SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

  Home > Genomes > Dasypus novemcinctus 76_2 > LDL receptor-like module domains


LDL receptor-like module superfamily domain assignments
in
Dasypus novemcinctus 76_2

Assignment details

(show help)


Dasypus novemcinctus 76_2 has 268 significant domains in 57 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSDNOP00000000779   0.00000017   26-63   LDL receptor-like module  
ENSDNOP00000000827   0.00000000000209   249-288   LDL receptor-like module  
  0.0000000000055   46-82   LDL receptor-like module  
  0.0000000000668   168-205   LDL receptor-like module  
  0.0000000000694   287-327   LDL receptor-like module  
  0.000000000497   85-123   LDL receptor-like module  
  0.00000000123   202-240   LDL receptor-like module  
  0.00000000798   122-164   LDL receptor-like module  
  0.0000000353   332-370   LDL receptor-like module  
ENSDNOP00000001603   0.0000000000327   633-673   LDL receptor-like module  
  0.0000000000995   591-635   LDL receptor-like module  
  0.000000000196   554-594   LDL receptor-like module  
  0.000000000327   678-716   LDL receptor-like module  
  0.000000000393   717-753   LDL receptor-like module  
  0.00000000105   765-801   LDL receptor-like module  
  0.000000144   847-883   LDL receptor-like module  
  0.000000236   811-844   LDL receptor-like module  
ENSDNOP00000001657   0.000000000838   261-298   LDL receptor-like module  
  0.00000000111   303-339   LDL receptor-like module  
  0.0000000012   346-389   LDL receptor-like module  
  0.0000000432   173-213   LDL receptor-like module  
ENSDNOP00000001929   0.00000000038   688-726   LDL receptor-like module  
ENSDNOP00000002022   0.00000000000694   1079-1115   LDL receptor-like module  
  0.0000000000458   1038-1075   LDL receptor-like module  
  0.0000000000668   1238-1278   LDL receptor-like module  
  0.0000000000838   3597-3636   LDL receptor-like module  
  0.0000000000956   3722-3762   LDL receptor-like module  
  0.000000000122   2827-2866   LDL receptor-like module  
  0.000000000144   2873-2909   LDL receptor-like module  
  0.000000000327   2996-3037   LDL receptor-like module  
  0.000000000419   3686-3725   LDL receptor-like module  
  0.000000000877   2956-2996   LDL receptor-like module  
  0.000000000903   3894-3931   LDL receptor-like module  
  0.000000000995   1120-1157   LDL receptor-like module  
  0.00000000124   2705-2745   LDL receptor-like module  
  0.00000000131   3765-3802   LDL receptor-like module  
  0.00000000144   3039-3078   LDL receptor-like module  
  0.00000000288   3476-3513   LDL receptor-like module  
  0.00000000327   995-1032   LDL receptor-like module  
  0.00000000353   3555-3597   LDL receptor-like module  
  0.00000000353   3517-3558   LDL receptor-like module  
  0.00000000759   2913-2955   LDL receptor-like module  
  0.00000000877   2668-2706   LDL receptor-like module  
  0.0000000131   76-119   LDL receptor-like module  
  0.0000000183   1158-1196   LDL receptor-like module  
  0.000000055   1202-1237   LDL receptor-like module  
  0.0000000733   3809-3847   LDL receptor-like module  
  0.000000144   118-152   LDL receptor-like module  
  0.000000249   1283-1319   LDL receptor-like module  
  0.000000419   3852-3889   LDL receptor-like module  
  0.000000759   3646-3687   LDL receptor-like module  
  0.000000877   2790-2829   LDL receptor-like module  
  0.00000236   35-71   LDL receptor-like module  
  0.00000249   2750-2788   LDL receptor-like module  
  0.0000144   2-34   LDL receptor-like module  
ENSDNOP00000003232   0.00000000733   582-619   LDL receptor-like module  
  0.00000000864   272-309   LDL receptor-like module  
  0.00000000864   345-382   LDL receptor-like module  
  0.0000000157   386-427   LDL receptor-like module  
  0.0000000183   656-696   LDL receptor-like module  
  0.0000000223   307-345   LDL receptor-like module  
  0.00000157   622-654   LDL receptor-like module  
ENSDNOP00000004087   0.00000144   92-129   LDL receptor-like module  
  0.0000236   142-171   LDL receptor-like module  
  0.000131   178-219   LDL receptor-like module  
ENSDNOP00000004331   0.0000000249   291-327   LDL receptor-like module  
ENSDNOP00000005830   0.0000311   13-45   LDL receptor-like module  
ENSDNOP00000005971   0.00000000017   347-382   LDL receptor-like module  
  0.000000000196   311-348   LDL receptor-like module  
  0.00000000055   276-311   LDL receptor-like module  
  0.00000028   387-427   LDL receptor-like module  
ENSDNOP00000006585   0.000000442   101-133   LDL receptor-like module  
ENSDNOP00000007395   0.000000000668   1330-1368   LDL receptor-like module  
  0.00000000367   1292-1328   LDL receptor-like module  
  0.00000000537   1252-1290   LDL receptor-like module  
ENSDNOP00000007996   0.0000000000903   25-67   LDL receptor-like module  
ENSDNOP00000009305   0.00000000144   1261-1300   LDL receptor-like module  
  0.00000000288   1339-1375   LDL receptor-like module  
  0.00000000367   1301-1337   LDL receptor-like module  
ENSDNOP00000009580   0.000000000393   165-207   LDL receptor-like module  
  0.000000105   130-162   LDL receptor-like module  
ENSDNOP00000010091   0.00000000000576   1312-1349   LDL receptor-like module  
  0.0000000000956   1092-1130   LDL receptor-like module  
  0.000000000144   1218-1255   LDL receptor-like module  
  0.000000000262   1053-1095   LDL receptor-like module  
  0.000000000537   1266-1299   LDL receptor-like module  
  0.000000000628   972-1009   LDL receptor-like module  
  0.00000000733   1134-1167   LDL receptor-like module  
  0.0000000144   1366-1403   LDL receptor-like module  
  0.0000000746   1408-1445   LDL receptor-like module  
  0.000000144   1012-1050   LDL receptor-like module  
  0.00000301   1171-1206   LDL receptor-like module  
ENSDNOP00000013801   0.0000000000223   29-65   LDL receptor-like module  
  0.000000000445   70-107   LDL receptor-like module  
  0.000000000524   110-147   LDL receptor-like module  
ENSDNOP00000013802   0.00000000982   256-292   LDL receptor-like module  
  0.00288   414-454   LDL receptor-like module  
ENSDNOP00000014161   0.00000000000236   118-157   LDL receptor-like module  
  0.0000000000511   45-82   LDL receptor-like module  
ENSDNOP00000014996   0.0000000123   298-334   LDL receptor-like module  
ENSDNOP00000015367   0.0000000000236   266-306   LDL receptor-like module  
  0.000000000144   230-268   LDL receptor-like module  
  0.000000000223   69-107   LDL receptor-like module  
  0.000000000236   311-347   LDL receptor-like module  
  0.000000000406   145-185   LDL receptor-like module  
  0.00000000445   106-144   LDL receptor-like module  
  0.00000000445   189-227   LDL receptor-like module  
  0.00000262   26-68   LDL receptor-like module  
ENSDNOP00000015523   0.000000000017   449-487   LDL receptor-like module  
  0.00000000196   164-200   LDL receptor-like module  
  0.000000128   410-448   LDL receptor-like module  
  0.000000196   210-253   LDL receptor-like module  
  0.000000733   373-410   LDL receptor-like module  
ENSDNOP00000015589   0.0000436   78-119   LDL receptor-like module  
ENSDNOP00000016147   0.0000000000524   848-890   LDL receptor-like module  
  0.000000000111   3496-3536   LDL receptor-like module  
  0.000000000131   3578-3618   LDL receptor-like module  
  0.00000000017   929-968   LDL receptor-like module  
  0.00000000017   3662-3707   LDL receptor-like module  
  0.000000000223   3620-3656   LDL receptor-like module  
  0.00000000038   1013-1050   LDL receptor-like module  
  0.000000000393   3378-3422   LDL receptor-like module  
  0.000000000406   889-931   LDL receptor-like module  
  0.00000000055   974-1011   LDL receptor-like module  
  0.000000000654   3542-3579   LDL receptor-like module  
  0.000000000681   2707-2744   LDL receptor-like module  
  0.00000000102   24-63   LDL receptor-like module  
  0.00000000196   1057-1097   LDL receptor-like module  
  0.00000000223   2747-2781   LDL receptor-like module  
  0.00000000458   3457-3495   LDL receptor-like module  
  0.00000000524   2829-2865   LDL receptor-like module  
  0.00000000615   2612-2653   LDL receptor-like module  
  0.00000000772   2574-2614   LDL receptor-like module  
  0.0000000106   3420-3458   LDL receptor-like module  
  0.000000012   2867-2906   LDL receptor-like module  
  0.0000000157   2787-2821   LDL receptor-like module  
  0.0000000196   3341-3376   LDL receptor-like module  
  0.0000000851   70-106   LDL receptor-like module  
  0.000000196   2538-2575   LDL receptor-like module  
  0.000000393   1143-1178   LDL receptor-like module  
  0.000000654   1106-1140   LDL receptor-like module  
  0.00000122   2673-2703   LDL receptor-like module  
  0.0000275   3704-3740   LDL receptor-like module  
  0.0105   3754-3771   LDL receptor-like module  
ENSDNOP00000018005   0.0000000471   177-211   LDL receptor-like module  
ENSDNOP00000018236   0.0000000314   78-117   LDL receptor-like module  
ENSDNOP00000019200   0.000000000838   557-596   LDL receptor-like module  
  0.00000000353   340-381   LDL receptor-like module  
  0.000000115   981-1016   LDL receptor-like module  
  0.0000017   118-155   LDL receptor-like module  
  0.055   776-808   LDL receptor-like module  
ENSDNOP00000019933   0.0000000000288   387-424   LDL receptor-like module  
  0.000000000101   128-165   LDL receptor-like module  
  0.0000249   293-342   LDL receptor-like module  
  0.00196   344-386   LDL receptor-like module  
ENSDNOP00000020341   0.000000000157   422-459   LDL receptor-like module  
  0.00000000017   262-302   LDL receptor-like module  
  0.000000000196   143-183   LDL receptor-like module  
  0.000000000249   344-379   LDL receptor-like module  
  0.000000000275   384-421   LDL receptor-like module  
  0.000000000301   465-509   LDL receptor-like module  
  0.000000000524   551-589   LDL receptor-like module  
  0.000000000903   106-141   LDL receptor-like module  
  0.00000000209   301-341   LDL receptor-like module  
  0.00000000236   227-263   LDL receptor-like module  
  0.00000000406   186-223   LDL receptor-like module  
  0.00000812   511-543   LDL receptor-like module  
ENSDNOP00000021638   0.000000000445   66-104   LDL receptor-like module  
  0.000000000838   22-60   LDL receptor-like module  
  0.0000196   107-144   LDL receptor-like module  
ENSDNOP00000021783   0.000000236   27-60   LDL receptor-like module  
ENSDNOP00000022140   0.00000000785   115-153   LDL receptor-like module  
ENSDNOP00000022558   0.0000000000288   397-434   LDL receptor-like module  
  0.000000000103   138-175   LDL receptor-like module  
  0.0000262   303-352   LDL receptor-like module  
  0.00196   354-396   LDL receptor-like module  
ENSDNOP00000023031   0.0000707   359-398   LDL receptor-like module  
  0.0327   30-53   LDL receptor-like module  
ENSDNOP00000024249   0.00000000000576   1312-1349   LDL receptor-like module  
  0.0000000000956   1092-1130   LDL receptor-like module  
  0.000000000144   1218-1255   LDL receptor-like module  
  0.000000000262   1053-1095   LDL receptor-like module  
  0.000000000537   1266-1299   LDL receptor-like module  
  0.000000000628   972-1009   LDL receptor-like module  
  0.00000000733   1134-1167   LDL receptor-like module  
  0.0000000144   1366-1403   LDL receptor-like module  
  0.0000000746   1408-1445   LDL receptor-like module  
  0.000000144   1012-1050   LDL receptor-like module  
  0.00000301   1171-1206   LDL receptor-like module  
ENSDNOP00000025103   0.0000000000458   545-581   LDL receptor-like module  
  0.00000000017   23-66   LDL receptor-like module  
  0.0000000589   585-623   LDL receptor-like module  
  0.000654   2-28   LDL receptor-like module  
  0.00825   513-542   LDL receptor-like module  
  0.0109   635-658   LDL receptor-like module  
  0.0131   427-464   LDL receptor-like module  
ENSDNOP00000025192   0.0000000000628   623-663   LDL receptor-like module  
  0.000000000118   493-529   LDL receptor-like module  
  0.000000000393   536-570   LDL receptor-like module  
  0.000000000628   413-450   LDL receptor-like module  
  0.00000000101   279-320   LDL receptor-like module  
  0.0000000034   453-495   LDL receptor-like module  
  0.0000000113   320-359   LDL receptor-like module  
  0.0000000249   244-281   LDL receptor-like module  
  0.000000034   572-613   LDL receptor-like module  
  0.000000055   374-409   LDL receptor-like module  
ENSDNOP00000025308   0.0000000000367   871-913   LDL receptor-like module  
  0.0000000000916   952-991   LDL receptor-like module  
  0.000000000144   997-1034   LDL receptor-like module  
  0.000000000209   1053-1090   LDL receptor-like module  
  0.000000000249   912-954   LDL receptor-like module  
  0.000000000576   47-86   LDL receptor-like module  
  0.00000000113   1097-1137   LDL receptor-like module  
  0.0000000471   93-129   LDL receptor-like module  
  0.000000223   1183-1218   LDL receptor-like module  
  0.000000367   1146-1180   LDL receptor-like module  
ENSDNOP00000025385   0.00000000484   327-365   LDL receptor-like module  
ENSDNOP00000025450   0.0000000759   14-48   LDL receptor-like module  
ENSDNOP00000025871   0.0000017   139-174   LDL receptor-like module  
ENSDNOP00000026283   0.000000000236   1337-1379   LDL receptor-like module  
  0.00000000055   2364-2400   LDL receptor-like module  
  0.0000000157   2140-2178   LDL receptor-like module  
  0.000000017   1488-1524   LDL receptor-like module  
  0.000000144   1378-1413   LDL receptor-like module  
  0.00000017   1418-1456   LDL receptor-like module  
  0.00000196   1527-1562   LDL receptor-like module  
  0.000196   1581-1605   LDL receptor-like module  
  0.000641   2305-2339   LDL receptor-like module  
ENSDNOP00000026319   0.00000196   185-223   LDL receptor-like module  
ENSDNOP00000027327   0.0000000353   115-154   LDL receptor-like module  
ENSDNOP00000027932   0.0000000000445   1602-1641   LDL receptor-like module  
  0.0000000000524   1727-1767   LDL receptor-like module  
  0.0000000000654   832-871   LDL receptor-like module  
  0.0000000000812   878-914   LDL receptor-like module  
  0.00000000017   1001-1042   LDL receptor-like module  
  0.000000000223   1691-1730   LDL receptor-like module  
  0.000000000458   961-1001   LDL receptor-like module  
  0.000000000484   1899-1936   LDL receptor-like module  
  0.000000000654   710-750   LDL receptor-like module  
  0.000000000707   1770-1807   LDL receptor-like module  
  0.000000000759   1044-1083   LDL receptor-like module  
  0.00000000157   1481-1518   LDL receptor-like module  
  0.0000000017   1560-1602   LDL receptor-like module  
  0.00000000196   1522-1563   LDL receptor-like module  
  0.00000000458   673-711   LDL receptor-like module  
  0.00000000484   915-960   LDL receptor-like module  
  0.000000038   1814-1852   LDL receptor-like module  
  0.000000249   1857-1894   LDL receptor-like module  
  0.000000406   1651-1692   LDL receptor-like module  
  0.000000471   795-834   LDL receptor-like module  
  0.00000122   755-793   LDL receptor-like module  
ENSDNOP00000028072   0.00000000458   37-76   LDL receptor-like module  
ENSDNOP00000029170   0.0000414   78-119   LDL receptor-like module  
ENSDNOP00000029604   0.0000000484   14-48   LDL receptor-like module  
ENSDNOP00000030106   0.0000000524   242-281   LDL receptor-like module  
  0.000000432   206-237   LDL receptor-like module  
  0.0000183   171-204   LDL receptor-like module  
ENSDNOP00000031042   0.0000000000406   472-509   LDL receptor-like module  
  0.000000000131   184-221   LDL receptor-like module  
  0.00000000223   230-269   LDL receptor-like module  
  0.00000209   433-471   LDL receptor-like module  
  0.00196   384-431   LDL receptor-like module  
ENSDNOP00000031195   0.0000000484   14-48   LDL receptor-like module  
ENSDNOP00000031868   0.0000445   68-108   LDL receptor-like module  
  0.000223   31-66   LDL receptor-like module  
ENSDNOP00000032707   0.0000000000537   292-333   LDL receptor-like module  
  0.000000000524   77-118   LDL receptor-like module  
  0.000000000589   161-197   LDL receptor-like module  
  0.00000000107   259-294   LDL receptor-like module  
  0.00000000114   42-78   LDL receptor-like module  
  0.00000000589   115-160   LDL receptor-like module  
  0.00000000772   201-236   LDL receptor-like module  
  0.000000367   337-373   LDL receptor-like module  
ENSDNOP00000032780   0.0000000000115   79-119   LDL receptor-like module  
  0.000000000113   41-81   LDL receptor-like module  
  0.000000000131   135-170   LDL receptor-like module  
  0.000000000681   170-210   LDL receptor-like module  
  0.000000000798   3-41   LDL receptor-like module  
ENSDNOP00000034284   0.0000000668   140-173   LDL receptor-like module  
ENSDNOP00000034355   0.000000000209   347-382   LDL receptor-like module  
  0.000000000236   311-348   LDL receptor-like module  
  0.000000000654   276-311   LDL receptor-like module  
  0.000000337   387-427   LDL receptor-like module  
 
Weak hits:
ENSDNOP00000025263   0.00123   43-72   LDL receptor-like module  
ENSDNOP00000029193   0.000445   212-235   LDL receptor-like module  
ENSDNOP00000030608   0.00785   28-57   LDL receptor-like module  
ENSDNOP00000033778   0.00115   35-64   LDL receptor-like module  

Jump to [ Top of page · Assignment details · Add assignments from individual genomes ]

Add assignments from groups of genomes

View all assignments containing a LDL receptor-like module domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]

Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   327216 327216
No Yes Homo sapiens 76_38 Human 548 151
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 216 47
No Yes Gorilla gorilla 76_3.1 Western gorilla 276 65
No Yes Pongo abelii 76_2 Sumatran orangutan 204 46
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 205 51
No Yes Papio anubis 76 Olive baboon 223 47
No Yes Macaca mulatta 76_1 Rhesus monkey 283 70
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 461 115
No Yes Otolemur garnettii 76_3 Small-eared galago 203 44
No Yes Microcebus murinus 76_1 Gray mouse lemur 178 42
No Yes Rattus norvegicus 76_5.0 Norway rat 208 49
No Yes Mus musculus 76_38 House mouse 402 97
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 182 41
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 224 46
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 238 49
No Yes Cavia porcellus 76_3 Domestic guinea pig 223 51
No Yes Oryctolagus cuniculus 76_2 Rabbit 225 50
No Yes Ochotona princeps 76 American pika 188 39
No Yes Tupaia belangeri 76 Northern tree shrew 156 37
No Yes Sus scrofa 76_10.2 Pig 167 58
No Yes Bos taurus 76_3.1 Cattle 211 52
No Yes Ovis aries 76_3.1 Sheep 271 58
No Yes Vicugna pacos 76_1 Alpaca 117 23
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 196 45
No Yes Mustela putorius furo 76_1.0 Domestic ferret 233 47
No Yes Ailuropoda melanoleuca 76_1 Giant panda 261 52
No Yes Canis familiaris 76_3.1 Dog 374 66
No Yes Felis catus 76_6.2 Domestic cat 246 53
No Yes Equus caballus 76_2 Horse 321 60
No Yes Myotis lucifugus 76_2.0 Little brown bat 187 45
No Yes Pteropus vampyrus 76_1 Large flying fox 203 43
No Yes Sorex araneus 76_1 European shrew 106 25
No Yes Erinaceus europaeus 76 Western European hedgehog 139 33
No Yes Procavia capensis 76_1 Cape rock hyrax 174 36
No Yes Loxodonta africana 76_3 African savanna elephant 236 56
No Yes Echinops telfairi 76 Small Madagascar hedgehog 144 32
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 268 57
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 117 25
No Yes Macropus eugenii 76_1.0 Tammar wallaby 183 39
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 228 61
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 214 49
No Yes Ornithorhynchus anatinus 76_5 Platypus 206 53
No Yes Saccoglossus kowalevskii v3.0   1261 297
No Yes Petromyzon marinus 76_7.0 Sea lamprey 203 25
No Yes Meleagris gallopavo 76_2 Turkey 201 50
No Yes Gallus gallus 76_4 Chicken 222 45
No Yes Anas platyrhynchos 76_1.0 Mallard 185 45
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 193 44
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 218 43
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 212 59
No Yes Anolis carolinensis 76_2.0 Green anole 230 49
No Yes Xenopus laevis African clawed frog 176 45
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 231 62
No Yes Latimeria chalumnae 76_1 Coelacanth 249 52
No Yes Lepisosteus oculatus 76 Spotted gar 373 70
No Yes Gadus morhua 76_1 Atlantic cod 251 50
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 445 69
No Yes Takifugu rubripes 76_4 Torafugu 1153 201
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 365 68
No Yes Oryzias latipes 76_1 Japanese medaka 304 56
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 308 56
No Yes Poecilia formosa 76 Amazon molly 313 57
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 440 81
No Yes Astyanax mexicanus 76 Mexican tetra 293 73
No Yes Danio rerio 76_9 Zebrafish 537 103
No Yes Oikopleura dioica   54 30
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 454 80
No Yes Ciona intestinalis 76 Vase tunicate 156 67
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 601 193
No Yes Adineta vaga   274 125
No Yes Octopus bimaculoides 280   398 81
No Yes Crassostrea gigas 22 Pacific oyster 237 86
No Yes Lottia gigantea Owl limpet 212 60
No Yes Helobdella robusta   208 57
No Yes Capitella sp. I   359 115
No Yes Danaus plexippus OGS1.0 Monarch butterfly 163 38
No Yes Heliconius melpomene Postman butterfly 145 29
No Yes Bombyx mori Domestic silkworm 97 41
No Yes Nasonia vitripennis Jewel wasp 89 27
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 323 64
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 128 38
No Yes Linepithema humile v1.1 Argentine ant 122 43
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 116 43
No Yes Solenopsis invicta v.2.2.3 Red fire ant 98 38
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 126 36
No Yes Atta cephalotes v1.1   125 40
No Yes Camponotus floridanus v3.3 Florida carpenter ant 131 35
No Yes Lucilia cuprina Australian sheep blowfly 189 33
No Yes Drosophila grimshawi 1.3   174 37
No Yes Drosophila willistoni 1.3   172 39
No Yes Drosophila pseudoobscura 2.13   181 42
No Yes Drosophila persimilis 1.3   170 43
No Yes Drosophila suzukii   171 33
No Yes Drosophila yakuba 1.3   172 38
No Yes Drosophila simulans 1.3   99 33
No Yes Drosophila sechellia 1.3   155 40
No Yes Drosophila melanogaster 76_5 Fruit fly 643 97
No Yes Drosophila erecta 1.3   173 37
No Yes Drosophila ananassae 1.3   157 32
No Yes Drosophila virilis 1.2   158 36
No Yes Drosophila mojavensis 1.3   171 37
No Yes Megaselia scalaris 22   44 19
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 166 35
No Yes Culex pipiens quinquefasciatus Southern house mosquito 107 38
No Yes Anopheles darlingi 22 American malaria mosquito 118 28
No Yes Anopheles gambiae 49_3j African malaria mosquito 161 32
No Yes Tribolium castaneum 3.0 Red flour beetle 179 43
No Yes Pediculus humanus corporis (Early assembly) Human body louse 171 34
No Yes Acyrthosiphon pisum Pea aphid 150 36
No Yes Rhodnius prolixus 22   125 30
No Yes Daphnia pulex Common water flea 221 61
No Yes Strigamia maritima 22   202 47
No Yes Sarcoptes scabiei   128 42
No Yes Tetranychus urticae Two-spotted spider mite 193 71
No Yes Ixodes scapularis (Preliminary) Black-legged tick 139 44
No Yes Pristionchus pacificus   91 28
No Yes Meloidogyne incognita Southern root-knot nematode 95 18
No Yes Meloidogyne hapla   27 13
No Yes Onchocerca volvulus 22   73 17
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 129 27
No Yes Caenorhabditis japonica   103 24
No Yes Caenorhabditis brenneri   168 39
No Yes Caenorhabditis remanei   123 29
No Yes Caenorhabditis elegans 76_235 Roundworm 177 44
No Yes Caenorhabditis briggsae 2   118 26
No Yes Trichinella spiralis 22   119 32
No Yes Hymenolepis microstoma   45 11
No Yes Echinococcus multilocularis   39 13
No Yes Echinococcus granulosus   38 12
No Yes Taenia solium Pork tapeworm 35 17
No Yes Schistosoma mansoni   18 9
No Yes Mnemiopsis leidyi Sea walnut 413 204
No Yes Thelohanellus kitauei   270 126
No Yes Acropora digitifera v1.0   105 35
No Yes Nematostella vectensis 1.0 Starlet sea anemone 144 35
No Yes Hydra vulgaris   77 17
No Yes Amphimedon queenslandica   13 3
No Yes Trichoplax adhaerens   103 18
No Yes Proterospongia sp. ATCC 50818   2 2
No Yes Monosiga brevicollis   17 17
No Yes Sphaeroforma arctica JP610   1 1
No Yes Capsaspora owczarzaki ATCC 30864   2 2
No Yes Rhizopus oryzae RA 99-880   1 1
No Yes Rhizomucor miehei CAU432   1 1
No Yes Sphaerobolus stellatus v1.0   1 1
No Yes Tulasnella calospora AL13/4D v1.0   1 1
No Yes Botrytis cinerea B05.10   1 1
No Yes Sclerotinia sclerotiorum   1 1
No Yes Zasmidium cellare ATCC 36951 v1.0   1 1
No Yes Paracoccidioides brasiliensis Pb18   1 1
No Yes Histoplasma capsulatum class NAmI strain WU24   1 1
No Yes Penicillium chrysogenum Wisconsin 54-1255   1 1
No Yes Penicillium chrysogenum v1.0   1 1
No Yes Aspergillus acidus v1.0   1 1
No Yes Aspergillus brasiliensis v1.0   1 1
No Yes Aspergillus terreus NIH2624   1 1
No Yes Aspergillus tubingensis v1.0   1 1
No Yes Aspergillus niger 22   1 1
No Yes Aspergillus niger ATCC 1015   1 1
No Yes Tuber melanosporum Mel28 22   1 1
No Yes Tuber melanosporum Vittad Perigord truffle 1 1
No Yes Saccharomyces paradoxus MIT   1 1
No Yes Schizosaccharomyces japonicus yFS275   1 1
No Yes Catenaria anguillulae PL171 v1.0   1 1
No Yes Allomyces macrogynus ATCC 38327   1 1
No Yes Dictyostelium purpureum   1 1
No Yes Gossypium raimondii v221   2 2
No Yes Citrus clementina v165   2 2
No Yes Citrus sinensis v154 Sweet orange 2 2
No Yes Manihot esculenta v147 Cassava 1 1
No Yes Populus trichocarpa v156 Black cottonwood 1 1
No Yes Solanum lycopersicum v.2.3 Tomato 1 1
No Yes Solanum tuberosum Potato 3 3
No Yes Triticum aestivum 22 Bread wheat 5 5
No Yes Brachypodium distachyon Stiff brome 3 3
No Yes Panicum virgatum v202 Switchgrass 1 1
No Yes Musa balbisiana Balbis banana 1 1
No Yes Musa acuminata 22 Wild Malaysian banana 2 2
No Yes Coccomyxa subellipsoidea sp. C-169 v2   1 1
No Yes Volvox carteri f. nagariensis   1 1
No Yes Volvox carteri v199   1 1
No Yes Chlamydomonas reinhardtii 4.0   1 1
No Yes Thecamonas trahens ATCC 50062   1 1
No Yes Bigelowiella natans CCMP2755 22   2 2
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   1 1
No Yes Trypanosoma vivax   1 1
No Yes Trypanosoma congolense 2.4   1 1
No Yes Trypanosoma brucei gambiense v4.1   1 1
No Yes Trypanosoma brucei TREU927 v4.1   1 1
No Yes Pythium iwayamai DAOM BR242034 22   1 1
No Yes Pythium vexans DAOM BR484 22   1 1
No Yes Phytophthora sojae 1.1   1 1
No Yes Perkinsus marinus ATCC 50983   2 2
No Yes Naegleria gruberi   1 1
No Yes Trichomonas vaginalis   8 6
No Yes Emiliania huxleyi CCMP1516   1 1
No Yes Haliangium ochraceum DSM 14365   4 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 272 61
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 446 71
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 209 34
No Yes Ascaris suum Victoria/Ghent Pig roundworm 106 28
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 150 35
No Yes Cryptococcus neoformans var. grubii H99   1 1
No Yes Cryptococcus neoformans B-3501A   1 1
No Yes Cryptococcus neoformans JEC21   1 1
No Yes Paracoccidioides brasiliensis Pb03   1 1
No Yes Histoplasma capsulatum H88   1 1
No Yes Histoplasma capsulatum G186AR   1 1
No Yes Batrachochytrium dendrobatidis JAM81   1 1
No Yes Trypanosoma brucei Lister 427 v4.1   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 505 148
No Yes Homo sapiens (NCBI version) Human 303 75
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 220 45
No Yes Heliconius numata (Incomplete)   12 9
No Yes Loa loa v3.3 (Request) Eye worm 74 20
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 63 26
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 55 14
No Yes Moniliophthora perniciosa FA553 (Genome survey)   1 1
No Yes Picea sitchensis (Incomplete) Sitka spruce 1 1
No Yes Ricinus communis (Early assembly) Castor bean 1 1
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   3 3
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 1 1
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 1 1
No Yes Homo sapiens 69_37 Human 219 45
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 212 44
No Yes Gorilla gorilla 69_3.1 Western gorilla 191 46
No Yes Pongo abelii 69_2 Sumatran orangutan 201 44
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 188 47
No Yes Macaca mulatta 69_1 Rhesus monkey 192 45
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 216 49
No Yes Otolemur garnettii 69_3 Small-eared galago 202 43
No Yes Microcebus murinus 69_1 Gray mouse lemur 178 42
No Yes Rattus norvegicus 69_3.4 Norway rat 203 51
No Yes Mus musculus 69_38 House mouse 222 47
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 182 41
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 193 41
No Yes Cavia porcellus 69_3 Domestic guinea pig 199 49
No Yes Oryctolagus cuniculus 69_2 Rabbit 202 46
No Yes Ochotona princeps 69 American pika 188 39
No Yes Tupaia belangeri 69 Northern tree shrew 156 37
No Yes Sus scrofa 69_10.2 Pig 143 48
No Yes Bos taurus 69_3.1 Cattle 205 47
No Yes Vicugna pacos 69_1 Alpaca 117 23
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 196 45
No Yes Mustela putorius furo 69_1.0 Domestic ferret 230 46
No Yes Ailuropoda melanoleuca 69_1 Giant panda 224 48
No Yes Canis familiaris 69_3.1 Dog 243 49
No Yes Felis catus 69 Domestic cat 141 37
No Yes Equus caballus 69_2 Horse 223 52
No Yes Myotis lucifugus 69_2.0 Little brown bat 183 43
No Yes Pteropus vampyrus 69_1 Large flying fox 203 43
No Yes Sorex araneus 69_1 European shrew 106 25
No Yes Erinaceus europaeus 69 Western European hedgehog 139 33
No Yes Procavia capensis 69_1 Cape rock hyrax 174 36
No Yes Loxodonta africana 69_3 African savanna elephant 187 43
No Yes Echinops telfairi 69 Small Madagascar hedgehog 144 32
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 144 28
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 117 25
No Yes Macropus eugenii 69_1.0 Tammar wallaby 183 39
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 181 44
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 212 48
No Yes Ornithorhynchus anatinus 69_5 Platypus 175 47
No Yes Petromyzon marinus 69_7.0 Sea lamprey 168 21
No Yes Meleagris gallopavo 69_2 Turkey 169 44
No Yes Gallus gallus 69_2 Chicken 171 37
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 187 40
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 175 46
No Yes Anolis carolinensis 69_2.0 Green anole 223 47
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 220 53
No Yes Latimeria chalumnae 69_1 Coelacanth 192 43
No Yes Gadus morhua 69_1 Atlantic cod 237 47
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 307 53
No Yes Takifugu rubripes 69_4 Torafugu 272 48
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 314 55
No Yes Oryzias latipes 69_1 Japanese medaka 275 44
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 308 56
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 337 58
No Yes Danio rerio 69_9 Zebrafish 342 61
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 155 51
No Yes Ciona intestinalis 69 Vase tunicate 143 62
No Yes Drosophila melanogaster 69_5 Fruit fly 168 35
No Yes Caenorhabditis elegans 69_215 Roundworm 126 26
No Yes 1_Upper_euphotic (meta-genome)   3 2
No Yes 3_Below_base_of_euphotic (meta-genome)   1 1
No Yes 5_Below_upper_mesopelagic (meta-genome)   1 1
No Yes 6_Upper_euphotic (meta-genome)   2 1
No Yes 7_Oxygen_minimum_layer (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   1 1
No Yes NCBI 2017_08 genome   143684 28917
No Yes Protozoadb 2010_08 (Protozoadb)   18 14
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   8 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   2 2
No Yes STRING v9.0.5 (STRING)   10524 2529
No Yes Uniprot 2018_03 genome   103788 23713
No Yes Global Ocean Sampling Expedition (GOS)   193 113
No Yes PDB chains (SCOP 1.75) (PDB)   26 18
No Yes Protein Data Bank (all PDB sequenc)   207 160
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   244 244
No Yes TargetDB (Targets)   96 34

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

Please send feedback, comments or questions to superfamily@cs.bris.ac.uk or use the feedback form.

© Copyright 2013 The SUPERFAMILY authors and Julian Gough.