module  
  0.00000598   133-194   EGF-type module  
  0.000179   269-326   EGF-type module  
  0.00957   313-369   EGF-type module  
  0.0592   193-234   EGF-type module  
PTSG_06031T0   0.0000055   474-498   EGF-type module  
PTSG_06159T0   0.0000000327   370-409   EGF-type module  
  0.0000000839   257-299   EGF-type module  
  0.0000185   411-449   EGF-type module  
  0.000295   183-221   EGF-type module  
  0.00117   447-489   EGF-type module  
  0.00788   51-100   EGF-type module  
PTSG_06299T0   0.0000307   679-719   EGF-type module  
PTSG_06368T0   0.000000978   270-308   EGF-type module  
PTSG_06479T0   0.000000000128   293-333   EGF-type module  
  0.0000174   119-158   EGF-type module  
PTSG_06597T0   0.00000299   248-290   EGF-type module  
PTSG_06613T0   0.00000196   757-800   EGF-type module  
PTSG_06655T0   0.000000012   3281-3319   EGF-type module  
  0.000000457   3245-3287   EGF-type module  
PTSG_06729T0   0.0000000191   2335-2378   EGF-type module  
PTSG_06730T0   0.00000000294   613-653   EGF-type module  
  0.000000607   4918-4959   EGF-type module  
PTSG_07019T0   0.00000129   277-316   EGF-type module  
PTSG_07192T0   0.00000307   237-283   EGF-type module  
PTSG_07265T0   0.00000367   151-190   EGF-type module  
PTSG_07442T0   0.00000419   247-293   EGF-type module  
PTSG_07496T0   0.00000838   243-281   EGF-type module  
PTSG_07540T0   0.0000132   282-339   EGF-type module  
  0.0000168   371-430   EGF-type module  
  0.0000659   193-251   EGF-type module  
  0.000126   416-470   EGF-type module  
  0.0293   332-365   EGF-type module  
  0.0479   153-207   EGF-type module  
PTSG_07770T0   0.0000000229   3809-3847   EGF-type module  
  0.000000264   3771-3815   EGF-type module  
  0.00000469   3727-3769   EGF-type module  
PTSG_07827T0   0.00000141   1550-1587   EGF-type module  
  0.021   501-525   EGF-type module  
PTSG_08181T0   0.00000963   2759-2807   Laminin-type module  
  0.000067   3890-3937   Laminin-type module  
  0.00146   3941-3989   Laminin-type module  
  0.0105   2807-2851   Laminin-type module  
  0.0117   1533-1572   EGF-type module  
PTSG_08390T0   0.0000000000185   4163-4203   EGF-type module  
  0.000000000538   1324-1365   EGF-type module  
  0.00000000197   4009-4051   EGF-type module  
  0.00000000344   3976-4017   EGF-type module  
  0.00000138   1917-1949   EGF-type module  
  0.0000033   1857-1897   EGF-type module  
  0.0000153   105-143   EGF-type module  
  0.000184   4203-4240   EGF-type module  
  0.000648   146-181   EGF-type module  
  0.000686   27-56   EGF-type module  
  0.000809   75-109   EGF-type module  
  0.00181   1292-1328   EGF-type module  
PTSG_08402T0   0.000000921   56-103   EGF-type module  
PTSG_08713T0   0.00000133   332-389   EGF-type module  
  0.00000576   421-481   EGF-type module  
  0.0000329   243-301   EGF-type module  
  0.000126   466-520   EGF-type module  
  0.00397   379-412   EGF-type module  
PTSG_09037T0   0.00000662   481-508   Integrin beta EGF-like domains  
PTSG_09047T0   0.000000000366   721-761   EGF-type module  
  0.0000273   254-293   EGF-type module  
PTSG_09549T0   0.00000203   248-294   EGF-type module  
PTSG_09971T0   0.00000134   714-762   Laminin-type module  
  0.0000273   765-817   Laminin-type module  
  0.0000642   593-650   EGF-type module  
  0.0000698   648-698   Laminin-type module  
PTSG_10108T0   0.00000171   46-84   EGF-type module  
  0.0347   2082-2111   EGF-type module  
PTSG_10215T0   0.000000018   298-345   EGF-type module  
PTSG_10665T0   0.00000108   306-346   EGF-type module  
PTSG_11057T0   0.00000489   247-293   EGF-type module  
PTSG_11194T0   0.00000218   254-298   EGF-type module  
 
Weak hits:
PTSG_00614T0   0.000171   469-502   EGF-type module  
PTSG_00871T0   0.00753   910-948   EGF-type module  
PTSG_01083T0   0.0109   1634-1659   Integrin beta EGF-like domains  
  0.0678   1518-1544   Integrin beta EGF-like domains  
PTSG_01378T0   0.00474   2804-2843   EGF-type module  
PTSG_03046T0   0.000352   1061-1117   EGF-type module  
  0.00368   1016-1070   EGF-type module  
  0.00703   798-832   Merozoite surface protein 1 (MSP-1)  
  0.0201   671-714   EGF-type module  
  0.0276   978-1008   EGF-type module  
PTSG_03468T0   0.1   164-207   EGF-type module  
PTSG_03605T0   0.000605   105-156   EGF-type module  
  0.00152   150-192   EGF-type module  
PTSG_04246T0   0.006   916-953   EGF-type module  
PTSG_04263T0   0.00285   849-886   EGF-type module  
PTSG_04373T0   0.00698   116-151   EGF-type module  
PTSG_04390T0   0.01   476-501   EGF-type module  
PTSG_04485T0   0.0921   506-539   Merozoite surface protein 1 (MSP-1)  
PTSG_04891T0   0.000255   156-221   EGF-type module  
  0.0251   295-343   EGF-type module  
PTSG_05163T0   0.0838   48-73   Integrin beta EGF-like domains  
PTSG_05294T0   0.000419   110-154   EGF-type module  
PTSG_05882T0   0.00837   522-546   Integrin beta EGF-like domains  
PTSG_06572T0   0.000274   361-407   EGF-type module  
  0.00149   272-328   EGF-type module  
  0.00293   315-371   EGF-type module  
  0.00393   182-234   EGF-type module  
  0.00614   90-143   EGF-type module  
  0.0323   148-196   EGF-type module  
PTSG_07263T0   0.00614   1158-1199   EGF-type module  
  0.0243   1206-1242   EGF-type module  
PTSG_07501T0   0.000251   165-193   EGF-type module  
  0.0805   204-221   EGF-type module  
PTSG_07926T0   0.00034   435-467   EGF-type module  
PTSG_07959T0   0.027   18-49   EGF-type module  
PTSG_08822T0   0.0126   478-507   EGF-type module  
PTSG_09339T0   0.000948   957-985   Integrin beta EGF-like domains  
  0.0234   417-450   EGF-type module  
PTSG_09992T0   0.00193   140-177   EGF-type module  

Jump to [ Top of page · Assignment details · Add assignments from individual genomes ]


Add assignments from groups of genomes

View all assignments containing a EGF/Laminin domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]


Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   719145 719145
No Yes Homo sapiens 76_38 Human 1736 621
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 532 163
No Yes Gorilla gorilla 76_3.1 Western gorilla 876 233
No Yes Pongo abelii 76_2 Sumatran orangutan 539 174
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 555 171
No Yes Papio anubis 76 Olive baboon 634 191
No Yes Macaca mulatta 76_1 Rhesus monkey 925 318
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 1183 386
No Yes Otolemur garnettii 76_3 Small-eared galago 551 171
No Yes Microcebus murinus 76_1 Gray mouse lemur 455 139
No Yes Rattus norvegicus 76_5.0 Norway rat 613 207
No Yes Mus musculus 76_38 House mouse 1015 344
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 515 145
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 529 164
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 521 161
No Yes Cavia porcellus 76_3 Domestic guinea pig 580 173
No Yes Oryctolagus cuniculus 76_2 Rabbit 478 160
No Yes Ochotona princeps 76 American pika 469 142
No Yes Tupaia belangeri 76 Northern tree shrew 407 132
No Yes Sus scrofa 76_10.2 Pig 585 211
No Yes Bos taurus 76_3.1 Cattle 632 189
No Yes Ovis aries 76_3.1 Sheep 602 193
No Yes Vicugna pacos 76_1 Alpaca 260 102
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 526 156
No Yes Mustela putorius furo 76_1.0 Domestic ferret 583 186
No Yes Ailuropoda melanoleuca 76_1 Giant panda 634 192
No Yes Canis familiaris 76_3.1 Dog 761 226
No Yes Felis catus 76_6.2 Domestic cat 592 185
No Yes Equus caballus 76_2 Horse 806 230
No Yes Myotis lucifugus 76_2.0 Little brown bat 502 169
No Yes Pteropus vampyrus 76_1 Large flying fox 529 164
No Yes Sorex araneus 76_1 European shrew 286 102
No Yes Erinaceus europaeus 76 Western European hedgehog 383 118
No Yes Procavia capensis 76_1 Cape rock hyrax 460 149
No Yes Loxodonta africana 76_3 African savanna elephant 690 216
No Yes Echinops telfairi 76 Small Madagascar hedgehog 391 135
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 616 199
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 271 99
No Yes Macropus eugenii 76_1.0 Tammar wallaby 454 139
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 621 199
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 616 176
No Yes Ornithorhynchus anatinus 76_5 Platypus 511 184
No Yes Saccoglossus kowalevskii v3.0   3261 466
No Yes Petromyzon marinus 76_7.0 Sea lamprey 221 94
No Yes Meleagris gallopavo 76_2 Turkey 509 175
No Yes Gallus gallus 76_4 Chicken 523 155
No Yes Anas platyrhynchos 76_1.0 Mallard 519 172
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 513 170
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 533 157
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 592 196
No Yes Anolis carolinensis 76_2.0 Green anole 539 160
No Yes Xenopus laevis African clawed frog 514 207
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 694 186
No Yes Latimeria chalumnae 76_1 Coelacanth 738 218
No Yes Lepisosteus oculatus 76 Spotted gar 888 241
No Yes Gadus morhua 76_1 Atlantic cod 618 198
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 995 299
No Yes Takifugu rubripes 76_4 Torafugu 2323 723
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 771 242
No Yes Oryzias latipes 76_1 Japanese medaka 740 228
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 627 196
No Yes Poecilia formosa 76 Amazon molly 687 203
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 1051 282
No Yes Astyanax mexicanus 76 Mexican tetra 752 239
No Yes Danio rerio 76_9 Zebrafish 1139 389
No Yes Oikopleura dioica   459 149
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 1671 332
No Yes Ciona intestinalis 76 Vase tunicate 438 155
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 2661 612
No Yes Adineta vaga   1146 278
No Yes Octopus bimaculoides 280   748 217
No Yes Crassostrea gigas 22 Pacific oyster 874 287
No Yes Lottia gigantea Owl limpet 627 164
No Yes Helobdella robusta   407 130
No Yes Capitella sp. I   916 309
No Yes Danaus plexippus OGS1.0 Monarch butterfly 197 52
No Yes Heliconius melpomene Postman butterfly 184 46
No Yes Bombyx mori Domestic silkworm 149 65
No Yes Nasonia vitripennis Jewel wasp 168 39
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 745 159
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 213 49
No Yes Linepithema humile v1.1 Argentine ant 160 66
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 182 59
No Yes Solenopsis invicta v.2.2.3 Red fire ant 111 54
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 220 46
No Yes Atta cephalotes v1.1   189 65
No Yes Camponotus floridanus v3.3 Florida carpenter ant 206 46
No Yes Lucilia cuprina Australian sheep blowfly 189 47
No Yes Drosophila grimshawi 1.3   235 55
No Yes Drosophila willistoni 1.3   203 47
No Yes Drosophila pseudoobscura 2.13   219 52
No Yes Drosophila persimilis 1.3   189 52
No Yes Drosophila suzukii   233 53
No Yes Drosophila yakuba 1.3   214 47
No Yes Drosophila simulans 1.3   145 43
No Yes Drosophila sechellia 1.3   187 41
No Yes Drosophila melanogaster 76_5 Fruit fly 696 152
No Yes Drosophila erecta 1.3   215 44
No Yes Drosophila ananassae 1.3   210 48
No Yes Drosophila virilis 1.2   216 49
No Yes Drosophila mojavensis 1.3   212 46
No Yes Megaselia scalaris 22   77 32
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 222 54
No Yes Culex pipiens quinquefasciatus Southern house mosquito 204 55
No Yes Anopheles darlingi 22 American malaria mosquito 125 29
No Yes Anopheles gambiae 49_3j African malaria mosquito 196 51
No Yes Tribolium castaneum 3.0 Red flour beetle 229 58
No Yes Pediculus humanus corporis (Early assembly) Human body louse 220 55
No Yes Acyrthosiphon pisum Pea aphid 185 35
No Yes Rhodnius prolixus 22   183 44
No Yes Daphnia pulex Common water flea 256 74
No Yes Strigamia maritima 22   230 60
No Yes Sarcoptes scabiei   166 48
No Yes Tetranychus urticae Two-spotted spider mite 224 64
No Yes Ixodes scapularis (Preliminary) Black-legged tick 156 55
No Yes Pristionchus pacificus   229 96
No Yes Meloidogyne incognita Southern root-knot nematode 119 42
No Yes Meloidogyne hapla   76 37
No Yes Onchocerca volvulus 22   185 53
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 433 107
No Yes Caenorhabditis japonica   193 64
No Yes Caenorhabditis brenneri   302 105
No Yes Caenorhabditis remanei   276 100
No Yes Caenorhabditis elegans 76_235 Roundworm 528 152
No Yes Caenorhabditis briggsae 2   242 82
No Yes Trichinella spiralis 22   313 92
No Yes Hymenolepis microstoma   122 36
No Yes Echinococcus multilocularis   133 38
No Yes Echinococcus granulosus   126 38
No Yes Taenia solium Pork tapeworm 127 41
No Yes Schistosoma mansoni   123 45
No Yes Mnemiopsis leidyi Sea walnut 178 50
No Yes Thelohanellus kitauei   26 25
No Yes Acropora digitifera v1.0   831 347
No Yes Nematostella vectensis 1.0 Starlet sea anemone 1039 372
No Yes Hydra vulgaris   350 115
No Yes Amphimedon queenslandica   433 151
No Yes Trichoplax adhaerens   574 125
No Yes Proterospongia sp. ATCC 50818   129 59
No Yes Monosiga brevicollis   53 30
No Yes Sphaeroforma arctica JP610   120 34
No Yes Capsaspora owczarzaki ATCC 30864   28 22
No Yes Amorphotheca resinae v1.0 Creosote fungus 1 1
No Yes Didymella exigua CBS 183.55 v1.0   1 1
No Yes Trichophyton verrucosum HKI 0517   1 1
No Yes Arthroderma benhamiae CBS 112371   1 1
No Yes Trichophyton tonsurans CBS 112818   1 1
No Yes Trichophyton rubrum CBS 118892   1 1
No Yes Penicillium chrysogenum Wisconsin 54-1255   1 1
No Yes Penicillium chrysogenum v1.0   1 1
No Yes Aspergillus terreus NIH2624   1 1
No Yes Aspergillus flavus NRRL3357   1 1
No Yes Yarrowia lipolytica CLIB122   1 1
No Yes Spizellomyces punctatus DAOM BR117   1 1
No Yes Dictyostelium discoideum   19 9
No Yes Dictyostelium purpureum   9 6
No Yes Pinus taeda Loblolly pine 1 1
No Yes Picea abies Norway spruce 1 1
No Yes Eucalyptus grandis v201 Rose gum 17 17
No Yes Theobroma cacao B97-61/B2 v1 Cacao 6 6
No Yes Gossypium raimondii v221   17 17
No Yes Citrus clementina v165   4 4
No Yes Citrus sinensis v154 Sweet orange 10 10
No Yes Thellungiella halophila v173   3 3
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 11 11
No Yes Capsella rubella v183   6 6
No Yes Arabidopsis lyrata Lyrate rockcress 4 4
No Yes Arabidopsis thaliana 10 Thale cress 5 5
No Yes Carica papaya Papaya 4 4
No Yes Medicago truncatula Barrel medic 18 18
No Yes Phaseolus vulgaris v186 French bean 8 8
No Yes Glycine max v109 Soybean 12 12
No Yes Cucumis sativus v122 Cucumber 6 5
No Yes Fragaria vesca Wild strawberry 15 13
No Yes Malus domestica v196 Apple 25 25
No Yes Prunus persica v139 Peach 11 11
No Yes Linum usitatissimum v200 Flax 1 1
No Yes Populus trichocarpa v156 Black cottonwood 10 10
No Yes Vitis vinifera Wine grape 19 12
No Yes Mimulus guttatus v140 Spotted monkey flower 2 2
No Yes Solanum lycopersicum v.2.3 Tomato 6 6
No Yes Solanum tuberosum Potato 20 20
No Yes Actinidia chinensis Hongyang   5 5
No Yes Aquilegia coerulea v195   14 14
No Yes Triticum urartu 22   42 42
No Yes Triticum aestivum 22 Bread wheat 122 122
No Yes Aegilops tauschii 22   64 64
No Yes Brachypodium distachyon Stiff brome 26 25
No Yes Oryza barthii 22 African wild rice 59 49
No Yes Oryza meridionalis 22   53 44
No Yes Oryza glumaepatula 22   66 64
No Yes Oryza glaberrima African rice 31 31
No Yes Oryza punctata 22   44 41
No Yes Oryza nivara 22   56 52
No Yes Oryza brachyantha 22 Malo sina 38 38
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 50 49
No Yes Oryza sativa v193 Rice 51 50
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 16 16
No Yes Panicum virgatum v202 Switchgrass 77 76
No Yes Setaria italica v164 Foxtail millet 40 40
No Yes Zea mays subsp. mays Maize 18 17
No Yes Zea mays v181 Maize 20 19
No Yes Sorghum bicolor Sorghum 26 26
No Yes Musa balbisiana Balbis banana 14 13
No Yes Musa acuminata 22 Wild Malaysian banana 29 26
No Yes Amborella trichopoda 22   4 4
No Yes Physcomitrella patens   2 2
No Yes Coccomyxa subellipsoidea sp. C-169 v2   4 4
No Yes Asterochloris sp. Cgr/DA1pho v1.0   2 2
No Yes Chlorella variabilis sp. NC64A   7 6
No Yes Chlorella vulgaris   5 5
No Yes Volvox carteri f. nagariensis   2 2
No Yes Volvox carteri v199   1 1
No Yes Chlamydomonas reinhardtii 4.0   5 5
No Yes Ostreococcus lucimarinus CCE9901   4 4
No Yes Ostreococcus tauri   2 2
No Yes Bathycoccus prasinos   4 4
No Yes Micromonas sp. RCC299   3 2
No Yes Micromonas pusilla CCMP1545 v3.0   1 1
No Yes Thecamonas trahens ATCC 50062   1 1
No Yes Bigelowiella natans CCMP2755 22   18 12
No Yes Giardia lamblia 2.3   26 14
No Yes Cyanophora paradoxa   4 4
No Yes Ectocarpus siliculosus   10 9
No Yes Albugo laibachii 22   3 3
No Yes Pythium iwayamai DAOM BR242034 22   4 4
No Yes Pythium arrhenomanes ATCC 12531 22   7 6
No Yes Pythium ultimum v1.7-2   2 2
No Yes Pythium aphanidermatum DAOM BR444 22   5 4
No Yes Pythium irregulare DAOM BR486 22   2 2
No Yes Pythium vexans DAOM BR484 22   1 1
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 3 3
No Yes Phaeodactylum tricornutumCCAP 1055/1   6 4
No Yes Fragilariopsis cylindrus   14 10
No Yes Thalassiosira pseudonana CCMP1335   6 4
No Yes Perkinsus marinus ATCC 50983   3 3
No Yes Paramecium tetraurelia   10 10
No Yes Tetrahymena thermophila SB210 1   4 4
No Yes Ichthyophthirius multifiliis strain G5   1 1
No Yes Cryptosporidium hominis   7 6
No Yes Cryptosporidium muris   13 7
No Yes Cryptosporidium parvum Iowa II   12 7
No Yes Neospora caninum   12 7
No Yes Toxoplasma gondii VEG   12 6
No Yes Toxoplasma gondii ME49   14 8
No Yes Toxoplasma gondii GT1   8 5
No Yes Babesia bovis T2Bo   4 2
No Yes Theileria parva   1 1
No Yes Plasmodium falciparum 3D7   10 7
No Yes Plasmodium vivax SaI-1 7.0   12 8
No Yes Plasmodium knowlesi strain H   13 9
No Yes Plasmodium yoelii ssp. yoelii 1   8 5
No Yes Plasmodium chabaudi   9 6
No Yes Plasmodium berghei ANKA   10 6
No Yes Symbiodinium minutum clade B1 v1.2   10 7
No Yes Naegleria gruberi   15 13
No Yes Guillardia theta CCMP2712 v1.0   24 18
No Yes Emiliania huxleyi CCMP1516   3 3
No Yes Haliscomenobacter hydrossis DSM 1100   1 1
No Yes Odoribacter splanchnicus DSM 20712   1 1
No Yes Haliangium ochraceum DSM 14365   1 1
No Yes Stigmatella aurantiaca DW4/3-1   1 1
No Yes Myxococcus xanthus DK 1622   1 1
No Yes Myxococcus fulvus HW-1   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 774 252
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 393 99
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 218 56
No Yes Ascaris suum Victoria/Ghent Pig roundworm 227 76
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 360 114
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 6 6
No Yes Hordeum vulgare 22 Domesticated barley 56 56
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 42 42
No Yes Neospora caninum Nc-Liverpool 6.2   12 7
No Yes Plasmodium falciparum HB3   9 6
No Yes Plasmodium falciparum Dd2   6 4
No Yes Myxococcus stipitatus DSM 14675   2 2
No Yes Homo sapiens 75_37 (old version GRC) Human 1814 677
No Yes Homo sapiens (NCBI version) Human 877 288
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 556 169
No Yes Heliconius numata (Incomplete)   14 9
No Yes Loa loa v3.3 (Request) Eye worm 185 61
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 186 80
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 169 51
No Yes Picea sitchensis (Incomplete) Sitka spruce 1 1
No Yes Lotus japonicus (Early assembly)   3 3
No Yes Malus x domestica (Duplicate) Apple 25 25
No Yes Ricinus communis (Early assembly) Castor bean 5 5
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   4 4
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 6 6
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 6 6
No Yes Phoenix dactylifera (Early draft) Date palm 4 4
No Yes Homo sapiens 69_37 Human 710 195
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 517 157
No Yes Gorilla gorilla 69_3.1 Western gorilla 571 161
No Yes Pongo abelii 69_2 Sumatran orangutan 519 168
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 495 156
No Yes Macaca mulatta 69_1 Rhesus monkey 556 172
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 578 165
No Yes Otolemur garnettii 69_3 Small-eared galago 549 170
No Yes Microcebus murinus 69_1 Gray mouse lemur 455 139
No Yes Rattus norvegicus 69_3.4 Norway rat 574 173
No Yes Mus musculus 69_38 House mouse 554 169
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 513 143
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 502 156
No Yes Cavia porcellus 69_3 Domestic guinea pig 558 163
No Yes Oryctolagus cuniculus 69_2 Rabbit 463 150
No Yes Ochotona princeps 69 American pika 469 142
No Yes Tupaia belangeri 69 Northern tree shrew 407 132
No Yes Sus scrofa 69_10.2 Pig 467 164
No Yes Bos taurus 69_3.1 Cattle 558 165
No Yes Vicugna pacos 69_1 Alpaca 260 102
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 526 156
No Yes Mustela putorius furo 69_1.0 Domestic ferret 565 183
No Yes Ailuropoda melanoleuca 69_1 Giant panda 551 166
No Yes Canis familiaris 69_3.1 Dog 552 165
No Yes Felis catus 69 Domestic cat 380 133
No Yes Equus caballus 69_2 Horse 546 178
No Yes Myotis lucifugus 69_2.0 Little brown bat 472 160
No Yes Pteropus vampyrus 69_1 Large flying fox 525 162
No Yes Sorex araneus 69_1 European shrew 286 102
No Yes Erinaceus europaeus 69 Western European hedgehog 383 118
No Yes Procavia capensis 69_1 Cape rock hyrax 458 148
No Yes Loxodonta africana 69_3 African savanna elephant 526 165
No Yes Echinops telfairi 69 Small Madagascar hedgehog 391 135
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 322 125
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 267 97
No Yes Macropus eugenii 69_1.0 Tammar wallaby 454 139
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 491 158
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 567 166
No Yes Ornithorhynchus anatinus 69_5 Platypus 452 168
No Yes Petromyzon marinus 69_7.0 Sea lamprey 203 84
No Yes Meleagris gallopavo 69_2 Turkey 471 152
No Yes Gallus gallus 69_2 Chicken 516 150
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 494 162
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 497 161
No Yes Anolis carolinensis 69_2.0 Green anole 510 157
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 553 156
No Yes Latimeria chalumnae 69_1 Coelacanth 639 183
No Yes Gadus morhua 69_1 Atlantic cod 547 170
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 693 221
No Yes Takifugu rubripes 69_4 Torafugu 677 202
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 659 191
No Yes Oryzias latipes 69_1 Japanese medaka 656 187
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 627 196
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 749 202
No Yes Danio rerio 69_9 Zebrafish 769 240
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 523 112
No Yes Ciona intestinalis 69 Vase tunicate 408 143
No Yes Drosophila melanogaster 69_5 Fruit fly 218 50
No Yes Caenorhabditis elegans 69_215 Roundworm 241 74
No Yes Arabidopsis thaliana 10 Thale cress 5 5
No Yes 1_050719N (meta-genome)   1 1
No Yes 3_Below_base_of_euphotic (meta-genome)   2 1
No Yes 7_Oxygen_minimum_layer (meta-genome)   1 1
No Yes Activated sludge plasmid pool Morges-2009 (Newbler) (meta-genome)   1 1
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   1 1
No Yes Combined (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Endophytic microbiome from Rice (meta-genome)   2 2
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   2 2
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   2 1
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   2 1
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   2 2
No Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome)   1 1
No Yes NCBI 2017_08 genome   302166 90591
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes Protozoadb 2010_08 (Protozoadb)   242 149
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   13 7
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   6 3
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   6 3
No Yes STRING v9.0.5 (STRING)   25827 7909
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   1 1
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   2 1
No Yes Uniprot 2018_03 genome   214533 69342
No Yes Global Ocean Sampling Expedition (GOS)   425 226
No Yes NCBI viral sequences (Viral)   27 26
No Yes PDB chains (SCOP 1.75) (PDB)   117 88
No Yes Protein Data Bank (all PDB sequenc)   1179 857
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   2437 2434
No Yes TargetDB (Targets)   486 191
No Yes UniProt viral sequences (Viral)   82 69

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]