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  Home > Genomes > Brugia malayi v1.0 > Immunoglobulin domains


Immunoglobulin superfamily domain assignments
in
Brugia malayi v1.0

Assignment details

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Brugia malayi v1.0 (Duplicate) has 270 significant domains in 61 proteins.

     

Sequence ID   Evalue   Region   Family  
Bm1_00665   0.000000000261   247-336   I set domains  
Bm1_00885   0.0000000000000491   165-252   I set domains  
  0.00000000000109   60-151   I set domains  
  0.00215   12-56   I set domains  
Bm1_01470   1.39e-18   36-119   I set domains  
  0.00000000000000273   126-157,193-249   I set domains  
  0.000000000000155   250-346   I set domains  
Bm1_02995   2.55e-16   129-243   I set domains  
  0.0000000000182   31-119   I set domains  
  0.000754   220-263   I set domains  
Bm1_06225   2.75e-26   196-291   I set domains  
  2.22e-22   105-203   I set domains  
  5.8e-22   286-381   I set domains  
  3.59e-17   2-99   I set domains  
Bm1_06230   3.13e-18   15-108   I set domains  
Bm1_07425   4.89e-19   179-292   I set domains  
  9.93e-18   103-205   I set domains  
  0.000000000187   2-109   I set domains  
Bm1_08915   0.000000722   178-215,285-357   I set domains  
Bm1_11275   0.0000269   14-93   V set domains (antibody variable domain-like)  
Bm1_11675   0.0000000000000286   61-130   I set domains  
  0.00000000000171   169-253   I set domains  
  0.00000704   2-58   V set domains (antibody variable domain-like)  
Bm1_12515   1.48e-27   3866-3999   I set domains  
  2.8e-25   2298-2392   I set domains  
  2.42e-23   2087-2180   I set domains  
  3.81e-22   3346-3437   I set domains  
  6.31e-22   1566-1661   I set domains  
  7.8e-22   1665-1752   I set domains  
  1.67e-21   3654-3747   I set domains  
  2.93e-21   1983-2074   I set domains  
  3.1e-21   353-445   I set domains  
  3.33e-21   4299-4393   I set domains  
  5.16e-21   1273-1367   I set domains  
  3.59e-20   3761-3853   I set domains  
  5.17e-20   1773-1862   I set domains  
  2.41e-19   1366-1464   I set domains  
  2.45e-19   2193-2285   I set domains  
  4.7e-19   3551-3643   I set domains  
  9.85e-19   1473-1564   I set domains  
  2.81e-18   880-975   I set domains  
  3.37e-18   985-1077   I set domains  
  3.79e-18   647-741   I set domains  
  5.98e-18   4657-4748   I set domains  
  1.79e-17   4072-4159   I set domains  
  1.69e-16   2583-2672   I set domains  
  2.43e-16   550-642   I set domains  
  3.08e-16   4187-4283   I set domains  
  4.19e-16   3245-3326   I set domains  
  0.0000000000000015   1182-1270   I set domains  
  0.00000000000000231   3148-3241   I set domains  
  0.00000000000000233   739-828   I set domains  
  0.00000000000000674   3055-3153   I set domains  
  0.0000000000000177   60-152   I set domains  
  0.0000000000000229   1079-1169   I set domains  
  0.0000000000000367   2961-3050   I set domains  
  0.0000000000000462   256-354   I set domains  
  0.0000000000000469   2759-2860   I set domains  
  0.000000000000059   2864-2958   I set domains  
  0.000000000000163   2676-2767   I set domains  
  0.000000000000183   3445-3534   I set domains  
  0.00000000000021   1882-1972   I set domains  
  0.000000000000491   2490-2578   I set domains  
  0.000000000000603   4559-4660   I set domains  
  0.00000000000301   451-544   I set domains  
  0.0000000000143   158-252   I set domains  
  0.000000000237   2398-2485   I set domains  
  0.00000556   4011-4059   I set domains  
  0.00143   9-59   I set domains  
Bm1_14520   1.82e-20   1885-1978   I set domains  
  2.55e-17   3043-3137   I set domains  
  4.23e-17   1972-2068   I set domains  
  1.26e-16   2853-2947   I set domains  
  0.000000000000734   2069-2155   I set domains  
  0.00000000000696   1509-1594   I set domains  
  0.0000000000439   532-625   I set domains  
  0.000000000203   442-516   I set domains  
  0.000000000233   1407-1494   I set domains  
  0.00000000957   2775-2850   I set domains  
  0.0000000193   2174-2263   I set domains  
  0.0000000333   1321-1383   I set domains  
  0.0000293   352-436   I set domains  
Bm1_14530   5.38e-23   2193-2281   I set domains  
  9.85e-20   1606-1697   I set domains  
  5.75e-19   5601-5684   I set domains  
  7.06e-18   1269-1365   I set domains  
  2.97e-16   1396-1483   I set domains  
  0.00000000000000104   5731-5820   I set domains  
  0.0000000000000311   5480-5574   I set domains  
  0.000000000000237   230-303,490-554   I set domains  
  0.000000000000266   109-200   I set domains  
  0.00000000000159   4062-4148   I set domains  
  0.00000000285   4171-4242   I set domains  
  0.0000000105   1038-1080,1180-1249   I set domains  
  0.0000000805   4273-4346   I set domains  
  0.0000000919   6125-6211   I set domains  
  0.0000000921   926-1017   I set domains  
  0.000000864   795-885   I set domains  
  0.000000888   3961-4035   V set domains (antibody variable domain-like)  
Bm1_19055   4.47e-22   590-689   I set domains  
  0.00000000000653   490-599   I set domains  
  0.000000000154   692-780   V set domains (antibody variable domain-like)  
Bm1_19860   0.000000045   17-64   I set domains  
Bm1_20125   1.94e-24   1512-1606   I set domains  
  1.14e-22   789-880   I set domains  
  1.8e-21   683-774   I set domains  
  1.94e-21   2181-2276   I set domains  
  2.09e-20   1417-1508   I set domains  
  6.27e-20   2388-2479   I set domains  
  1.25e-19   885-978   I set domains  
  2.21e-18   1839-1931   I set domains  
  4.67e-18   1098-1187   I set domains  
  7.29e-18   991-1082   I set domains  
  2.38e-17   2282-2377   I set domains  
  7.5e-17   2486-2572   I set domains  
  9.28e-17   465-558   I set domains  
  3.73e-16   1628-1721   I set domains  
  0.00000000000000158   2073-2165   I set domains  
  0.00000000000000671   1732-1831   I set domains  
  0.000000000000217   586-676   I set domains  
  0.00000000000314   1297-1394   I set domains  
Bm1_22505   0.00000164   177-272   V set domains (antibody variable domain-like)  
Bm1_24325   0.00000000123   48-123   I set domains  
Bm1_26135   0.00000000000000128   377-453   I set domains  
Bm1_26690   5.3e-20   293-392   I set domains  
  4.88e-19   432-525   I set domains  
  3.57e-18   53-149   I set domains  
  7.25e-17   190-284   I set domains  
  0.00000000079   567-608   I set domains  
Bm1_27790   0.0000000000771   51-159   I set domains  
  0.000496   3-41   I set domains  
Bm1_29710   6.79e-20   157-224   I set domains  
  0.0229   58-125   I set domains  
Bm1_31415   1.4e-17   97-176   I set domains  
  0.00000000000000338   197-233,273-315   I set domains  
  0.000000000942   2-64   I set domains  
Bm1_31555   5.09e-19   24-115   V set domains (antibody variable domain-like)  
Bm1_31560   0.000055   6-91   C1 set domains (antibody constant domain-like)  
Bm1_35295   5.3e-16   2-52,123-196   I set domains  
Bm1_36300   0.000000182   609-711   V set domains (antibody variable domain-like)  
Bm1_36305   0.000000000801   29-66,113-149   I set domains  
Bm1_37025   9.49e-20   402-450,492-499,546-614   I set domains  
  0.000000000000391   26-132   C1 set domains (antibody constant domain-like)  
  0.000000000675   128-220   I set domains  
  0.000000000868   426-518   I set domains  
  0.00000000381   318-406   I set domains  
  0.000116   246-295   I set domains  
Bm1_37445   0.00000000000184   704-783   I set domains  
  0.0000000313   294-388   I set domains  
  0.0000000323   610-700   I set domains  
  0.0000000617   105-184   V set domains (antibody variable domain-like)  
  0.00221   403-490   I set domains  
Bm1_37570   0.0000000000000295   415-493   I set domains  
  0.0000000481   213-279   I set domains  
  0.000000104   97-178   I set domains  
  0.0000603   3-62   V set domains (antibody variable domain-like)  
Bm1_38455   2.93e-17   426-524   I set domains  
  0.0000000000000673   250-339   I set domains  
  0.00000000000027   21-126   I set domains  
  0.00000000000252   343-410   I set domains  
  0.0000377   139-164,193-256   C1 set domains (antibody constant domain-like)  
Bm1_38605   3.08e-17   163-249   I set domains  
  0.00000000000196   60-150   I set domains  
Bm1_38910   0.000000000000141   25-112   I set domains  
Bm1_38915   1.11e-19   112-208   I set domains  
  0.000000000000895   24-121   I set domains  
Bm1_39080   9.64e-24   108-201   I set domains  
  8.03e-20   15-103   I set domains  
Bm1_39130   0.00000000000593   127-227   C1 set domains (antibody constant domain-like)  
  0.00000000000834   433-531   I set domains  
  0.0000000000112   730-827   I set domains  
  0.0000000000742   240-332   I set domains  
  0.000000000142   25-128   I set domains  
  0.00000000593   331-430   I set domains  
  0.00000000861   530-639   I set domains  
  0.000000146   796-921   I set domains  
  0.000000312   635-729   I set domains  
Bm1_39425   7.57e-23   6448-6539   I set domains  
  1.17e-22   5512-5613   I set domains  
  1.4e-22   5124-5220   I set domains  
  4.56e-21   5615-5708   I set domains  
  2.11e-20   6175-6266   I set domains  
  2.26e-20   6299-6391   I set domains  
  4.64e-20   3452-3545   I set domains  
  5.16e-20   2864-2957   I set domains  
  5.37e-20   1683-1778   I set domains  
  6.71e-20   1979-2073   I set domains  
  8.86e-20   565-658   I set domains  
  1.01e-19   2565-2660   I set domains  
  7.36e-18   1389-1481   I set domains  
  5.4e-17   3158-3252   I set domains  
  6.9e-17   2272-2365   I set domains  
  2.9e-16   4732-4823   I set domains  
  0.00000000000000122   3-100   I set domains  
  0.00000000000000157   112-208   I set domains  
  0.00000000000000467   4434-4530   I set domains  
  0.00000000000000838   4044-4132   I set domains  
  0.0000000000000296   896-980   I set domains  
  0.000000000000055   719-801   I set domains  
  0.000000000000112   3739-3840   I set domains  
  0.000000000000801   6596-6685   I set domains  
  0.00000000000909   5217-5317   I set domains  
  0.000000000658   804-884   I set domains  
  0.00000000198   986-1078   I set domains  
  0.000000114   6693-6765   I set domains  
  0.000000584   1095-1184   I set domains  
Bm1_39630   6.95e-18   327-423   I set domains  
  0.0000000000000934   425-521   I set domains  
  0.00000000000199   44-122   I set domains  
  0.00000000000301   243-326   I set domains  
  0.00000000405   133-214   I set domains  
  0.00000000965   527-634   I set domains  
Bm1_39825   0.000000000000252   234-319   C1 set domains (antibody constant domain-like)  
Bm1_40320   1.57e-16   20-101   I set domains  
  0.0000000000000213   106-208   I set domains  
  0.00000000000153   208-310   I set domains  
Bm1_40455   1.07e-17   429-515   I set domains  
  4.35e-17   520-632   I set domains  
  3.73e-16   36-131   I set domains  
Bm1_40760   0.000000126   813-884   I set domains  
Bm1_41690   9.11e-22   257-349   I set domains  
  1.93e-19   175-270   I set domains  
  2.93e-17   71-161   I set domains  
  0.0000831   9-58   I set domains  
Bm1_42725   4.23e-17   45-126   I set domains  
Bm1_42850   1.18e-19   11-103   I set domains  
Bm1_42980   1.31e-16   4-90   I set domains  
Bm1_43985   0.00000000000000249   70-150   I set domains  
Bm1_45170   0.0000052   441-530   I set domains  
Bm1_45475   0.000000000245   245-339   I set domains  
  0.0000000193   636-727   I set domains  
  0.000000104   441-544   I set domains  
  0.00000128   1762-1839   I set domains  
  0.00000383   1138-1222   I set domains  
  0.000233   1435-1513   I set domains  
  0.0485   828-935   I set domains  
Bm1_46565   0.000000000000183   16-111   V set domains (antibody variable domain-like)  
  0.000000000238   131-207   I set domains  
Bm1_49030   2.13e-16   137-205   I set domains  
Bm1_49260   3.71e-16   33-131   I set domains  
Bm1_50375   1.31e-22   266-356   I set domains  
  1.53e-22   364-448   I set domains  
Bm1_51055   4.46e-24   848-942   I set domains  
  1.72e-19   743-835   I set domains  
  4.49e-19   1308-1402   I set domains  
  1.37e-18   1406-1498   I set domains  
  6.86e-18   963-1055   I set domains  
  7.34e-16   1119-1217   I set domains  
Bm1_53960   4.68e-19   321-410   I set domains  
Bm1_54260   7.92e-23   1057-1155   I set domains  
  5.5e-21   1589-1686   I set domains  
  1.23e-20   1457-1554   I set domains  
  8.32e-20   275-366   I set domains  
  2.38e-19   1856-1950   I set domains  
  6.51e-19   173-268   I set domains  
  9.17e-19   407-501   I set domains  
  1.69e-18   532-625   I set domains  
  9.84e-17   1726-1818   I set domains  
  1.32e-16   652-746   I set domains  
  8.26e-16   1327-1420   I set domains  
  0.0000000000000011   791-886   I set domains  
  0.0000000000000389   1191-1287   I set domains  
  0.0000000000000494   927-1020   I set domains  
Bm1_55550   3.37e-21   1089-1185   I set domains  
  2.68e-19   229-325   I set domains  
  7.17e-19   379-463   I set domains  
  1.05e-18   629-722   I set domains  
  1.76e-18   954-1049   I set domains  
  4.17e-18   769-855   I set domains  
  8.99e-17   1225-1317   I set domains  
  1.45e-16   100-194   I set domains  
  0.00000000000136   495-590   I set domains  
  0.00000000000433   2-62   I set domains  
Bm1_56905   4.89e-25   166-257   I set domains  
  9.76e-22   272-364   I set domains  
  1.02e-20   69-161   I set domains  
  2.04e-19   407-497   I set domains  
Bm1_57570   0.000000000000256   394-475   I set domains  
Bm1_57640   1.39e-21   9-100   I set domains  
 
Weak hits:
Bm1_16570   0.0179   63-103   V set domains (antibody variable domain-like)  
Bm1_22035   0.00334   179-212   V set domains (antibody variable domain-like)  
Bm1_33260   0.00111   1006-1088   V set domains (antibody variable domain-like)  
Bm1_37020   0.0112   33-89   V set domains (antibody variable domain-like)  
Bm1_43875   0.00393   177-209   C2 set domains  
Bm1_48235   0.00369   547-600   I set domains  

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Select to display   Genome       Domains   Proteins
No Yes ALL   2123733 2123733
No Yes Homo sapiens 76_38 Human 9232 3924
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 1492 525
No Yes Gorilla gorilla 76_3.1 Western gorilla 1998 762
No Yes Pongo abelii 76_2 Sumatran orangutan 1642 661
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 1390 507
No Yes Papio anubis 76 Olive baboon 1890 778
No Yes Macaca mulatta 76_1 Rhesus monkey 2796 1124
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 3138 1212
No Yes Otolemur garnettii 76_3 Small-eared galago 1376 593
No Yes Microcebus murinus 76_1 Gray mouse lemur 1041 391
No Yes Rattus norvegicus 76_5.0 Norway rat 1966 980
No Yes Mus musculus 76_38 House mouse 4012 1454
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 1059 356
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 1392 640
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 1531 597
No Yes Cavia porcellus 76_3 Domestic guinea pig 1559 605
No Yes Oryctolagus cuniculus 76_2 Rabbit 1650 736
No Yes Ochotona princeps 76 American pika 1041 343
No Yes Tupaia belangeri 76 Northern tree shrew 1007 471
No Yes Sus scrofa 76_10.2 Pig 1699 799
No Yes Bos taurus 76_3.1 Cattle 1788 729
No Yes Ovis aries 76_3.1 Sheep 1846 764
No Yes Vicugna pacos 76_1 Alpaca 640 222
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 1191 367
No Yes Mustela putorius furo 76_1.0 Domestic ferret 1563 600
No Yes Ailuropoda melanoleuca 76_1 Giant panda 1876 655
No Yes Canis familiaris 76_3.1 Dog 2158 770
No Yes Felis catus 76_6.2 Domestic cat 1543 615
No Yes Equus caballus 76_2 Horse 2007 791
No Yes Myotis lucifugus 76_2.0 Little brown bat 2239 1106
No Yes Pteropus vampyrus 76_1 Large flying fox 1200 401
No Yes Sorex araneus 76_1 European shrew 942 539
No Yes Erinaceus europaeus 76 Western European hedgehog 969 405
No Yes Procavia capensis 76_1 Cape rock hyrax 1092 373
No Yes Loxodonta africana 76_3 African savanna elephant 2066 883
No Yes Echinops telfairi 76 Small Madagascar hedgehog 1087 548
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 2308 1214
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 599 216
No Yes Macropus eugenii 76_1.0 Tammar wallaby 1039 352
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 1834 690
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 2040 747
No Yes Ornithorhynchus anatinus 76_5 Platypus 1277 647
No Yes Saccoglossus kowalevskii v3.0   3527 483
No Yes Petromyzon marinus 76_7.0 Sea lamprey 552 133
No Yes Meleagris gallopavo 76_2 Turkey 1176 427
No Yes Gallus gallus 76_4 Chicken 1449 576
No Yes Anas platyrhynchos 76_1.0 Mallard 1092 350
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 851 332
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 1041 343
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 1607 627
No Yes Anolis carolinensis 76_2.0 Green anole 1182 451
No Yes Xenopus laevis African clawed frog 1483 699
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 1906 696
No Yes Latimeria chalumnae 76_1 Coelacanth 1644 641
No Yes Lepisosteus oculatus 76 Spotted gar 2202 881
No Yes Gadus morhua 76_1 Atlantic cod 1454 522
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 1827 649
No Yes Takifugu rubripes 76_4 Torafugu 5014 1617
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 1953 750
No Yes Oryzias latipes 76_1 Japanese medaka 1615 623
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 1692 566
No Yes Poecilia formosa 76 Amazon molly 2332 797
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 3237 1279
No Yes Astyanax mexicanus 76 Mexican tetra 1924 735
No Yes Danio rerio 76_9 Zebrafish 4352 1482
No Yes Oikopleura dioica   299 73
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 781 156
No Yes Ciona intestinalis 76 Vase tunicate 354 98
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 1408 458
No Yes Adineta vaga   702 180
No Yes Octopus bimaculoides 280   778 217
No Yes Crassostrea gigas 22 Pacific oyster 750 268
No Yes Lottia gigantea Owl limpet 539 236
No Yes Helobdella robusta   600 261
No Yes Capitella sp. I   502 223
No Yes Danaus plexippus OGS1.0 Monarch butterfly 636 189
No Yes Heliconius melpomene Postman butterfly 484 177
No Yes Bombyx mori Domestic silkworm 472 219
No Yes Nasonia vitripennis Jewel wasp 321 98
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 1147 323
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 451 131
No Yes Linepithema humile v1.1 Argentine ant 466 212
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 477 238
No Yes Solenopsis invicta v.2.2.3 Red fire ant 408 199
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 468 143
No Yes Atta cephalotes v1.1   479 225
No Yes Camponotus floridanus v3.3 Florida carpenter ant 488 138
No Yes Lucilia cuprina Australian sheep blowfly 486 136
No Yes Drosophila grimshawi 1.3   551 145
No Yes Drosophila willistoni 1.3   528 143
No Yes Drosophila pseudoobscura 2.13   565 147
No Yes Drosophila persimilis 1.3   458 151
No Yes Drosophila suzukii   573 127
No Yes Drosophila yakuba 1.3   523 141
No Yes Drosophila simulans 1.3   396 143
No Yes Drosophila sechellia 1.3   510 146
No Yes Drosophila melanogaster 76_5 Fruit fly 3044 444
No Yes Drosophila erecta 1.3   533 140
No Yes Drosophila ananassae 1.3   525 138
No Yes Drosophila virilis 1.2   531 142
No Yes Drosophila mojavensis 1.3   520 140
No Yes Megaselia scalaris 22   232 125
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 554 165
No Yes Culex pipiens quinquefasciatus Southern house mosquito 518 202
No Yes Anopheles darlingi 22 American malaria mosquito 410 129
No Yes Anopheles gambiae 49_3j African malaria mosquito 659 167
No Yes Tribolium castaneum 3.0 Red flour beetle 491 143
No Yes Pediculus humanus corporis (Early assembly) Human body louse 497 128
No Yes Acyrthosiphon pisum Pea aphid 347 101
No Yes Rhodnius prolixus 22   419 164
No Yes Daphnia pulex Common water flea 522 181
No Yes Strigamia maritima 22   1045 252
No Yes Sarcoptes scabiei   357 136
No Yes Tetranychus urticae Two-spotted spider mite 626 187
No Yes Ixodes scapularis (Preliminary) Black-legged tick 645 249
No Yes Pristionchus pacificus   346 96
No Yes Meloidogyne incognita Southern root-knot nematode 394 80
No Yes Meloidogyne hapla   112 43
No Yes Onchocerca volvulus 22   357 73
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 859 117
No Yes Caenorhabditis japonica   345 83
No Yes Caenorhabditis brenneri   457 104
No Yes Caenorhabditis remanei   399 88
No Yes Caenorhabditis elegans 76_235 Roundworm 1705 181
No Yes Caenorhabditis briggsae 2   382 76
No Yes Trichinella spiralis 22   320 74
No Yes Hymenolepis microstoma   257 72
No Yes Echinococcus multilocularis   271 76
No Yes Echinococcus granulosus   268 75
No Yes Taenia solium Pork tapeworm 255 96
No Yes Schistosoma mansoni   277 99
No Yes Mnemiopsis leidyi Sea walnut 563 186
No Yes Thelohanellus kitauei   11 8
No Yes Acropora digitifera v1.0   1090 426
No Yes Nematostella vectensis 1.0 Starlet sea anemone 451 195
No Yes Hydra vulgaris   267 91
No Yes Amphimedon queenslandica   941 314
No Yes Trichoplax adhaerens   165 73
No Yes Proterospongia sp. ATCC 50818   7 6
No Yes Monosiga brevicollis   1 1
No Yes Sporisorium reilianum 22   1 1
No Yes Ustilago maydis   1 1
No Yes Dictyostelium discoideum   1 1
No Yes Chlamydomonas reinhardtii 4.0   1 1
No Yes Ectocarpus siliculosus   2 1
No Yes Albugo laibachii 22   1 1
No Yes Pythium iwayamai DAOM BR242034 22   2 2
No Yes Pythium arrhenomanes ATCC 12531 22   1 1
No Yes Pythium ultimum v1.7-2   1 1
No Yes Pythium aphanidermatum DAOM BR444 22   1 1
No Yes Pythium irregulare DAOM BR486 22   1 1
No Yes Pythium vexans DAOM BR484 22   1 1
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 1 1
No Yes Phytophthora infestans T30-4   1 1
No Yes Phytophthora capsici   1 1
No Yes Symbiodinium minutum clade B1 v1.2   1 1
No Yes Anabaena variabilis ATCC 29413   1 1
No Yes Conexibacter woesei DSM 14684   3 3
No Yes Olsenella uli DSM 7084   1 1
No Yes Streptomyces griseus subsp. griseus NBRC 13350   2 2
No Yes Streptomyces bingchenggensis BCW-1   1 1
No Yes Streptomyces violaceusniger Tu 4113   1 1
No Yes Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1   3 3
No Yes Salinispora arenicola CNS-205   1 1
No Yes Sanguibacter keddieii DSM 10542   1 1
No Yes Leifsonia xyli subsp. xyli str. CTCB07   1 1
No Yes Microbacterium testaceum StLB037   1 1
No Yes Cellulomonas flavigena DSM 20109   7 3
No Yes Cellulomonas fimi ATCC 484   3 2
No Yes [Cellvibrio] gilvus ATCC 13127   9 3
No Yes Dehalogenimonas lykanthroporepellens BL-DC-9   2 1
No Yes Herpetosiphon aurantiacus DSM 785   1 1
No Yes Ruminococcus albus 7   5 1
No Yes Sulfobacillus acidophilus DSM 10332   2 1
No Yes Desulfosporosinus orientis DSM 765   1 1
No Yes Desulfitobacterium hafniense Y51   2 1
No Yes Desulfotomaculum acetoxidans DSM 771   1 1
No Yes Desulfotomaculum ruminis DSM 2154   2 1
No Yes Eubacterium eligens ATCC 27750   1 1
No Yes Heliobacterium modesticaldum Ice1   9 3
No Yes Clostridium cellulovorans 743B   2 1
No Yes Streptococcus agalactiae A909   1 1
No Yes Ignavibacterium album JCM 16511   1 1
No Yes Haliscomenobacter hydrossis DSM 1100   2 2
No Yes Saprospira grandis str. Lewin   1 1
No Yes Niastella koreensis GR20-10   4 4
No Yes Chitinophaga pinensis DSM 2588   3 3
No Yes Flexibacter litoralis DSM 6794   7 5
No Yes Cyclobacterium marinum DSM 745   1 1
No Yes Fibrella aestuarina   5 5
No Yes Dyadobacter fermentans DSM 18053   2 2
No Yes Cytophaga hutchinsonii ATCC 33406   31 13
No Yes Spirosoma linguale DSM 74   7 6
No Yes Runella slithyformis DSM 19594   1 1
No Yes Porphyromonas asaccharolytica DSM 20707   2 2
No Yes Pedobacter saltans DSM 12145   3 3
No Yes Solitalea canadensis DSM 3403   16 5
No Yes Sphingobacterium sp. 21   2 2
No Yes Fluviicola taffensis DSM 16823   3 3
No Yes Owenweeksia hongkongensis DSM 17368   2 1
No Yes Lacinutrix sp. 5H-3-7-4   1 1
No Yes Maribacter sp. HTCC2170   2 2
No Yes Robiginitalea biformata HTCC2501   1 1
No Yes Zobellia galactanivorans   2 2
No Yes Muricauda ruestringensis DSM 13258   2 1
No Yes Cellulophaga algicola DSM 14237   2 2
No Yes Cellulophaga lytica DSM 7489   1 1
No Yes Flavobacteriaceae bacterium 3519-10   1 1
No Yes Polaribacter sp. MED152   5 2
No Yes Capnocytophaga canimorsus Cc5   2 1
No Yes Flavobacterium indicum GPTSA100-9   3 3
No Yes Flavobacterium johnsoniae UW101   3 3
No Yes Opitutus terrae PB90-1   62 37
No Yes Treponema primitia ZAS-2   1 1
No Yes Candidatus Solibacter usitatus Ellin6076   1 1
No Yes Granulicella tundricola MP5ACTX9   5 1
No Yes Granulicella mallensis MP5ACTX8   7 2
No Yes Candidatus Koribacter versatilis Ellin345   1 1
No Yes Terriglobus saanensis SP1PR4   9 2
No Yes Bdellovibrio bacteriovorus HD100   1 1
No Yes Babela massiliensis   39 4
No Yes Anaeromyxobacter dehalogenans 2CP-1   1 1
No Yes Stigmatella aurantiaca DW4/3-1   5 2
No Yes Corallococcus coralloides DSM 2259   2 2
No Yes Myxococcus fulvus HW-1   1 1
No Yes Dechloromonas aromatica RCB   1 1
No Yes Leptothrix cholodnii SP-6   1 1
No Yes Ralstonia solanacearum CFBP2957   1 1
No Yes Burkholderia gladioli BSR3   4 1
No Yes Shewanella baltica OS185   1 1
No Yes Pseudoalteromonas sp. SM9913   1 1
No Yes Hahella chejuensis KCTC 2396   4 4
No Yes Legionella longbeachae NSW150   2 1
No Yes gamma proteobacterium HdN1   6 3
No Yes Shigella boydii CDC 3083-94   1 1
No Yes Klebsiella oxytoca E718   1 1
No Yes Sulfolobus tokodaii str. 7   1 1
No Yes Methanosaeta harundinacea 6Ac   1 1
No Yes Methanosaeta thermophila PT   1 1
No Yes Methanosaeta concilii GP6   22 1
No Yes Methanoplanus petrolearius DSM 11571   2 2
No Yes Methanoculleus bourgensis MS2   1 1
No Yes Thermococcus gammatolerans EJ3   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 2058 791
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 1952 345
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 757 184
No Yes Ascaris suum Victoria/Ghent Pig roundworm 365 74
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 1202 143
No Yes Streptomyces davawensis JCM 4913   1 1
No Yes Streptomyces fulvissimus DSM 40593   1 1
No Yes Corynebacterium argentoratense DSM 44202   1 1
No Yes Leifsonia xyli subsp. cynodontis DSM 46306   1 1
No Yes Actinomyces odontolyticus ATCC 17982   1 1
No Yes Deinococcus peraridilitoris DSM 19664   1 1
No Yes Ruminococcus champanellensis 18P13   1 1
No Yes Sulfobacillus acidophilus TPY   2 1
No Yes Desulfitobacterium hafniense DCB-2   2 2
No Yes Clostridium saccharobutylicum DSM 13864   1 1
No Yes Streptococcus dysgalactiae subsp. equisimilis AC-2713   1 1
No Yes Streptococcus pneumoniae TIGR4   1 1
No Yes Streptococcus agalactiae GD201008-001   1 1
No Yes Emticicia oligotrophica DSM 17448   1 1
No Yes Singulisphaera acidiphila DSM 18658   1 1
No Yes Bdellovibrio exovorus JSS   1 1
No Yes Bdellovibrio bacteriovorus str. Tiberius   1 1
No Yes Anaeromyxobacter sp. K   1 1
No Yes Anaeromyxobacter dehalogenans 2CP-C   6 3
No Yes Myxococcus stipitatus DSM 14675   1 1
No Yes Ralstonia solanacearum FQY_4   1 1
No Yes Ralstonia solanacearum Po82   1 1
No Yes Ralstonia solanacearum PSI07   1 1
No Yes Ralstonia solanacearum CMR15   1 1
No Yes Ralstonia solanacearum GMI1000   1 1
No Yes Shewanella baltica BA175   1 1
No Yes Shewanella baltica OS117   1 1
No Yes Shewanella baltica OS155   1 1
No Yes Serratia liquefaciens ATCC 27592   1 1
No Yes Raoultella ornithinolytica B6   1 1
No Yes Shigella boydii Sb227   1 1
No Yes Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633   1 1
No Yes Salmonella enterica subsp. enterica Serovar Cubana str. CFSAN002050   2 2
No Yes Klebsiella pneumoniae CG43   1 1
No Yes Klebsiella pneumoniae KCTC 2242   1 1
No Yes Enterobacter aerogenes EA1509E   1 1
No Yes Escherichia coli E. coli PMV-1   1 1
No Yes Escherichia coli JJ1886   2 2
No Yes Escherichia coli O7:K1 str. CE10   2 2
No Yes Escherichia coli NA114   2 2
No Yes Escherichia coli 042   1 1
No Yes Escherichia coli Xuzhou21   3 3
No Yes Escherichia coli IHE3034   1 1
No Yes Escherichia coli UMNK88   1 1
No Yes Escherichia coli ABU 83972   1 1
No Yes Escherichia coli ED1a   3 3
No Yes Escherichia coli SMS-3-5   1 1
No Yes Escherichia coli APEC O1   1 1
No Yes Escherichia coli O103:H2 str. 12009   3 3
No Yes Escherichia coli O55:H7 str. RM12579   1 1
No Yes Escherichia coli O55:H7 str. CB9615   2 2
No Yes Escherichia coli O26:H11 str. 11368   4 4
No Yes Escherichia coli O111:H- str. 11128   5 5
No Yes Escherichia coli O127:H6 str. E2348/69   1 1
No Yes Escherichia coli O157:H7 str. TW14359   4 4
No Yes Escherichia coli O157:H7 str. EC4115   2 2
No Yes Escherichia coli O157:H7 str. Sakai   4 4
No Yes Escherichia coli O157:H7 str. EDL933   5 5
No Yes Homo sapiens 75_37 (old version GRC) Human 8350 3634
No Yes Homo sapiens (NCBI version) Human 3275 1048
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 1943 883
No Yes Heliconius numata (Incomplete)   27 17
No Yes Loa loa v3.3 (Request) Eye worm 373 77
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 321 156
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 270 61
No Yes Lotus japonicus (Early assembly)   1 1
No Yes Homo sapiens 69_37 Human 2360 1077
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 1405 486
No Yes Gorilla gorilla 69_3.1 Western gorilla 1473 547
No Yes Pongo abelii 69_2 Sumatran orangutan 1556 624
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 1288 453
No Yes Macaca mulatta 69_1 Rhesus monkey 1500 632
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 1533 588
No Yes Otolemur garnettii 69_3 Small-eared galago 1321 570
No Yes Microcebus murinus 69_1 Gray mouse lemur 1041 391
No Yes Rattus norvegicus 69_3.4 Norway rat 1732 903
No Yes Mus musculus 69_38 House mouse 1972 891
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 1059 356
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 1290 591
No Yes Cavia porcellus 69_3 Domestic guinea pig 1344 564
No Yes Oryctolagus cuniculus 69_2 Rabbit 1539 684
No Yes Ochotona princeps 69 American pika 1041 343
No Yes Tupaia belangeri 69 Northern tree shrew 1007 471
No Yes Sus scrofa 69_10.2 Pig 1199 551
No Yes Bos taurus 69_3.1 Cattle 1574 625
No Yes Vicugna pacos 69_1 Alpaca 640 222
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 1191 367
No Yes Mustela putorius furo 69_1.0 Domestic ferret 1549 592
No Yes Ailuropoda melanoleuca 69_1 Giant panda 1530 590
No Yes Canis familiaris 69_3.1 Dog 1566 569
No Yes Felis catus 69 Domestic cat 944 359
No Yes Equus caballus 69_2 Horse 1667 700
No Yes Myotis lucifugus 69_2.0 Little brown bat 2024 1002
No Yes Pteropus vampyrus 69_1 Large flying fox 1200 401
No Yes Sorex araneus 69_1 European shrew 942 539
No Yes Erinaceus europaeus 69 Western European hedgehog 969 405
No Yes Procavia capensis 69_1 Cape rock hyrax 1092 373
No Yes Loxodonta africana 69_3 African savanna elephant 1489 676
No Yes Echinops telfairi 69 Small Madagascar hedgehog 1087 548
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 816 331
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 599 216
No Yes Macropus eugenii 69_1.0 Tammar wallaby 1039 352
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 1370 565
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 1845 701
No Yes Ornithorhynchus anatinus 69_5 Platypus 1187 598
No Yes Petromyzon marinus 69_7.0 Sea lamprey 493 121
No Yes Meleagris gallopavo 69_2 Turkey 861 311
No Yes Gallus gallus 69_2 Chicken 1123 484
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 807 311
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 1347 543
No Yes Anolis carolinensis 69_2.0 Green anole 1053 397
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 1516 540
No Yes Latimeria chalumnae 69_1 Coelacanth 1436 561
No Yes Gadus morhua 69_1 Atlantic cod 1277 448
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 1417 522
No Yes Takifugu rubripes 69_4 Torafugu 1506 523
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 1565 589
No Yes Oryzias latipes 69_1 Japanese medaka 1338 489
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 1690 564
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 2525 1032
No Yes Danio rerio 69_9 Zebrafish 2645 984
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 253 68
No Yes Ciona intestinalis 69 Vase tunicate 297 90
No Yes Drosophila melanogaster 69_5 Fruit fly 549 134
No Yes Caenorhabditis elegans 69_215 Roundworm 389 75
No Yes 1_050719N (meta-genome)   2 2
No Yes 2_050719S (meta-genome)   1 1
No Yes 3_050719R (meta-genome)   6 5
No Yes 3_Below_base_of_euphotic (meta-genome)   4 2
No Yes 4_050719Q (meta-genome)   18 11
No Yes 4_Deep_abyss (meta-genome)   4 2
No Yes 5_050719P (meta-genome)   24 13
No Yes 5_Below_upper_mesopelagic (meta-genome)   7 3
No Yes 6_Upper_euphotic (meta-genome)   3 3
No Yes 7_Oxygen_minimum_layer (meta-genome)   5 4
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   1 1
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   1 1
No Yes Bath Hot Springs, planktonic community (meta-genome)   5 3
No Yes Combined (meta-genome)   23 17
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   2 2
No Yes Dump bottom (Dump bottom) (meta-genome)   10 10
No Yes Dump top (Dump top) (meta-genome)   14 13
No Yes Endophytic microbiome from Rice (meta-genome)   4 3
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)   4 4
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)   6 5
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   19 13
No Yes Fungus garden combined (combined) (meta-genome)   2 2
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   3 3
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   3 3
No Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes   6 6
No Yes Guerrero Negro salt ponds hypersaline mat 01(G) (meta-genome)   4 4
No Yes Guerrero Negro salt ponds hypersaline mat 02(H) (meta-genome)   5 4
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   3 3
No Yes Guerrero Negro salt ponds hypersaline mat 04(N) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 05(O) (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 07(S) (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 08(T) (meta-genome)   4 2
No Yes Guerrero Negro salt ponds hypersaline mat 09(Y) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 10(Z) (meta-genome)   1 1
No Yes Hindgut microbiome of Nasutitermes sp. (Costa Rica) (meta-genome)   31 25
No Yes Hot Spring microbial communities from Yellowstone Obsidian Hot Spring, Sample 10594 (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP1 from Alice Springs, Crater Hills (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP14 from OSP Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   16 14
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   7 5
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   13 11
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome)   3 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP19 from Cistern Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP2 from Nymph Lake 10 (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome)   13 9
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP3 from Monarch Geyser, Norris Geyser Basin (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome)   10 8
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   11 7
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP9 from Dragon Spring, Norris Geyser Basin (meta-genome)   2 2
No Yes Human Gut Community Subject 7 (meta-genome)   1 1
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   5 4
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   22 20
No Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)   25 22
No Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   223 170
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   59 46
No Yes Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome)   4 3
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   71 53
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   68 54
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   23 16
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   33 30
No Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome)   26 23
No Yes Mouse Gut Community lean3 (meta-genome)   1 1
No Yes NCBI 2017_08 genome   1054584 274847
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   64 46
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   2 2
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   23 16
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   2 2
No Yes Sludge/US, Jazz Assembly (meta-genome)   4 4
No Yes Sludge/US, Phrap Assembly (meta-genome)   4 3
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   62 51
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   66 61
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   15 13
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   6 5
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   10 9
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   89 74
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   81 73
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   48469 18706
No Yes Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing switchgr (meta-genome)   11 10
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   50 42
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   24 22
No Yes Termite Protist Endosymbiont Community (meta-genome)   6 3
No Yes Uniprot 2018_03 genome   530434 198234
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   23 19
No Yes Global Ocean Sampling Expedition (GOS)   257 213
No Yes NCBI plasmid sequences (Plasmids)   20 12
No Yes NCBI viral sequences (Viral)   490 419
No Yes PDB chains (SCOP 1.75) (PDB)   2226 1346
No Yes Protein Data Bank (all PDB sequenc)   30731 18617
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   56242 56224
No Yes TargetDB (Targets)   4911 1902
No Yes The Salmonella enterica Pan-genome (meta-genome)   5 5
No Yes UniProt viral sequences (Viral)   2002 1819

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.