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  Home > Genomes > Xiphophorus maculatus 69_4.4.2 > LDL receptor-like module domains


LDL receptor-like module superfamily domain assignments
in
Xiphophorus maculatus 69_4.4.2

Assignment details

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Xiphophorus maculatus 69_4.4.2 has 308 significant domains in 56 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSXMAP00000000587   0.0000000746   307-344   LDL receptor-like module  
  0.000000929   265-305   LDL receptor-like module  
ENSXMAP00000000765   0.0000000000432   70-107   LDL receptor-like module  
  0.000000000115   111-148   LDL receptor-like module  
  0.000000000157   29-66   LDL receptor-like module  
ENSXMAP00000000930   0.0000000000223   175-212   LDL receptor-like module  
  0.0000000000877   2-39   LDL receptor-like module  
  0.000000000144   124-161   LDL receptor-like module  
  0.000000000196   86-121   LDL receptor-like module  
  0.00000000034   211-251   LDL receptor-like module  
  0.0000000089   256-293   LDL receptor-like module  
  0.0000000126   37-80   LDL receptor-like module  
ENSXMAP00000001440   0.000000000106   248-287   LDL receptor-like module  
  0.000000000353   126-166   LDL receptor-like module  
  0.000000000367   49-88   LDL receptor-like module  
  0.000000000471   212-249   LDL receptor-like module  
  0.00000000101   293-329   LDL receptor-like module  
  0.00000000196   87-125   LDL receptor-like module  
  0.00000000458   170-208   LDL receptor-like module  
  0.00000157   9-51   LDL receptor-like module  
ENSXMAP00000001535   0.0000000000209   403-441   LDL receptor-like module  
  0.00000445   145-183   LDL receptor-like module  
  0.0000916   312-350   LDL receptor-like module  
  0.000851   375-401   LDL receptor-like module  
ENSXMAP00000002105   0.00000000157   503-541   LDL receptor-like module  
  0.00000000301   577-616   LDL receptor-like module  
  0.00000000982   265-303   LDL receptor-like module  
  0.0000000157   306-338   LDL receptor-like module  
  0.00000668   545-575   LDL receptor-like module  
ENSXMAP00000002186   0.000000034   23-60   LDL receptor-like module  
ENSXMAP00000002337   0.000000000628   439-479   LDL receptor-like module  
  0.000000406   200-236   LDL receptor-like module  
ENSXMAP00000002346   0.0000000000445   215-253   LDL receptor-like module  
  0.00000000314   9-46   LDL receptor-like module  
  0.0000000038   132-170   LDL receptor-like module  
  0.000000017   93-130   LDL receptor-like module  
  0.0000000262   51-84   LDL receptor-like module  
  0.000000034   301-336   LDL receptor-like module  
  0.000000209   260-292   LDL receptor-like module  
  0.000000694   177-208   LDL receptor-like module  
ENSXMAP00000002816   0.00000000009   1323-1365   LDL receptor-like module  
  0.00000000497   1242-1280   LDL receptor-like module  
  0.00000011   1282-1317   LDL receptor-like module  
ENSXMAP00000002835   0.0000000000183   346-385   LDL receptor-like module  
  0.00000000196   187-224   LDL receptor-like module  
ENSXMAP00000003051   0.00000000000982   62-103   LDL receptor-like module  
  0.0000000000419   20-63   LDL receptor-like module  
  0.000000000236   106-143   LDL receptor-like module  
  0.00000000055   144-179   LDL receptor-like module  
  0.00000000055   192-229   LDL receptor-like module  
  0.0000000524   235-273   LDL receptor-like module  
  0.00000128   276-310   LDL receptor-like module  
  0.00249   2-22   LDL receptor-like module  
ENSXMAP00000003058   0.00000000183   224-260   LDL receptor-like module  
  0.000236   13-49   LDL receptor-like module  
ENSXMAP00000003420   0.0000000017   437-475   LDL receptor-like module  
  0.00000000458   511-549   LDL receptor-like module  
  0.0000000301   474-509   LDL receptor-like module  
ENSXMAP00000004026   0.00000288   75-111   LDL receptor-like module  
ENSXMAP00000004039   0.0000838   130-157   LDL receptor-like module  
ENSXMAP00000004521   0.000000000484   221-258   LDL receptor-like module  
  0.00000000471   182-218   LDL receptor-like module  
  0.00000000772   64-100   LDL receptor-like module  
  0.0000000262   24-61   LDL receptor-like module  
  0.000000128   142-180   LDL receptor-like module  
  0.00000209   109-139   LDL receptor-like module  
  0.00000288   265-296   LDL receptor-like module  
ENSXMAP00000004554   0.0000000111   295-331   LDL receptor-like module  
ENSXMAP00000004858   0.00000000000458   1098-1137   LDL receptor-like module  
  0.0000000000236   1259-1300   LDL receptor-like module  
  0.0000000000367   3627-3667   LDL receptor-like module  
  0.0000000000471   2859-2897   LDL receptor-like module  
  0.0000000000537   2736-2778   LDL receptor-like module  
  0.0000000000654   1057-1096   LDL receptor-like module  
  0.000000000109   2987-3030   LDL receptor-like module  
  0.000000000122   98-138   LDL receptor-like module  
  0.000000000126   3071-3111   LDL receptor-like module  
  0.00000000013   2700-2738   LDL receptor-like module  
  0.00000000017   2903-2941   LDL receptor-like module  
  0.00000000034   1015-1053   LDL receptor-like module  
  0.000000000576   212-252   LDL receptor-like module  
  0.000000000929   3028-3070   LDL receptor-like module  
  0.000000000956   1140-1177   LDL receptor-like module  
  0.000000000995   3511-3547   LDL receptor-like module  
  0.00000000102   18-59   LDL receptor-like module  
  0.00000000157   3798-3835   LDL receptor-like module  
  0.0000000017   3548-3589   LDL receptor-like module  
  0.00000000183   177-215   LDL receptor-like module  
  0.00000000275   3586-3631   LDL receptor-like module  
  0.00000000275   3719-3756   LDL receptor-like module  
  0.00000000419   1178-1217   LDL receptor-like module  
  0.00000000877   3928-3964   LDL receptor-like module  
  0.0000000131   3841-3877   LDL receptor-like module  
  0.0000000144   2815-2861   LDL receptor-like module  
  0.000000017   3754-3794   LDL receptor-like module  
  0.0000000314   1222-1259   LDL receptor-like module  
  0.0000000537   62-99   LDL receptor-like module  
  0.000000183   143-176   LDL receptor-like module  
  0.000000196   2945-2988   LDL receptor-like module  
  0.000000838   1304-1340   LDL receptor-like module  
  0.000000877   3682-3715   LDL receptor-like module  
  0.00000126   3884-3921   LDL receptor-like module  
  0.00000537   2781-2820   LDL receptor-like module  
ENSXMAP00000004900   0.000000000144   351-387   LDL receptor-like module  
  0.000000000694   255-296   LDL receptor-like module  
  0.000000017   216-257   LDL receptor-like module  
  0.0000000209   313-346   LDL receptor-like module  
  0.0000000393   181-218   LDL receptor-like module  
ENSXMAP00000005317   0.000000196   93-130   LDL receptor-like module  
ENSXMAP00000005333   0.000000000877   1366-1402   LDL receptor-like module  
  0.00000000131   2557-2596   LDL receptor-like module  
  0.0000000017   1449-1489   LDL receptor-like module  
  0.00000000432   2503-2540   LDL receptor-like module  
  0.0000000055   1491-1529   LDL receptor-like module  
  0.00000000798   1628-1664   LDL receptor-like module  
  0.0000000209   1571-1609   LDL receptor-like module  
  0.0000000223   1528-1564   LDL receptor-like module  
  0.0000000367   2339-2380   LDL receptor-like module  
  0.0000000942   1712-1747   LDL receptor-like module  
  0.000000314   1406-1445   LDL receptor-like module  
  0.00000314   1667-1701   LDL receptor-like module  
  0.0000602   1758-1788   LDL receptor-like module  
ENSXMAP00000005928   0.000000000000157   921-961   LDL receptor-like module  
  0.0000000000327   875-911   LDL receptor-like module  
  0.0000000000563   664-700   LDL receptor-like module  
  0.000000000117   831-867   LDL receptor-like module  
  0.000000000131   581-620   LDL receptor-like module  
  0.000000000157   702-741   LDL receptor-like module  
  0.0000000038   977-1014   LDL receptor-like module  
  0.0000000484   622-661   LDL receptor-like module  
  0.000000301   781-817   LDL receptor-like module  
  0.000000511   745-778   LDL receptor-like module  
  0.00000484   1020-1056   LDL receptor-like module  
ENSXMAP00000006331   0.0000000000196   191-230   LDL receptor-like module  
  0.0000000000327   141-181   LDL receptor-like module  
  0.000000000249   24-62   LDL receptor-like module  
  0.00000000157   61-103   LDL receptor-like module  
  0.00000000157   107-144   LDL receptor-like module  
  0.00000000236   229-270   LDL receptor-like module  
  0.0000000654   274-310   LDL receptor-like module  
ENSXMAP00000006515   0.0000000000432   155-191   LDL receptor-like module  
  0.00000000183   68-105   LDL receptor-like module  
  0.00000000288   29-65   LDL receptor-like module  
  0.0000000406   106-146   LDL receptor-like module  
ENSXMAP00000006619   0.0000000641   324-362   LDL receptor-like module  
ENSXMAP00000007159   0.00000000000929   27-65   LDL receptor-like module  
  0.0000000000236   145-185   LDL receptor-like module  
  0.0000000000314   106-146   LDL receptor-like module  
  0.0000000000694   196-233   LDL receptor-like module  
  0.00000000183   232-272   LDL receptor-like module  
  0.00000000916   65-107   LDL receptor-like module  
  0.000000511   277-311   LDL receptor-like module  
ENSXMAP00000007736   0.00000000419   364-400   LDL receptor-like module  
  0.0000000262   436-472   LDL receptor-like module  
  0.0000000327   403-437   LDL receptor-like module  
ENSXMAP00000008067   0.00000445   488-520   LDL receptor-like module  
  0.0000119   524-567   LDL receptor-like module  
  0.0000183   453-485   LDL receptor-like module  
ENSXMAP00000008460   0.00000000903   29-66   LDL receptor-like module  
ENSXMAP00000009628   0.0000000249   307-345   LDL receptor-like module  
ENSXMAP00000009771   0.000000000602   456-500   LDL receptor-like module  
  0.00000117   490-526   LDL receptor-like module  
  0.00000707   530-569   LDL receptor-like module  
ENSXMAP00000009788   0.0000000000144   210-245   LDL receptor-like module  
  0.00000000458   286-318   LDL receptor-like module  
  0.000000196   321-360   LDL receptor-like module  
  0.0000759   248-281   LDL receptor-like module  
ENSXMAP00000009812   0.0000000000301   653-695   LDL receptor-like module  
  0.0000000000615   3127-3171   LDL receptor-like module  
  0.000000000144   3324-3367   LDL receptor-like module  
  0.000000000183   612-650   LDL receptor-like module  
  0.000000000406   738-775   LDL receptor-like module  
  0.000000000406   3369-3405   LDL receptor-like module  
  0.000000000654   2453-2489   LDL receptor-like module  
  0.000000000733   778-816   LDL receptor-like module  
  0.000000000798   3290-3329   LDL receptor-like module  
  0.000000000929   3412-3456   LDL receptor-like module  
  0.000000000969   821-861   LDL receptor-like module  
  0.000000000982   693-732   LDL receptor-like module  
  0.0000000017   3206-3243   LDL receptor-like module  
  0.00000000223   2357-2398   LDL receptor-like module  
  0.00000000223   2532-2566   LDL receptor-like module  
  0.00000000353   2662-2703   LDL receptor-like module  
  0.00000000419   2492-2526   LDL receptor-like module  
  0.00000000772   2575-2610   LDL receptor-like module  
  0.00000000864   3245-3285   LDL receptor-like module  
  0.00000000995   3457-3491   LDL receptor-like module  
  0.0000000106   2318-2359   LDL receptor-like module  
  0.0000000144   3169-3207   LDL receptor-like module  
  0.0000000196   3090-3123   LDL receptor-like module  
  0.0000000524   3497-3534   LDL receptor-like module  
  0.000000072   2612-2651   LDL receptor-like module  
  0.000000157   907-945   LDL receptor-like module  
  0.000000511   870-904   LDL receptor-like module  
  0.000000511   2282-2320   LDL receptor-like module  
  0.0000038   2417-2448   LDL receptor-like module  
ENSXMAP00000010518   0.00000000262   428-464   LDL receptor-like module  
  0.00000000393   498-534   LDL receptor-like module  
  0.0000000301   463-500   LDL receptor-like module  
ENSXMAP00000010789   0.0000000367   291-327   LDL receptor-like module  
ENSXMAP00000011400   0.0000000000406   29-66   LDL receptor-like module  
  0.0000000000798   238-274   LDL receptor-like module  
  0.000000000089   64-106   LDL receptor-like module  
  0.0000000000982   272-313   LDL receptor-like module  
  0.00000000249   188-225   LDL receptor-like module  
  0.00000000563   153-188   LDL receptor-like module  
  0.0000000589   105-148   LDL receptor-like module  
ENSXMAP00000011443   0.0000000000825   851-892   LDL receptor-like module  
  0.000000000183   3612-3647   LDL receptor-like module  
  0.000000000209   3570-3609   LDL receptor-like module  
  0.000000000288   3654-3699   LDL receptor-like module  
  0.000000000367   3531-3570   LDL receptor-like module  
  0.000000000432   976-1014   LDL receptor-like module  
  0.00000000055   892-934   LDL receptor-like module  
  0.000000000563   2693-2729   LDL receptor-like module  
  0.000000000956   1017-1055   LDL receptor-like module  
  0.000000000995   2732-2765   LDL receptor-like module  
  0.00000000101   3368-3408   LDL receptor-like module  
  0.00000000106   932-970   LDL receptor-like module  
  0.00000000157   3487-3527   LDL receptor-like module  
  0.00000000249   31-70   LDL receptor-like module  
  0.00000000288   3451-3486   LDL receptor-like module  
  0.0000000038   2598-2638   LDL receptor-like module  
  0.00000000537   2772-2806   LDL receptor-like module  
  0.00000000563   2558-2599   LDL receptor-like module  
  0.00000000798   1065-1100   LDL receptor-like module  
  0.00000000825   3332-3366   LDL receptor-like module  
  0.0000000157   2854-2893   LDL receptor-like module  
  0.000000017   2817-2852   LDL receptor-like module  
  0.0000000681   3411-3449   LDL receptor-like module  
  0.000000106   3699-3732   LDL receptor-like module  
  0.00000038   1146-1184   LDL receptor-like module  
  0.000000602   2523-2560   LDL receptor-like module  
  0.00000089   3736-3776   LDL receptor-like module  
  0.00000126   1110-1143   LDL receptor-like module  
  0.00000196   2655-2688   LDL receptor-like module  
  0.00000602   79-114   LDL receptor-like module  
ENSXMAP00000011559   0.0000000000707   532-568   LDL receptor-like module  
  0.00000000017   486-523   LDL receptor-like module  
  0.000000000602   403-447   LDL receptor-like module  
  0.000000000615   651-688   LDL receptor-like module  
  0.000000000877   567-607   LDL receptor-like module  
  0.00000000105   690-733   LDL receptor-like module  
  0.00000000131   610-646   LDL receptor-like module  
  0.00000000183   445-482   LDL receptor-like module  
  0.00000000288   366-401   LDL receptor-like module  
  0.00000000393   732-776   LDL receptor-like module  
  0.0000000209   819-856   LDL receptor-like module  
  0.000000694   778-810   LDL receptor-like module  
ENSXMAP00000012026   0.0000000000275   145-182   LDL receptor-like module  
  0.00000000759   190-230   LDL receptor-like module  
  0.0000000144   345-385   LDL receptor-like module  
ENSXMAP00000012079   0.00000000903   299-335   LDL receptor-like module  
ENSXMAP00000013988   0.0000000694   11-50   LDL receptor-like module  
ENSXMAP00000014166   0.0000000000144   40-80   LDL receptor-like module  
ENSXMAP00000015906   0.000000743   91-132   LDL receptor-like module  
ENSXMAP00000016254   0.000000000301   1320-1357   LDL receptor-like module  
  0.000000000471   1242-1280   LDL receptor-like module  
  0.0000000445   1282-1318   LDL receptor-like module  
ENSXMAP00000016369   0.000000000000929   231-271   LDL receptor-like module  
  0.00000000000196   27-65   LDL receptor-like module  
  0.00000000000563   145-186   LDL receptor-like module  
  0.0000000000458   269-309   LDL receptor-like module  
  0.000000000183   189-227   LDL receptor-like module  
  0.000000000196   103-146   LDL receptor-like module  
  0.000000000406   67-105   LDL receptor-like module  
  0.0000000144   314-350   LDL receptor-like module  
ENSXMAP00000016494   0.00000000458   144-177   LDL receptor-like module  
ENSXMAP00000016539   0.00000000209   97-137   LDL receptor-like module  
ENSXMAP00000016607   0.00000000995   158-194   LDL receptor-like module  
  0.0000000209   382-425   LDL receptor-like module  
ENSXMAP00000016946   0.000000000000301   1085-1132   LDL receptor-like module  
  0.0000000000157   919-957   LDL receptor-like module  
  0.0000000000157   880-917   LDL receptor-like module  
  0.0000000000223   2804-2846   LDL receptor-like module  
  0.0000000000471   3406-3448   LDL receptor-like module  
  0.0000000000537   2845-2887   LDL receptor-like module  
  0.0000000000707   3660-3695   LDL receptor-like module  
  0.0000000000798   2722-2758   LDL receptor-like module  
  0.000000000106   3447-3487   LDL receptor-like module  
  0.000000000131   2548-2589   LDL receptor-like module  
  0.000000000183   3617-3654   LDL receptor-like module  
  0.000000000196   961-998   LDL receptor-like module  
  0.000000000458   2513-2550   LDL receptor-like module  
  0.000000000471   35-74   LDL receptor-like module  
  0.000000000471   1-37   LDL receptor-like module  
  0.000000000851   3538-3575   LDL receptor-like module  
  0.000000000969   2889-2928   LDL receptor-like module  
  0.00000000122   3573-3613   LDL receptor-like module  
  0.00000000157   2680-2715   LDL receptor-like module  
  0.00000000301   3367-3407   LDL receptor-like module  
  0.00000000524   1001-1038   LDL receptor-like module  
  0.00000000877   1044-1080   LDL receptor-like module  
  0.0000000131   3331-3366   LDL receptor-like module  
  0.000000017   3746-3783   LDL receptor-like module  
  0.0000000589   3702-3740   LDL receptor-like module  
  0.000000183   836-874   LDL receptor-like module  
  0.000000301   2635-2672   LDL receptor-like module  
  0.000000864   3501-3534   LDL receptor-like module  
  0.000000995   2760-2804   LDL receptor-like module  
  0.00000301   2597-2632   LDL receptor-like module  
ENSXMAP00000017677   0.0000000000353   437-475   LDL receptor-like module  
  0.00000000157   156-192   LDL receptor-like module  
  0.000000367   199-241   LDL receptor-like module  
  0.000000654   399-436   LDL receptor-like module  
  0.00000113   361-397   LDL receptor-like module  
ENSXMAP00000018224   0.000000335   108-149   LDL receptor-like module  
ENSXMAP00000018259   0.00000353   120-153   LDL receptor-like module  
ENSXMAP00000018575   0.0000000223   108-144   LDL receptor-like module  
ENSXMAP00000018669   0.0000000471   144-184   LDL receptor-like module  
ENSXMAP00000018818   0.00000458   171-202   LDL receptor-like module  
 
Weak hits:
ENSXMAP00000013338   0.000123   225-254   LDL receptor-like module  
ENSXMAP00000018344   0.000275   72-111   LDL receptor-like module  
  0.000275   40-70   LDL receptor-like module  

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Select to display   Genome       Domains   Proteins
No Yes ALL   327216 327216
No Yes Homo sapiens 76_38 Human 548 151
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 216 47
No Yes Gorilla gorilla 76_3.1 Western gorilla 276 65
No Yes Pongo abelii 76_2 Sumatran orangutan 204 46
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 205 51
No Yes Papio anubis 76 Olive baboon 223 47
No Yes Macaca mulatta 76_1 Rhesus monkey 283 70
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 461 115
No Yes Otolemur garnettii 76_3 Small-eared galago 203 44
No Yes Microcebus murinus 76_1 Gray mouse lemur 178 42
No Yes Rattus norvegicus 76_5.0 Norway rat 208 49
No Yes Mus musculus 76_38 House mouse 402 97
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 182 41
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 224 46
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 238 49
No Yes Cavia porcellus 76_3 Domestic guinea pig 223 51
No Yes Oryctolagus cuniculus 76_2 Rabbit 225 50
No Yes Ochotona princeps 76 American pika 188 39
No Yes Tupaia belangeri 76 Northern tree shrew 156 37
No Yes Sus scrofa 76_10.2 Pig 167 58
No Yes Bos taurus 76_3.1 Cattle 211 52
No Yes Ovis aries 76_3.1 Sheep 271 58
No Yes Vicugna pacos 76_1 Alpaca 117 23
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 196 45
No Yes Mustela putorius furo 76_1.0 Domestic ferret 233 47
No Yes Ailuropoda melanoleuca 76_1 Giant panda 261 52
No Yes Canis familiaris 76_3.1 Dog 374 66
No Yes Felis catus 76_6.2 Domestic cat 246 53
No Yes Equus caballus 76_2 Horse 321 60
No Yes Myotis lucifugus 76_2.0 Little brown bat 187 45
No Yes Pteropus vampyrus 76_1 Large flying fox 203 43
No Yes Sorex araneus 76_1 European shrew 106 25
No Yes Erinaceus europaeus 76 Western European hedgehog 139 33
No Yes Procavia capensis 76_1 Cape rock hyrax 174 36
No Yes Loxodonta africana 76_3 African savanna elephant 236 56
No Yes Echinops telfairi 76 Small Madagascar hedgehog 144 32
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 268 57
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 117 25
No Yes Macropus eugenii 76_1.0 Tammar wallaby 183 39
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 228 61
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 214 49
No Yes Ornithorhynchus anatinus 76_5 Platypus 206 53
No Yes Saccoglossus kowalevskii v3.0   1261 297
No Yes Petromyzon marinus 76_7.0 Sea lamprey 203 25
No Yes Meleagris gallopavo 76_2 Turkey 201 50
No Yes Gallus gallus 76_4 Chicken 222 45
No Yes Anas platyrhynchos 76_1.0 Mallard 185 45
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 193 44
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 218 43
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 212 59
No Yes Anolis carolinensis 76_2.0 Green anole 230 49
No Yes Xenopus laevis African clawed frog 176 45
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 231 62
No Yes Latimeria chalumnae 76_1 Coelacanth 249 52
No Yes Lepisosteus oculatus 76 Spotted gar 373 70
No Yes Gadus morhua 76_1 Atlantic cod 251 50
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 445 69
No Yes Takifugu rubripes 76_4 Torafugu 1153 201
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 365 68
No Yes Oryzias latipes 76_1 Japanese medaka 304 56
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 308 56
No Yes Poecilia formosa 76 Amazon molly 313 57
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 440 81
No Yes Astyanax mexicanus 76 Mexican tetra 293 73
No Yes Danio rerio 76_9 Zebrafish 537 103
No Yes Oikopleura dioica   54 30
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 454 80
No Yes Ciona intestinalis 76 Vase tunicate 156 67
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 601 193
No Yes Adineta vaga   274 125
No Yes Octopus bimaculoides 280   398 81
No Yes Crassostrea gigas 22 Pacific oyster 237 86
No Yes Lottia gigantea Owl limpet 212 60
No Yes Helobdella robusta   208 57
No Yes Capitella sp. I   359 115
No Yes Danaus plexippus OGS1.0 Monarch butterfly 163 38
No Yes Heliconius melpomene Postman butterfly 145 29
No Yes Bombyx mori Domestic silkworm 97 41
No Yes Nasonia vitripennis Jewel wasp 89 27
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 323 64
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 128 38
No Yes Linepithema humile v1.1 Argentine ant 122 43
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 116 43
No Yes Solenopsis invicta v.2.2.3 Red fire ant 98 38
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 126 36
No Yes Atta cephalotes v1.1   125 40
No Yes Camponotus floridanus v3.3 Florida carpenter ant 131 35
No Yes Lucilia cuprina Australian sheep blowfly 189 33
No Yes Drosophila grimshawi 1.3   174 37
No Yes Drosophila willistoni 1.3   172 39
No Yes Drosophila pseudoobscura 2.13   181 42
No Yes Drosophila persimilis 1.3   170 43
No Yes Drosophila suzukii   171 33
No Yes Drosophila yakuba 1.3   172 38
No Yes Drosophila simulans 1.3   99 33
No Yes Drosophila sechellia 1.3   155 40
No Yes Drosophila melanogaster 76_5 Fruit fly 643 97
No Yes Drosophila erecta 1.3   173 37
No Yes Drosophila ananassae 1.3   157 32
No Yes Drosophila virilis 1.2   158 36
No Yes Drosophila mojavensis 1.3   171 37
No Yes Megaselia scalaris 22   44 19
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 166 35
No Yes Culex pipiens quinquefasciatus Southern house mosquito 107 38
No Yes Anopheles darlingi 22 American malaria mosquito 118 28
No Yes Anopheles gambiae 49_3j African malaria mosquito 161 32
No Yes Tribolium castaneum 3.0 Red flour beetle 179 43
No Yes Pediculus humanus corporis (Early assembly) Human body louse 171 34
No Yes Acyrthosiphon pisum Pea aphid 150 36
No Yes Rhodnius prolixus 22   125 30
No Yes Daphnia pulex Common water flea 221 61
No Yes Strigamia maritima 22   202 47
No Yes Sarcoptes scabiei   128 42
No Yes Tetranychus urticae Two-spotted spider mite 193 71
No Yes Ixodes scapularis (Preliminary) Black-legged tick 139 44
No Yes Pristionchus pacificus   91 28
No Yes Meloidogyne incognita Southern root-knot nematode 95 18
No Yes Meloidogyne hapla   27 13
No Yes Onchocerca volvulus 22   73 17
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 129 27
No Yes Caenorhabditis japonica   103 24
No Yes Caenorhabditis brenneri   168 39
No Yes Caenorhabditis remanei   123 29
No Yes Caenorhabditis elegans 76_235 Roundworm 177 44
No Yes Caenorhabditis briggsae 2   118 26
No Yes Trichinella spiralis 22   119 32
No Yes Hymenolepis microstoma   45 11
No Yes Echinococcus multilocularis   39 13
No Yes Echinococcus granulosus   38 12
No Yes Taenia solium Pork tapeworm 35 17
No Yes Schistosoma mansoni   18 9
No Yes Mnemiopsis leidyi Sea walnut 413 204
No Yes Thelohanellus kitauei   270 126
No Yes Acropora digitifera v1.0   105 35
No Yes Nematostella vectensis 1.0 Starlet sea anemone 144 35
No Yes Hydra vulgaris   77 17
No Yes Amphimedon queenslandica   13 3
No Yes Trichoplax adhaerens   103 18
No Yes Proterospongia sp. ATCC 50818   2 2
No Yes Monosiga brevicollis   17 17
No Yes Sphaeroforma arctica JP610   1 1
No Yes Capsaspora owczarzaki ATCC 30864   2 2
No Yes Rhizopus oryzae RA 99-880   1 1
No Yes Rhizomucor miehei CAU432   1 1
No Yes Sphaerobolus stellatus v1.0   1 1
No Yes Tulasnella calospora AL13/4D v1.0   1 1
No Yes Botrytis cinerea B05.10   1 1
No Yes Sclerotinia sclerotiorum   1 1
No Yes Zasmidium cellare ATCC 36951 v1.0   1 1
No Yes Paracoccidioides brasiliensis Pb18   1 1
No Yes Histoplasma capsulatum class NAmI strain WU24   1 1
No Yes Penicillium chrysogenum Wisconsin 54-1255   1 1
No Yes Penicillium chrysogenum v1.0   1 1
No Yes Aspergillus acidus v1.0   1 1
No Yes Aspergillus brasiliensis v1.0   1 1
No Yes Aspergillus terreus NIH2624   1 1
No Yes Aspergillus tubingensis v1.0   1 1
No Yes Aspergillus niger 22   1 1
No Yes Aspergillus niger ATCC 1015   1 1
No Yes Tuber melanosporum Mel28 22   1 1
No Yes Tuber melanosporum Vittad Perigord truffle 1 1
No Yes Saccharomyces paradoxus MIT   1 1
No Yes Schizosaccharomyces japonicus yFS275   1 1
No Yes Catenaria anguillulae PL171 v1.0   1 1
No Yes Allomyces macrogynus ATCC 38327   1 1
No Yes Dictyostelium purpureum   1 1
No Yes Gossypium raimondii v221   2 2
No Yes Citrus clementina v165   2 2
No Yes Citrus sinensis v154 Sweet orange 2 2
No Yes Manihot esculenta v147 Cassava 1 1
No Yes Populus trichocarpa v156 Black cottonwood 1 1
No Yes Solanum lycopersicum v.2.3 Tomato 1 1
No Yes Solanum tuberosum Potato 3 3
No Yes Triticum aestivum 22 Bread wheat 5 5
No Yes Brachypodium distachyon Stiff brome 3 3
No Yes Panicum virgatum v202 Switchgrass 1 1
No Yes Musa balbisiana Balbis banana 1 1
No Yes Musa acuminata 22 Wild Malaysian banana 2 2
No Yes Coccomyxa subellipsoidea sp. C-169 v2   1 1
No Yes Volvox carteri f. nagariensis   1 1
No Yes Volvox carteri v199   1 1
No Yes Chlamydomonas reinhardtii 4.0   1 1
No Yes Thecamonas trahens ATCC 50062   1 1
No Yes Bigelowiella natans CCMP2755 22   2 2
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   1 1
No Yes Trypanosoma vivax   1 1
No Yes Trypanosoma congolense 2.4   1 1
No Yes Trypanosoma brucei gambiense v4.1   1 1
No Yes Trypanosoma brucei TREU927 v4.1   1 1
No Yes Pythium iwayamai DAOM BR242034 22   1 1
No Yes Pythium vexans DAOM BR484 22   1 1
No Yes Phytophthora sojae 1.1   1 1
No Yes Perkinsus marinus ATCC 50983   2 2
No Yes Naegleria gruberi   1 1
No Yes Trichomonas vaginalis   8 6
No Yes Emiliania huxleyi CCMP1516   1 1
No Yes Haliangium ochraceum DSM 14365   4 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 272 61
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 446 71
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 209 34
No Yes Ascaris suum Victoria/Ghent Pig roundworm 106 28
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 150 35
No Yes Cryptococcus neoformans var. grubii H99   1 1
No Yes Cryptococcus neoformans B-3501A   1 1
No Yes Cryptococcus neoformans JEC21   1 1
No Yes Paracoccidioides brasiliensis Pb03   1 1
No Yes Histoplasma capsulatum H88   1 1
No Yes Histoplasma capsulatum G186AR   1 1
No Yes Batrachochytrium dendrobatidis JAM81   1 1
No Yes Trypanosoma brucei Lister 427 v4.1   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 505 148
No Yes Homo sapiens (NCBI version) Human 303 75
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 220 45
No Yes Heliconius numata (Incomplete)   12 9
No Yes Loa loa v3.3 (Request) Eye worm 74 20
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 63 26
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 55 14
No Yes Moniliophthora perniciosa FA553 (Genome survey)   1 1
No Yes Picea sitchensis (Incomplete) Sitka spruce 1 1
No Yes Ricinus communis (Early assembly) Castor bean 1 1
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   3 3
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 1 1
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 1 1
No Yes Homo sapiens 69_37 Human 219 45
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 212 44
No Yes Gorilla gorilla 69_3.1 Western gorilla 191 46
No Yes Pongo abelii 69_2 Sumatran orangutan 201 44
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 188 47
No Yes Macaca mulatta 69_1 Rhesus monkey 192 45
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 216 49
No Yes Otolemur garnettii 69_3 Small-eared galago 202 43
No Yes Microcebus murinus 69_1 Gray mouse lemur 178 42
No Yes Rattus norvegicus 69_3.4 Norway rat 203 51
No Yes Mus musculus 69_38 House mouse 222 47
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 182 41
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 193 41
No Yes Cavia porcellus 69_3 Domestic guinea pig 199 49
No Yes Oryctolagus cuniculus 69_2 Rabbit 202 46
No Yes Ochotona princeps 69 American pika 188 39
No Yes Tupaia belangeri 69 Northern tree shrew 156 37
No Yes Sus scrofa 69_10.2 Pig 143 48
No Yes Bos taurus 69_3.1 Cattle 205 47
No Yes Vicugna pacos 69_1 Alpaca 117 23
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 196 45
No Yes Mustela putorius furo 69_1.0 Domestic ferret 230 46
No Yes Ailuropoda melanoleuca 69_1 Giant panda 224 48
No Yes Canis familiaris 69_3.1 Dog 243 49
No Yes Felis catus 69 Domestic cat 141 37
No Yes Equus caballus 69_2 Horse 223 52
No Yes Myotis lucifugus 69_2.0 Little brown bat 183 43
No Yes Pteropus vampyrus 69_1 Large flying fox 203 43
No Yes Sorex araneus 69_1 European shrew 106 25
No Yes Erinaceus europaeus 69 Western European hedgehog 139 33
No Yes Procavia capensis 69_1 Cape rock hyrax 174 36
No Yes Loxodonta africana 69_3 African savanna elephant 187 43
No Yes Echinops telfairi 69 Small Madagascar hedgehog 144 32
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 144 28
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 117 25
No Yes Macropus eugenii 69_1.0 Tammar wallaby 183 39
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 181 44
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 212 48
No Yes Ornithorhynchus anatinus 69_5 Platypus 175 47
No Yes Petromyzon marinus 69_7.0 Sea lamprey 168 21
No Yes Meleagris gallopavo 69_2 Turkey 169 44
No Yes Gallus gallus 69_2 Chicken 171 37
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 187 40
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 175 46
No Yes Anolis carolinensis 69_2.0 Green anole 223 47
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 220 53
No Yes Latimeria chalumnae 69_1 Coelacanth 192 43
No Yes Gadus morhua 69_1 Atlantic cod 237 47
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 307 53
No Yes Takifugu rubripes 69_4 Torafugu 272 48
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 314 55
No Yes Oryzias latipes 69_1 Japanese medaka 275 44
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 308 56
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 337 58
No Yes Danio rerio 69_9 Zebrafish 342 61
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 155 51
No Yes Ciona intestinalis 69 Vase tunicate 143 62
No Yes Drosophila melanogaster 69_5 Fruit fly 168 35
No Yes Caenorhabditis elegans 69_215 Roundworm 126 26
No Yes 1_Upper_euphotic (meta-genome)   3 2
No Yes 3_Below_base_of_euphotic (meta-genome)   1 1
No Yes 5_Below_upper_mesopelagic (meta-genome)   1 1
No Yes 6_Upper_euphotic (meta-genome)   2 1
No Yes 7_Oxygen_minimum_layer (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   1 1
No Yes NCBI 2017_08 genome   143684 28917
No Yes Protozoadb 2010_08 (Protozoadb)   18 14
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   8 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   2 2
No Yes STRING v9.0.5 (STRING)   10524 2529
No Yes Uniprot 2018_03 genome   103788 23713
No Yes Global Ocean Sampling Expedition (GOS)   193 113
No Yes PDB chains (SCOP 1.75) (PDB)   26 18
No Yes Protein Data Bank (all PDB sequenc)   207 160
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   244 244
No Yes TargetDB (Targets)   96 34

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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