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LDL receptor-like module superfamily domain assignments
in
Ixodes scapularis

Assignment details

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Ixodes scapularis (Preliminary) has 139 significant domains in 44 proteins.

     

Sequence ID   Evalue   Region   Family  
ISCW000437-PA   0.000000196   81-111   LDL receptor-like module  
ISCW000566-PA   0.00000000131   12-51   LDL receptor-like module  
  0.0000000275   57-95   LDL receptor-like module  
ISCW001119-PA   0.00000000236   126-162   LDL receptor-like module  
ISCW001825-PA   0.000000000157   2-37   LDL receptor-like module  
  0.00000000017   39-75   LDL receptor-like module  
ISCW006333-PA   0.0000000038   923-961   LDL receptor-like module  
  0.0000000956   960-1000   LDL receptor-like module  
  0.000000484   847-879   LDL receptor-like module  
  0.000000511   882-918   LDL receptor-like module  
  0.00000196   802-843   LDL receptor-like module  
ISCW006355-PA   0.0000471   87-117   LDL receptor-like module  
  0.0000681   121-159   LDL receptor-like module  
ISCW008354-PA   0.0000000000236   289-325   LDL receptor-like module  
  0.0000000011   328-365   LDL receptor-like module  
ISCW008401-PA   0.000000000353   658-695   LDL receptor-like module  
  0.000589   404-438   LDL receptor-like module  
ISCW008499-PA   0.00000000458   34-68   LDL receptor-like module  
ISCW008501-PA   0.000000000236   52-90   LDL receptor-like module  
  0.000000969   95-134   LDL receptor-like module  
ISCW008502-PA   0.000000000157   143-180   LDL receptor-like module  
  0.000000102   186-224   LDL receptor-like module  
ISCW008505-PA   0.0000000017   344-381   LDL receptor-like module  
  0.0000000034   446-486   LDL receptor-like module  
  0.0000115   216-249   LDL receptor-like module  
ISCW008508-PA   0.0000000089   86-122   LDL receptor-like module  
  0.000000017   299-339   LDL receptor-like module  
  0.000000196   344-374   LDL receptor-like module  
ISCW010452-PA   0.00000000131   28-66   LDL receptor-like module  
  0.0000000484   72-112   LDL receptor-like module  
ISCW011362-PA   0.00000000105   59-97   LDL receptor-like module  
ISCW011517-PA   0.00000000000851   6-45   LDL receptor-like module  
  0.0000000000576   47-83   LDL receptor-like module  
ISCW012219-PA   0.0000707   422-457   LDL receptor-like module  
ISCW012572-PA   0.00000000000131   119-159   LDL receptor-like module  
  0.0000000000072   36-78   LDL receptor-like module  
  0.000000000017   80-119   LDL receptor-like module  
  0.000000000641   165-203   LDL receptor-like module  
  0.000000000759   2-38   LDL receptor-like module  
  0.00000000183   205-249   LDL receptor-like module  
  0.00000012   246-284   LDL receptor-like module  
ISCW012702-PA   0.000000072   172-205   LDL receptor-like module  
ISCW013286-PA   0.00000000367   108-145   LDL receptor-like module  
ISCW013383-PA   0.000000000497   266-307   LDL receptor-like module  
  0.00000000301   87-123   LDL receptor-like module  
  0.00000000668   9-45   LDL receptor-like module  
  0.0000000115   47-84   LDL receptor-like module  
ISCW013412-PA   0.0000000000209   102-137   LDL receptor-like module  
  0.0000000000275   29-65   LDL receptor-like module  
  0.0000000000615   137-176   LDL receptor-like module  
  0.000000000183   64-100   LDL receptor-like module  
  0.00759   3-23   LDL receptor-like module  
ISCW013413-PA   0.000000000301   168-202   LDL receptor-like module  
  0.000000000327   88-129   LDL receptor-like module  
  0.000000000406   204-241   LDL receptor-like module  
  0.000000000615   55-91   LDL receptor-like module  
  0.000000000864   127-167   LDL receptor-like module  
  0.000000000903   19-55   LDL receptor-like module  
  0.00497   1-19   LDL receptor-like module  
ISCW013415-PA   0.00000000000576   1-37   LDL receptor-like module  
  0.00000000000772   37-72   LDL receptor-like module  
ISCW013811-PA   0.000000000127   162-199   LDL receptor-like module  
  0.00000000196   48-85   LDL receptor-like module  
  0.00000000275   123-155   LDL receptor-like module  
  0.00000000288   85-121   LDL receptor-like module  
ISCW013848-PA   0.000000301   16-50   LDL receptor-like module  
ISCW016499-PA   0.0000000000038   564-604   LDL receptor-like module  
  0.00000000000825   622-660   LDL receptor-like module  
  0.0000000000288   398-435   LDL receptor-like module  
  0.0000000000301   434-475   LDL receptor-like module  
  0.000000000432   764-802   LDL receptor-like module  
  0.000000000524   473-513   LDL receptor-like module  
  0.000000000982   676-714   LDL receptor-like module  
  0.00000000131   526-564   LDL receptor-like module  
  0.000236   730-755   LDL receptor-like module  
ISCW016885-PA   0.000000000458   51-89   LDL receptor-like module  
ISCW016918-PA   0.00000000681   18-58   LDL receptor-like module  
ISCW017311-PA   0.00000000000798   10-46   LDL receptor-like module  
  0.000000000011   88-125   LDL receptor-like module  
  0.000000000118   49-85   LDL receptor-like module  
  0.00000000101   158-197   LDL receptor-like module  
ISCW017792-PA   0.000000000055   3-39   LDL receptor-like module  
  0.000000000055   837-878   LDL receptor-like module  
  0.0000000000602   2366-2407   LDL receptor-like module  
  0.0000000000825   2240-2282   LDL receptor-like module  
  0.000000000288   956-998   LDL receptor-like module  
  0.000000000471   3273-3311   LDL receptor-like module  
  0.000000000537   2543-2583   LDL receptor-like module  
  0.000000000942   3313-3350   LDL receptor-like module  
  0.00000000102   1042-1081   LDL receptor-like module  
  0.00000000144   921-958   LDL receptor-like module  
  0.0000000017   876-915   LDL receptor-like module  
  0.00000000262   3442-3479   LDL receptor-like module  
  0.00000000353   2591-2626   LDL receptor-like module  
  0.00000000419   3103-3142   LDL receptor-like module  
  0.00000000511   3060-3101   LDL receptor-like module  
  0.00000000537   3023-3062   LDL receptor-like module  
  0.00000000903   2204-2242   LDL receptor-like module  
  0.0000000144   802-837   LDL receptor-like module  
  0.0000000157   3399-3434   LDL receptor-like module  
  0.0000000196   3231-3269   LDL receptor-like module  
  0.0000000445   2414-2448   LDL receptor-like module  
  0.0000000602   3147-3184   LDL receptor-like module  
  0.0000000681   2329-2367   LDL receptor-like module  
  0.000000105   2509-2543   LDL receptor-like module  
  0.000000406   1005-1040   LDL receptor-like module  
  0.000000432   3357-3394   LDL receptor-like module  
  0.00000103   2285-2324   LDL receptor-like module  
  0.00000118   41-77   LDL receptor-like module  
  0.00000393   3184-3225   LDL receptor-like module  
  0.00000537   1089-1124   LDL receptor-like module  
  0.00000576   2458-2499   LDL receptor-like module  
ISCW018360-PA   0.00000000327   129-167   LDL receptor-like module  
ISCW019059-PA   0.0000000157   215-249   LDL receptor-like module  
  0.0000000262   127-167   LDL receptor-like module  
  0.0000000681   172-204   LDL receptor-like module  
ISCW019419-PA   0.00000000107   223-259   LDL receptor-like module  
ISCW020565-PA   0.00000000131   30-66   LDL receptor-like module  
  0.0000000314   77-114   LDL receptor-like module  
ISCW021767-PA   0.0000000000458   87-123   LDL receptor-like module  
ISCW022284-PA   0.000000000131   80-118   LDL receptor-like module  
  0.0000000034   226-261   LDL receptor-like module  
  0.0000144   186-218   LDL receptor-like module  
  0.000236   117-141   LDL receptor-like module  
  0.000314   142-181   LDL receptor-like module  
ISCW023246-PA   0.00000000249   154-188   LDL receptor-like module  
  0.0000942   1053-1087   LDL receptor-like module  
ISCW023296-PA   0.0000000275   553-587   LDL receptor-like module  
ISCW023412-PA   0.00000157   12-52   LDL receptor-like module  
ISCW023705-PA   0.0000000000851   48-83   LDL receptor-like module  
  0.0000000628   4-46   LDL receptor-like module  
ISCW023706-PA   0.0000000000772   123-162   LDL receptor-like module  
  0.000000000106   5-43   LDL receptor-like module  
  0.000000000942   167-202   LDL receptor-like module  
  0.00000000157   88-123   LDL receptor-like module  
  0.0000000249   47-83   LDL receptor-like module  
ISCW023825-PA   0.00000000209   168-201   LDL receptor-like module  
ISCW023907-PA   0.00000000000537   318-359   LDL receptor-like module  
  0.000000000511   357-398   LDL receptor-like module  
  0.0000000105   576-611   LDL receptor-like module  
  0.0000000119   396-436   LDL receptor-like module  
  0.0000000131   440-476   LDL receptor-like module  
  0.000000131   484-523   LDL receptor-like module  
  0.000000144   526-560   LDL receptor-like module  
  0.000000183   285-319   LDL receptor-like module  
 
Weak hits:
ISCW003982-PA   0.000238   181-207   LDL receptor-like module  
ISCW005147-PA   0.0131   263-290   LDL receptor-like module  
ISCW018351-PA   0.000511   624-660   LDL receptor-like module  
ISCW018812-PA   0.00262   293-333   LDL receptor-like module  
ISCW023790-PA   0.000144   767-801   LDL receptor-like module  

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Select to display   Genome       Domains   Proteins
No Yes ALL   327216 327216
No Yes Homo sapiens 76_38 Human 548 151
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 216 47
No Yes Gorilla gorilla 76_3.1 Western gorilla 276 65
No Yes Pongo abelii 76_2 Sumatran orangutan 204 46
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 205 51
No Yes Papio anubis 76 Olive baboon 223 47
No Yes Macaca mulatta 76_1 Rhesus monkey 283 70
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 461 115
No Yes Otolemur garnettii 76_3 Small-eared galago 203 44
No Yes Microcebus murinus 76_1 Gray mouse lemur 178 42
No Yes Rattus norvegicus 76_5.0 Norway rat 208 49
No Yes Mus musculus 76_38 House mouse 402 97
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 182 41
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 224 46
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 238 49
No Yes Cavia porcellus 76_3 Domestic guinea pig 223 51
No Yes Oryctolagus cuniculus 76_2 Rabbit 225 50
No Yes Ochotona princeps 76 American pika 188 39
No Yes Tupaia belangeri 76 Northern tree shrew 156 37
No Yes Sus scrofa 76_10.2 Pig 167 58
No Yes Bos taurus 76_3.1 Cattle 211 52
No Yes Ovis aries 76_3.1 Sheep 271 58
No Yes Vicugna pacos 76_1 Alpaca 117 23
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 196 45
No Yes Mustela putorius furo 76_1.0 Domestic ferret 233 47
No Yes Ailuropoda melanoleuca 76_1 Giant panda 261 52
No Yes Canis familiaris 76_3.1 Dog 374 66
No Yes Felis catus 76_6.2 Domestic cat 246 53
No Yes Equus caballus 76_2 Horse 321 60
No Yes Myotis lucifugus 76_2.0 Little brown bat 187 45
No Yes Pteropus vampyrus 76_1 Large flying fox 203 43
No Yes Sorex araneus 76_1 European shrew 106 25
No Yes Erinaceus europaeus 76 Western European hedgehog 139 33
No Yes Procavia capensis 76_1 Cape rock hyrax 174 36
No Yes Loxodonta africana 76_3 African savanna elephant 236 56
No Yes Echinops telfairi 76 Small Madagascar hedgehog 144 32
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 268 57
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 117 25
No Yes Macropus eugenii 76_1.0 Tammar wallaby 183 39
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 228 61
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 214 49
No Yes Ornithorhynchus anatinus 76_5 Platypus 206 53
No Yes Saccoglossus kowalevskii v3.0   1261 297
No Yes Petromyzon marinus 76_7.0 Sea lamprey 203 25
No Yes Meleagris gallopavo 76_2 Turkey 201 50
No Yes Gallus gallus 76_4 Chicken 222 45
No Yes Anas platyrhynchos 76_1.0 Mallard 185 45
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 193 44
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 218 43
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 212 59
No Yes Anolis carolinensis 76_2.0 Green anole 230 49
No Yes Xenopus laevis African clawed frog 176 45
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 231 62
No Yes Latimeria chalumnae 76_1 Coelacanth 249 52
No Yes Lepisosteus oculatus 76 Spotted gar 373 70
No Yes Gadus morhua 76_1 Atlantic cod 251 50
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 445 69
No Yes Takifugu rubripes 76_4 Torafugu 1153 201
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 365 68
No Yes Oryzias latipes 76_1 Japanese medaka 304 56
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 308 56
No Yes Poecilia formosa 76 Amazon molly 313 57
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 440 81
No Yes Astyanax mexicanus 76 Mexican tetra 293 73
No Yes Danio rerio 76_9 Zebrafish 537 103
No Yes Oikopleura dioica   54 30
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 454 80
No Yes Ciona intestinalis 76 Vase tunicate 156 67
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 601 193
No Yes Adineta vaga   274 125
No Yes Octopus bimaculoides 280   398 81
No Yes Crassostrea gigas 22 Pacific oyster 237 86
No Yes Lottia gigantea Owl limpet 212 60
No Yes Helobdella robusta   208 57
No Yes Capitella sp. I   359 115
No Yes Danaus plexippus OGS1.0 Monarch butterfly 163 38
No Yes Heliconius melpomene Postman butterfly 145 29
No Yes Bombyx mori Domestic silkworm 97 41
No Yes Nasonia vitripennis Jewel wasp 89 27
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 323 64
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 128 38
No Yes Linepithema humile v1.1 Argentine ant 122 43
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 116 43
No Yes Solenopsis invicta v.2.2.3 Red fire ant 98 38
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 126 36
No Yes Atta cephalotes v1.1   125 40
No Yes Camponotus floridanus v3.3 Florida carpenter ant 131 35
No Yes Lucilia cuprina Australian sheep blowfly 189 33
No Yes Drosophila grimshawi 1.3   174 37
No Yes Drosophila willistoni 1.3   172 39
No Yes Drosophila pseudoobscura 2.13   181 42
No Yes Drosophila persimilis 1.3   170 43
No Yes Drosophila suzukii   171 33
No Yes Drosophila yakuba 1.3   172 38
No Yes Drosophila simulans 1.3   99 33
No Yes Drosophila sechellia 1.3   155 40
No Yes Drosophila melanogaster 76_5 Fruit fly 643 97
No Yes Drosophila erecta 1.3   173 37
No Yes Drosophila ananassae 1.3   157 32
No Yes Drosophila virilis 1.2   158 36
No Yes Drosophila mojavensis 1.3   171 37
No Yes Megaselia scalaris 22   44 19
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 166 35
No Yes Culex pipiens quinquefasciatus Southern house mosquito 107 38
No Yes Anopheles darlingi 22 American malaria mosquito 118 28
No Yes Anopheles gambiae 49_3j African malaria mosquito 161 32
No Yes Tribolium castaneum 3.0 Red flour beetle 179 43
No Yes Pediculus humanus corporis (Early assembly) Human body louse 171 34
No Yes Acyrthosiphon pisum Pea aphid 150 36
No Yes Rhodnius prolixus 22   125 30
No Yes Daphnia pulex Common water flea 221 61
No Yes Strigamia maritima 22   202 47
No Yes Sarcoptes scabiei   128 42
No Yes Tetranychus urticae Two-spotted spider mite 193 71
No Yes Ixodes scapularis (Preliminary) Black-legged tick 139 44
No Yes Pristionchus pacificus   91 28
No Yes Meloidogyne incognita Southern root-knot nematode 95 18
No Yes Meloidogyne hapla   27 13
No Yes Onchocerca volvulus 22   73 17
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 129 27
No Yes Caenorhabditis japonica   103 24
No Yes Caenorhabditis brenneri   168 39
No Yes Caenorhabditis remanei   123 29
No Yes Caenorhabditis elegans 76_235 Roundworm 177 44
No Yes Caenorhabditis briggsae 2   118 26
No Yes Trichinella spiralis 22   119 32
No Yes Hymenolepis microstoma   45 11
No Yes Echinococcus multilocularis   39 13
No Yes Echinococcus granulosus   38 12
No Yes Taenia solium Pork tapeworm 35 17
No Yes Schistosoma mansoni   18 9
No Yes Mnemiopsis leidyi Sea walnut 413 204
No Yes Thelohanellus kitauei   270 126
No Yes Acropora digitifera v1.0   105 35
No Yes Nematostella vectensis 1.0 Starlet sea anemone 144 35
No Yes Hydra vulgaris   77 17
No Yes Amphimedon queenslandica   13 3
No Yes Trichoplax adhaerens   103 18
No Yes Proterospongia sp. ATCC 50818   2 2
No Yes Monosiga brevicollis   17 17
No Yes Sphaeroforma arctica JP610   1 1
No Yes Capsaspora owczarzaki ATCC 30864   2 2
No Yes Rhizopus oryzae RA 99-880   1 1
No Yes Rhizomucor miehei CAU432   1 1
No Yes Sphaerobolus stellatus v1.0   1 1
No Yes Tulasnella calospora AL13/4D v1.0   1 1
No Yes Botrytis cinerea B05.10   1 1
No Yes Sclerotinia sclerotiorum   1 1
No Yes Zasmidium cellare ATCC 36951 v1.0   1 1
No Yes Paracoccidioides brasiliensis Pb18   1 1
No Yes Histoplasma capsulatum class NAmI strain WU24   1 1
No Yes Penicillium chrysogenum Wisconsin 54-1255   1 1
No Yes Penicillium chrysogenum v1.0   1 1
No Yes Aspergillus acidus v1.0   1 1
No Yes Aspergillus brasiliensis v1.0   1 1
No Yes Aspergillus terreus NIH2624   1 1
No Yes Aspergillus tubingensis v1.0   1 1
No Yes Aspergillus niger 22   1 1
No Yes Aspergillus niger ATCC 1015   1 1
No Yes Tuber melanosporum Mel28 22   1 1
No Yes Tuber melanosporum Vittad Perigord truffle 1 1
No Yes Saccharomyces paradoxus MIT   1 1
No Yes Schizosaccharomyces japonicus yFS275   1 1
No Yes Catenaria anguillulae PL171 v1.0   1 1
No Yes Allomyces macrogynus ATCC 38327   1 1
No Yes Dictyostelium purpureum   1 1
No Yes Gossypium raimondii v221   2 2
No Yes Citrus clementina v165   2 2
No Yes Citrus sinensis v154 Sweet orange 2 2
No Yes Manihot esculenta v147 Cassava 1 1
No Yes Populus trichocarpa v156 Black cottonwood 1 1
No Yes Solanum lycopersicum v.2.3 Tomato 1 1
No Yes Solanum tuberosum Potato 3 3
No Yes Triticum aestivum 22 Bread wheat 5 5
No Yes Brachypodium distachyon Stiff brome 3 3
No Yes Panicum virgatum v202 Switchgrass 1 1
No Yes Musa balbisiana Balbis banana 1 1
No Yes Musa acuminata 22 Wild Malaysian banana 2 2
No Yes Coccomyxa subellipsoidea sp. C-169 v2   1 1
No Yes Volvox carteri f. nagariensis   1 1
No Yes Volvox carteri v199   1 1
No Yes Chlamydomonas reinhardtii 4.0   1 1
No Yes Thecamonas trahens ATCC 50062   1 1
No Yes Bigelowiella natans CCMP2755 22   2 2
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   1 1
No Yes Trypanosoma vivax   1 1
No Yes Trypanosoma congolense 2.4   1 1
No Yes Trypanosoma brucei gambiense v4.1   1 1
No Yes Trypanosoma brucei TREU927 v4.1   1 1
No Yes Pythium iwayamai DAOM BR242034 22   1 1
No Yes Pythium vexans DAOM BR484 22   1 1
No Yes Phytophthora sojae 1.1   1 1
No Yes Perkinsus marinus ATCC 50983   2 2
No Yes Naegleria gruberi   1 1
No Yes Trichomonas vaginalis   8 6
No Yes Emiliania huxleyi CCMP1516   1 1
No Yes Haliangium ochraceum DSM 14365   4 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 272 61
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 446 71
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 209 34
No Yes Ascaris suum Victoria/Ghent Pig roundworm 106 28
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 150 35
No Yes Cryptococcus neoformans var. grubii H99   1 1
No Yes Cryptococcus neoformans B-3501A   1 1
No Yes Cryptococcus neoformans JEC21   1 1
No Yes Paracoccidioides brasiliensis Pb03   1 1
No Yes Histoplasma capsulatum H88   1 1
No Yes Histoplasma capsulatum G186AR   1 1
No Yes Batrachochytrium dendrobatidis JAM81   1 1
No Yes Trypanosoma brucei Lister 427 v4.1   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 505 148
No Yes Homo sapiens (NCBI version) Human 303 75
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 220 45
No Yes Heliconius numata (Incomplete)   12 9
No Yes Loa loa v3.3 (Request) Eye worm 74 20
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 63 26
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 55 14
No Yes Moniliophthora perniciosa FA553 (Genome survey)   1 1
No Yes Picea sitchensis (Incomplete) Sitka spruce 1 1
No Yes Ricinus communis (Early assembly) Castor bean 1 1
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   3 3
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 1 1
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 1 1
No Yes Homo sapiens 69_37 Human 219 45
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 212 44
No Yes Gorilla gorilla 69_3.1 Western gorilla 191 46
No Yes Pongo abelii 69_2 Sumatran orangutan 201 44
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 188 47
No Yes Macaca mulatta 69_1 Rhesus monkey 192 45
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 216 49
No Yes Otolemur garnettii 69_3 Small-eared galago 202 43
No Yes Microcebus murinus 69_1 Gray mouse lemur 178 42
No Yes Rattus norvegicus 69_3.4 Norway rat 203 51
No Yes Mus musculus 69_38 House mouse 222 47
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 182 41
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 193 41
No Yes Cavia porcellus 69_3 Domestic guinea pig 199 49
No Yes Oryctolagus cuniculus 69_2 Rabbit 202 46
No Yes Ochotona princeps 69 American pika 188 39
No Yes Tupaia belangeri 69 Northern tree shrew 156 37
No Yes Sus scrofa 69_10.2 Pig 143 48
No Yes Bos taurus 69_3.1 Cattle 205 47
No Yes Vicugna pacos 69_1 Alpaca 117 23
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 196 45
No Yes Mustela putorius furo 69_1.0 Domestic ferret 230 46
No Yes Ailuropoda melanoleuca 69_1 Giant panda 224 48
No Yes Canis familiaris 69_3.1 Dog 243 49
No Yes Felis catus 69 Domestic cat 141 37
No Yes Equus caballus 69_2 Horse 223 52
No Yes Myotis lucifugus 69_2.0 Little brown bat 183 43
No Yes Pteropus vampyrus 69_1 Large flying fox 203 43
No Yes Sorex araneus 69_1 European shrew 106 25
No Yes Erinaceus europaeus 69 Western European hedgehog 139 33
No Yes Procavia capensis 69_1 Cape rock hyrax 174 36
No Yes Loxodonta africana 69_3 African savanna elephant 187 43
No Yes Echinops telfairi 69 Small Madagascar hedgehog 144 32
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 144 28
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 117 25
No Yes Macropus eugenii 69_1.0 Tammar wallaby 183 39
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 181 44
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 212 48
No Yes Ornithorhynchus anatinus 69_5 Platypus 175 47
No Yes Petromyzon marinus 69_7.0 Sea lamprey 168 21
No Yes Meleagris gallopavo 69_2 Turkey 169 44
No Yes Gallus gallus 69_2 Chicken 171 37
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 187 40
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 175 46
No Yes Anolis carolinensis 69_2.0 Green anole 223 47
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 220 53
No Yes Latimeria chalumnae 69_1 Coelacanth 192 43
No Yes Gadus morhua 69_1 Atlantic cod 237 47
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 307 53
No Yes Takifugu rubripes 69_4 Torafugu 272 48
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 314 55
No Yes Oryzias latipes 69_1 Japanese medaka 275 44
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 308 56
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 337 58
No Yes Danio rerio 69_9 Zebrafish 342 61
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 155 51
No Yes Ciona intestinalis 69 Vase tunicate 143 62
No Yes Drosophila melanogaster 69_5 Fruit fly 168 35
No Yes Caenorhabditis elegans 69_215 Roundworm 126 26
No Yes 1_Upper_euphotic (meta-genome)   3 2
No Yes 3_Below_base_of_euphotic (meta-genome)   1 1
No Yes 5_Below_upper_mesopelagic (meta-genome)   1 1
No Yes 6_Upper_euphotic (meta-genome)   2 1
No Yes 7_Oxygen_minimum_layer (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   1 1
No Yes NCBI 2017_08 genome   143684 28917
No Yes Protozoadb 2010_08 (Protozoadb)   18 14
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   8 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   2 2
No Yes STRING v9.0.5 (STRING)   10524 2529
No Yes Uniprot 2018_03 genome   103788 23713
No Yes Global Ocean Sampling Expedition (GOS)   193 113
No Yes PDB chains (SCOP 1.75) (PDB)   26 18
No Yes Protein Data Bank (all PDB sequenc)   207 160
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   244 244
No Yes TargetDB (Targets)   96 34

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