SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.


LDL receptor-like module superfamily domain assignments
in
Oryzias latipes 76_1

Assignment details

(show help)


Oryzias latipes 76_1 has 304 significant domains in 56 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSORLP00000002045   0.0000000000641   417-455   LDL receptor-like module  
  0.00000000109   136-172   LDL receptor-like module  
  0.0000000733   379-416   LDL receptor-like module  
  0.000000262   179-221   LDL receptor-like module  
  0.00000157   341-377   LDL receptor-like module  
ENSORLP00000002895   0.0000000017   494-529   LDL receptor-like module  
  0.00000000419   423-458   LDL receptor-like module  
  0.0000000327   458-493   LDL receptor-like module  
  0.0000000351   534-573   LDL receptor-like module  
ENSORLP00000002936   0.000000223   119-157   LDL receptor-like module  
  0.000000877   86-117   LDL receptor-like module  
ENSORLP00000002937   0.000000367   268-305   LDL receptor-like module  
  0.00000111   235-266   LDL receptor-like module  
ENSORLP00000002940   0.000000812   242-279   LDL receptor-like module  
  0.00000106   209-240   LDL receptor-like module  
ENSORLP00000003701   0.0000000314   94-128   LDL receptor-like module  
ENSORLP00000004289   0.0000000484   20-56   LDL receptor-like module  
ENSORLP00000004855   0.0000000000183   191-227   LDL receptor-like module  
  0.0000000000367   103-143   LDL receptor-like module  
  0.0000000000929   142-182   LDL receptor-like module  
  0.00000000017   24-59   LDL receptor-like module  
  0.000000000942   62-105   LDL receptor-like module  
  0.00000000144   226-266   LDL receptor-like module  
  0.0000000524   275-307   LDL receptor-like module  
ENSORLP00000004856   0.0000000000183   166-202   LDL receptor-like module  
  0.0000000000589   78-118   LDL receptor-like module  
  0.0000000000942   117-157   LDL receptor-like module  
  0.000000000707   1-38   LDL receptor-like module  
  0.00000000113   37-80   LDL receptor-like module  
  0.00000000327   202-241   LDL receptor-like module  
ENSORLP00000005162   0.00000000144   2496-2535   LDL receptor-like module  
  0.00000000157   1635-1673   LDL receptor-like module  
  0.00000000262   1455-1496   LDL receptor-like module  
  0.00000000367   1374-1409   LDL receptor-like module  
  0.00000000576   2554-2592   LDL receptor-like module  
  0.0000000183   1499-1536   LDL receptor-like module  
  0.0000000471   1535-1573   LDL receptor-like module  
  0.0000000628   1722-1757   LDL receptor-like module  
  0.000000157   2343-2379   LDL receptor-like module  
  0.00000275   1413-1452   LDL receptor-like module  
  0.00000497   1676-1710   LDL receptor-like module  
  0.000471   1768-1798   LDL receptor-like module  
ENSORLP00000005246   0.00000529   87-127   LDL receptor-like module  
ENSORLP00000006788   0.000000000000903   1277-1323   LDL receptor-like module  
  0.00000000000694   2990-3033   LDL receptor-like module  
  0.0000000000262   3591-3634   LDL receptor-like module  
  0.0000000000327   1072-1109   LDL receptor-like module  
  0.000000000034   1110-1149   LDL receptor-like module  
  0.0000000000393   28-66   LDL receptor-like module  
  0.0000000000825   3633-3674   LDL receptor-like module  
  0.0000000000916   2739-2781   LDL receptor-like module  
  0.0000000000929   3031-3072   LDL receptor-like module  
  0.000000000124   1153-1190   LDL receptor-like module  
  0.00000000017   3801-3838   LDL receptor-like module  
  0.000000000196   106-145   LDL receptor-like module  
  0.000000000223   2909-2944   LDL receptor-like module  
  0.000000000275   3723-3760   LDL receptor-like module  
  0.00000000034   2704-2741   LDL receptor-like module  
  0.000000000419   2862-2900   LDL receptor-like module  
  0.000000000497   181-222   LDL receptor-like module  
  0.00000000114   224-261   LDL receptor-like module  
  0.00000000118   3758-3798   LDL receptor-like module  
  0.00000000262   3552-3592   LDL receptor-like module  
  0.00000000314   3074-3114   LDL receptor-like module  
  0.00000000393   3845-3879   LDL receptor-like module  
  0.00000000694   1236-1272   LDL receptor-like module  
  0.0000000072   1193-1231   LDL receptor-like module  
  0.00000000812   3516-3551   LDL receptor-like module  
  0.00000000969   69-104   LDL receptor-like module  
  0.0000000275   3931-3968   LDL receptor-like module  
  0.0000000759   2818-2864   LDL receptor-like module  
  0.0000000759   2783-2823   LDL receptor-like module  
  0.0000000812   3887-3925   LDL receptor-like module  
  0.000000111   149-183   LDL receptor-like module  
  0.000000144   1028-1066   LDL receptor-like module  
  0.000000183   271-307   LDL receptor-like module  
  0.000000209   1315-1353   LDL receptor-like module  
  0.000000223   2946-2990   LDL receptor-like module  
  0.00000038   3686-3719   LDL receptor-like module  
ENSORLP00000008313   0.00000000707   422-459   LDL receptor-like module  
  0.0000000102   458-495   LDL receptor-like module  
  0.0000000497   494-529   LDL receptor-like module  
ENSORLP00000008317   0.00000000851   440-477   LDL receptor-like module  
  0.0000000106   476-512   LDL receptor-like module  
  0.0000000353   513-548   LDL receptor-like module  
ENSORLP00000008321   0.000000000524   214-254   LDL receptor-like module  
  0.0000000301   254-288   LDL receptor-like module  
ENSORLP00000009045   0.0000641   12-38   LDL receptor-like module  
ENSORLP00000009056   0.0000000576   57-95   LDL receptor-like module  
ENSORLP00000009154   0.0000000000223   336-374   LDL receptor-like module  
  0.0000000131   84-124   LDL receptor-like module  
  0.0000127   245-283   LDL receptor-like module  
  0.0131   308-335   LDL receptor-like module  
ENSORLP00000009730   0.0000000471   290-326   LDL receptor-like module  
ENSORLP00000009731   0.0000000445   296-332   LDL receptor-like module  
ENSORLP00000009732   0.0000000471   291-327   LDL receptor-like module  
ENSORLP00000009754   0.0000000000589   3645-3690   LDL receptor-like module  
  0.0000000000759   3561-3601   LDL receptor-like module  
  0.0000000000785   843-884   LDL receptor-like module  
  0.000000000301   3360-3400   LDL receptor-like module  
  0.000000000327   924-965   LDL receptor-like module  
  0.000000000406   3522-3561   LDL receptor-like module  
  0.000000000497   969-1007   LDL receptor-like module  
  0.000000000537   2688-2724   LDL receptor-like module  
  0.000000000654   3603-3638   LDL receptor-like module  
  0.000000000707   884-926   LDL receptor-like module  
  0.00000000072   23-63   LDL receptor-like module  
  0.00000000113   2553-2594   LDL receptor-like module  
  0.00000000118   1009-1047   LDL receptor-like module  
  0.00000000144   3479-3519   LDL receptor-like module  
  0.00000000236   2593-2633   LDL receptor-like module  
  0.00000000275   2727-2761   LDL receptor-like module  
  0.00000000301   1052-1092   LDL receptor-like module  
  0.00000000497   3442-3477   LDL receptor-like module  
  0.00000000707   2849-2890   LDL receptor-like module  
  0.0000000157   3322-3356   LDL receptor-like module  
  0.0000000183   3402-3440   LDL receptor-like module  
  0.0000000209   2812-2847   LDL receptor-like module  
  0.0000000262   2767-2801   LDL receptor-like module  
  0.000000144   1099-1135   LDL receptor-like module  
  0.00000055   3690-3723   LDL receptor-like module  
  0.000000628   2518-2555   LDL receptor-like module  
  0.00000103   3728-3767   LDL receptor-like module  
  0.00000209   2652-2683   LDL receptor-like module  
  0.000034   71-106   LDL receptor-like module  
ENSORLP00000009955   0.000000000000249   123-161   LDL receptor-like module  
  0.0000000000406   37-74   LDL receptor-like module  
  0.00000262   75-112   LDL receptor-like module  
ENSORLP00000010553   0.00000000000419   29-67   LDL receptor-like module  
ENSORLP00000010937   0.00000000406   447-484   LDL receptor-like module  
  0.000000209   483-520   LDL receptor-like module  
ENSORLP00000012302   0.00000132   88-131   LDL receptor-like module  
ENSORLP00000012304   0.000000515   63-103   LDL receptor-like module  
ENSORLP00000012326   0.0000000117   291-328   LDL receptor-like module  
ENSORLP00000012327   0.00000000707   303-340   LDL receptor-like module  
ENSORLP00000012334   0.0000013   119-151   LDL receptor-like module  
ENSORLP00000012586   0.000000000000484   853-895   LDL receptor-like module  
  0.0000000000144   758-794   LDL receptor-like module  
  0.0000000000288   627-665   LDL receptor-like module  
  0.0000000000406   505-544   LDL receptor-like module  
  0.0000000000576   584-624   LDL receptor-like module  
  0.000000000144   913-950   LDL receptor-like module  
  0.00000000034   803-838   LDL receptor-like module  
  0.000000034   546-585   LDL receptor-like module  
  0.0000000733   674-706   LDL receptor-like module  
  0.000000432   709-745   LDL receptor-like module  
  0.0000393   959-991   LDL receptor-like module  
ENSORLP00000013029   0.00000000000707   88-126   LDL receptor-like module  
  0.000000000196   1-35   LDL receptor-like module  
  0.000000000288   125-165   LDL receptor-like module  
  0.000000000903   38-73   LDL receptor-like module  
  0.00000000733   170-207   LDL receptor-like module  
ENSORLP00000013243   0.00000000000746   87-124   LDL receptor-like module  
  0.0000000000471   122-163   LDL receptor-like module  
  0.000000000563   37-75   LDL receptor-like module  
  0.00000000089   2-37   LDL receptor-like module  
ENSORLP00000013244   0.00000000000668   87-124   LDL receptor-like module  
  0.0000000000406   122-163   LDL receptor-like module  
  0.000000000497   37-75   LDL receptor-like module  
  0.000000000785   2-37   LDL receptor-like module  
  0.00000000367   167-205   LDL receptor-like module  
ENSORLP00000013246   0.00000000000851   89-126   LDL receptor-like module  
  0.0000000000524   124-165   LDL receptor-like module  
  0.000000000615   39-77   LDL receptor-like module  
  0.000000000825   4-39   LDL receptor-like module  
  0.00000000419   169-207   LDL receptor-like module  
ENSORLP00000013262   0.00000000000275   41-78   LDL receptor-like module  
  0.0000000000072   76-118   LDL receptor-like module  
  0.00000000157   122-162   LDL receptor-like module  
ENSORLP00000013412   0.00000707   452-484   LDL receptor-like module  
  0.0000236   417-450   LDL receptor-like module  
ENSORLP00000013492   0.00000038   172-206   LDL receptor-like module  
ENSORLP00000013498   0.00000000109   21-60   LDL receptor-like module  
ENSORLP00000015147   0.0000000000144   21-57   LDL receptor-like module  
  0.000000000196   62-98   LDL receptor-like module  
ENSORLP00000017630   0.0000000126   197-233   LDL receptor-like module  
  0.00144   415-447   LDL receptor-like module  
ENSORLP00000018569   0.00000000089   83-123   LDL receptor-like module  
ENSORLP00000018612   0.00000000877   143-183   LDL receptor-like module  
ENSORLP00000018696   0.000000000000668   28-68   LDL receptor-like module  
  0.00000000000393   234-274   LDL receptor-like module  
  0.00000000000877   272-312   LDL receptor-like module  
  0.0000000000393   148-188   LDL receptor-like module  
  0.000000000223   107-149   LDL receptor-like module  
  0.000000000288   70-108   LDL receptor-like module  
  0.000000000798   192-227   LDL receptor-like module  
  0.000000017   318-353   LDL receptor-like module  
ENSORLP00000018913   0.00000000772   300-336   LDL receptor-like module  
ENSORLP00000019271   0.0000000000353   59-99   LDL receptor-like module  
  0.0000000139   7-49   LDL receptor-like module  
  0.0000000511   97-138   LDL receptor-like module  
ENSORLP00000019379   0.0000000000602   847-888   LDL receptor-like module  
  0.000000000157   3651-3695   LDL receptor-like module  
  0.00000000017   3366-3410   LDL receptor-like module  
  0.000000000288   888-930   LDL receptor-like module  
  0.000000000288   928-967   LDL receptor-like module  
  0.000000000393   3567-3606   LDL receptor-like module  
  0.000000000419   972-1010   LDL receptor-like module  
  0.000000000798   3609-3644   LDL receptor-like module  
  0.000000000982   2814-2849   LDL receptor-like module  
  0.00000000106   2730-2763   LDL receptor-like module  
  0.00000000117   3485-3524   LDL receptor-like module  
  0.0000000012   3528-3568   LDL receptor-like module  
  0.00000000144   2691-2727   LDL receptor-like module  
  0.00000000157   1012-1049   LDL receptor-like module  
  0.00000000301   2771-2805   LDL receptor-like module  
  0.00000000432   1061-1096   LDL receptor-like module  
  0.00000000471   3448-3483   LDL receptor-like module  
  0.00000000563   26-65   LDL receptor-like module  
  0.00000000602   2594-2635   LDL receptor-like module  
  0.0000000114   2901-2942   LDL receptor-like module  
  0.0000000183   3408-3446   LDL receptor-like module  
  0.0000000236   3329-3362   LDL receptor-like module  
  0.0000000249   2851-2890   LDL receptor-like module  
  0.0000000445   3696-3729   LDL receptor-like module  
  0.0000000497   2554-2595   LDL receptor-like module  
  0.0000000877   3736-3774   LDL receptor-like module  
  0.00000017   1142-1180   LDL receptor-like module  
  0.000000288   2518-2556   LDL receptor-like module  
  0.000000563   1105-1139   LDL receptor-like module  
  0.00000733   2654-2683   LDL receptor-like module  
ENSORLP00000019632   0.0000000000122   424-464   LDL receptor-like module  
  0.000000000982   265-302   LDL receptor-like module  
ENSORLP00000019917   0.000000000109   236-273   LDL receptor-like module  
  0.000000000131   117-156   LDL receptor-like module  
  0.000000000877   194-232   LDL receptor-like module  
  0.0000000101   280-322   LDL receptor-like module  
ENSORLP00000021343   0.000000000903   317-354   LDL receptor-like module  
ENSORLP00000021438   0.00000000000615   1098-1137   LDL receptor-like module  
  0.00000000000615   2731-2773   LDL receptor-like module  
  0.0000000000144   97-138   LDL receptor-like module  
  0.0000000000275   1057-1096   LDL receptor-like module  
  0.0000000000484   1258-1300   LDL receptor-like module  
  0.0000000000877   2982-3025   LDL receptor-like module  
  0.0000000000916   3624-3663   LDL receptor-like module  
  0.0000000000982   1015-1053   LDL receptor-like module  
  0.000000000107   2854-2892   LDL receptor-like module  
  0.000000000109   2695-2733   LDL receptor-like module  
  0.00000000017   177-214   LDL receptor-like module  
  0.00000000017   2898-2936   LDL receptor-like module  
  0.000000000196   21-59   LDL receptor-like module  
  0.000000000223   3582-3626   LDL receptor-like module  
  0.000000000301   212-252   LDL receptor-like module  
  0.000000000576   3023-3065   LDL receptor-like module  
  0.00000000111   3507-3543   LDL receptor-like module  
  0.00000000126   3923-3960   LDL receptor-like module  
  0.00000000157   3750-3790   LDL receptor-like module  
  0.00000000236   3790-3830   LDL receptor-like module  
  0.00000000471   1178-1217   LDL receptor-like module  
  0.00000000537   3717-3752   LDL receptor-like module  
  0.00000000563   3544-3586   LDL receptor-like module  
  0.00000000838   2810-2856   LDL receptor-like module  
  0.0000000114   1140-1177   LDL receptor-like module  
  0.0000000209   3837-3873   LDL receptor-like module  
  0.0000000432   2938-2982   LDL receptor-like module  
  0.0000000877   61-97   LDL receptor-like module  
  0.0000000982   143-176   LDL receptor-like module  
  0.000000209   1222-1259   LDL receptor-like module  
  0.000000851   3879-3915   LDL receptor-like module  
  0.00000157   1304-1340   LDL receptor-like module  
  0.0000038   3678-3711   LDL receptor-like module  
  0.00000668   2772-2814   LDL receptor-like module  
ENSORLP00000022137   0.0000000759   303-339   LDL receptor-like module  
ENSORLP00000022869   0.0000000000119   817-860   LDL receptor-like module  
  0.00000000012   859-900   LDL receptor-like module  
  0.000000000249   3394-3430   LDL receptor-like module  
  0.000000000353   2674-2709   LDL receptor-like module  
  0.000000000694   2805-2846   LDL receptor-like module  
  0.000000000785   780-820   LDL receptor-like module  
  0.000000000785   941-977   LDL receptor-like module  
  0.00000000101   3512-3550   LDL receptor-like module  
  0.00000000115   903-940   LDL receptor-like module  
  0.00000000122   3350-3386   LDL receptor-like module  
  0.00000000183   3267-3307   LDL receptor-like module  
  0.00000000196   988-1025   LDL receptor-like module  
  0.00000000209   3472-3508   LDL receptor-like module  
  0.0000000055   3309-3346   LDL receptor-like module  
  0.00000000563   2595-2631   LDL receptor-like module  
  0.00000000576   3429-3469   LDL receptor-like module  
  0.0000000107   2500-2540   LDL receptor-like module  
  0.0000000109   3230-3264   LDL receptor-like module  
  0.0000000127   2717-2751   LDL receptor-like module  
  0.0000000144   3552-3588   LDL receptor-like module  
  0.0000000196   2754-2794   LDL receptor-like module  
  0.0000000393   2634-2669   LDL receptor-like module  
  0.0000000668   3593-3627   LDL receptor-like module  
  0.000000223   2425-2462   LDL receptor-like module  
  0.000000236   1036-1068   LDL receptor-like module  
  0.000000327   2460-2501   LDL receptor-like module  
  0.000000484   2556-2590   LDL receptor-like module  
  0.00000301   6-39   LDL receptor-like module  
  0.00000327   3640-3672   LDL receptor-like module  
  0.0000038   1072-1106   LDL receptor-like module  
ENSORLP00000022917   0.000000000209   484-520   LDL receptor-like module  
  0.000000000563   412-448   LDL receptor-like module  
  0.00000000209   446-482   LDL receptor-like module  
  0.000000407   525-564   LDL receptor-like module  
ENSORLP00000023196   0.000000000196   1332-1369   LDL receptor-like module  
  0.000000000929   1254-1293   LDL receptor-like module  
  0.00000000445   1294-1330   LDL receptor-like module  
ENSORLP00000023715   0.00000000144   181-218   LDL receptor-like module  
  0.00000000314   453-487   LDL receptor-like module  
  0.00000000681   145-181   LDL receptor-like module  
  0.00000000838   255-290   LDL receptor-like module  
  0.000000017   221-255   LDL receptor-like module  
  0.0000262   497-530   LDL receptor-like module  
  0.0000262   536-568   LDL receptor-like module  
 
Weak hits:
ENSORLP00000006799   0.000376   68-107   LDL receptor-like module  
  0.00072   36-66   LDL receptor-like module  
ENSORLP00000019323   0.000103   58-87   LDL receptor-like module  

Jump to [ Top of page · Assignment details · Add assignments from individual genomes ]


Add assignments from groups of genomes

View all assignments containing a LDL receptor-like module domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]


Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   327216 327216
No Yes Homo sapiens 76_38 Human 548 151
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 216 47
No Yes Gorilla gorilla 76_3.1 Western gorilla 276 65
No Yes Pongo abelii 76_2 Sumatran orangutan 204 46
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 205 51
No Yes Papio anubis 76 Olive baboon 223 47
No Yes Macaca mulatta 76_1 Rhesus monkey 283 70
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 461 115
No Yes Otolemur garnettii 76_3 Small-eared galago 203 44
No Yes Microcebus murinus 76_1 Gray mouse lemur 178 42
No Yes Rattus norvegicus 76_5.0 Norway rat 208 49
No Yes Mus musculus 76_38 House mouse 402 97
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 182 41
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 224 46
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 238 49
No Yes Cavia porcellus 76_3 Domestic guinea pig 223 51
No Yes Oryctolagus cuniculus 76_2 Rabbit 225 50
No Yes Ochotona princeps 76 American pika 188 39
No Yes Tupaia belangeri 76 Northern tree shrew 156 37
No Yes Sus scrofa 76_10.2 Pig 167 58
No Yes Bos taurus 76_3.1 Cattle 211 52
No Yes Ovis aries 76_3.1 Sheep 271 58
No Yes Vicugna pacos 76_1 Alpaca 117 23
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 196 45
No Yes Mustela putorius furo 76_1.0 Domestic ferret 233 47
No Yes Ailuropoda melanoleuca 76_1 Giant panda 261 52
No Yes Canis familiaris 76_3.1 Dog 374 66
No Yes Felis catus 76_6.2 Domestic cat 246 53
No Yes Equus caballus 76_2 Horse 321 60
No Yes Myotis lucifugus 76_2.0 Little brown bat 187 45
No Yes Pteropus vampyrus 76_1 Large flying fox 203 43
No Yes Sorex araneus 76_1 European shrew 106 25
No Yes Erinaceus europaeus 76 Western European hedgehog 139 33
No Yes Procavia capensis 76_1 Cape rock hyrax 174 36
No Yes Loxodonta africana 76_3 African savanna elephant 236 56
No Yes Echinops telfairi 76 Small Madagascar hedgehog 144 32
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 268 57
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 117 25
No Yes Macropus eugenii 76_1.0 Tammar wallaby 183 39
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 228 61
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 214 49
No Yes Ornithorhynchus anatinus 76_5 Platypus 206 53
No Yes Saccoglossus kowalevskii v3.0   1261 297
No Yes Petromyzon marinus 76_7.0 Sea lamprey 203 25
No Yes Meleagris gallopavo 76_2 Turkey 201 50
No Yes Gallus gallus 76_4 Chicken 222 45
No Yes Anas platyrhynchos 76_1.0 Mallard 185 45
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 193 44
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 218 43
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 212 59
No Yes Anolis carolinensis 76_2.0 Green anole 230 49
No Yes Xenopus laevis African clawed frog 176 45
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 231 62
No Yes Latimeria chalumnae 76_1 Coelacanth 249 52
No Yes Lepisosteus oculatus 76 Spotted gar 373 70
No Yes Gadus morhua 76_1 Atlantic cod 251 50
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 445 69
No Yes Takifugu rubripes 76_4 Torafugu 1153 201
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 365 68
No Yes Oryzias latipes 76_1 Japanese medaka 304 56
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 308 56
No Yes Poecilia formosa 76 Amazon molly 313 57
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 440 81
No Yes Astyanax mexicanus 76 Mexican tetra 293 73
No Yes Danio rerio 76_9 Zebrafish 537 103
No Yes Oikopleura dioica   54 30
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 454 80
No Yes Ciona intestinalis 76 Vase tunicate 156 67
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 601 193
No Yes Adineta vaga   274 125
No Yes Octopus bimaculoides 280   398 81
No Yes Crassostrea gigas 22 Pacific oyster 237 86
No Yes Lottia gigantea Owl limpet 212 60
No Yes Helobdella robusta   208 57
No Yes Capitella sp. I   359 115
No Yes Danaus plexippus OGS1.0 Monarch butterfly 163 38
No Yes Heliconius melpomene Postman butterfly 145 29
No Yes Bombyx mori Domestic silkworm 97 41
No Yes Nasonia vitripennis Jewel wasp 89 27
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 323 64
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 128 38
No Yes Linepithema humile v1.1 Argentine ant 122 43
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 116 43
No Yes Solenopsis invicta v.2.2.3 Red fire ant 98 38
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 126 36
No Yes Atta cephalotes v1.1   125 40
No Yes Camponotus floridanus v3.3 Florida carpenter ant 131 35
No Yes Lucilia cuprina Australian sheep blowfly 189 33
No Yes Drosophila grimshawi 1.3   174 37
No Yes Drosophila willistoni 1.3   172 39
No Yes Drosophila pseudoobscura 2.13   181 42
No Yes Drosophila persimilis 1.3   170 43
No Yes Drosophila suzukii   171 33
No Yes Drosophila yakuba 1.3   172 38
No Yes Drosophila simulans 1.3   99 33
No Yes Drosophila sechellia 1.3   155 40
No Yes Drosophila melanogaster 76_5 Fruit fly 643 97
No Yes Drosophila erecta 1.3   173 37
No Yes Drosophila ananassae 1.3   157 32
No Yes Drosophila virilis 1.2   158 36
No Yes Drosophila mojavensis 1.3   171 37
No Yes Megaselia scalaris 22   44 19
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 166 35
No Yes Culex pipiens quinquefasciatus Southern house mosquito 107 38
No Yes Anopheles darlingi 22 American malaria mosquito 118 28
No Yes Anopheles gambiae 49_3j African malaria mosquito 161 32
No Yes Tribolium castaneum 3.0 Red flour beetle 179 43
No Yes Pediculus humanus corporis (Early assembly) Human body louse 171 34
No Yes Acyrthosiphon pisum Pea aphid 150 36
No Yes Rhodnius prolixus 22   125 30
No Yes Daphnia pulex Common water flea 221 61
No Yes Strigamia maritima 22   202 47
No Yes Sarcoptes scabiei   128 42
No Yes Tetranychus urticae Two-spotted spider mite 193 71
No Yes Ixodes scapularis (Preliminary) Black-legged tick 139 44
No Yes Pristionchus pacificus   91 28
No Yes Meloidogyne incognita Southern root-knot nematode 95 18
No Yes Meloidogyne hapla   27 13
No Yes Onchocerca volvulus 22   73 17
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 129 27
No Yes Caenorhabditis japonica   103 24
No Yes Caenorhabditis brenneri   168 39
No Yes Caenorhabditis remanei   123 29
No Yes Caenorhabditis elegans 76_235 Roundworm 177 44
No Yes Caenorhabditis briggsae 2   118 26
No Yes Trichinella spiralis 22   119 32
No Yes Hymenolepis microstoma   45 11
No Yes Echinococcus multilocularis   39 13
No Yes Echinococcus granulosus   38 12
No Yes Taenia solium Pork tapeworm 35 17
No Yes Schistosoma mansoni   18 9
No Yes Mnemiopsis leidyi Sea walnut 413 204
No Yes Thelohanellus kitauei   270 126
No Yes Acropora digitifera v1.0   105 35
No Yes Nematostella vectensis 1.0 Starlet sea anemone 144 35
No Yes Hydra vulgaris   77 17
No Yes Amphimedon queenslandica   13 3
No Yes Trichoplax adhaerens   103 18
No Yes Proterospongia sp. ATCC 50818   2 2
No Yes Monosiga brevicollis   17 17
No Yes Sphaeroforma arctica JP610   1 1
No Yes Capsaspora owczarzaki ATCC 30864   2 2
No Yes Rhizopus oryzae RA 99-880   1 1
No Yes Rhizomucor miehei CAU432   1 1
No Yes Sphaerobolus stellatus v1.0   1 1
No Yes Tulasnella calospora AL13/4D v1.0   1 1
No Yes Botrytis cinerea B05.10   1 1
No Yes Sclerotinia sclerotiorum   1 1
No Yes Zasmidium cellare ATCC 36951 v1.0   1 1
No Yes Paracoccidioides brasiliensis Pb18   1 1
No Yes Histoplasma capsulatum class NAmI strain WU24   1 1
No Yes Penicillium chrysogenum Wisconsin 54-1255   1 1
No Yes Penicillium chrysogenum v1.0   1 1
No Yes Aspergillus acidus v1.0   1 1
No Yes Aspergillus brasiliensis v1.0   1 1
No Yes Aspergillus terreus NIH2624   1 1
No Yes Aspergillus tubingensis v1.0   1 1
No Yes Aspergillus niger 22   1 1
No Yes Aspergillus niger ATCC 1015   1 1
No Yes Tuber melanosporum Mel28 22   1 1
No Yes Tuber melanosporum Vittad Perigord truffle 1 1
No Yes Saccharomyces paradoxus MIT   1 1
No Yes Schizosaccharomyces japonicus yFS275   1 1
No Yes Catenaria anguillulae PL171 v1.0   1 1
No Yes Allomyces macrogynus ATCC 38327   1 1
No Yes Dictyostelium purpureum   1 1
No Yes Gossypium raimondii v221   2 2
No Yes Citrus clementina v165   2 2
No Yes Citrus sinensis v154 Sweet orange 2 2
No Yes Manihot esculenta v147 Cassava 1 1
No Yes Populus trichocarpa v156 Black cottonwood 1 1
No Yes Solanum lycopersicum v.2.3 Tomato 1 1
No Yes Solanum tuberosum Potato 3 3
No Yes Triticum aestivum 22 Bread wheat 5 5
No Yes Brachypodium distachyon Stiff brome 3 3
No Yes Panicum virgatum v202 Switchgrass 1 1
No Yes Musa balbisiana Balbis banana 1 1
No Yes Musa acuminata 22 Wild Malaysian banana 2 2
No Yes Coccomyxa subellipsoidea sp. C-169 v2   1 1
No Yes Volvox carteri f. nagariensis   1 1
No Yes Volvox carteri v199   1 1
No Yes Chlamydomonas reinhardtii 4.0   1 1
No Yes Thecamonas trahens ATCC 50062   1 1
No Yes Bigelowiella natans CCMP2755 22   2 2
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   1 1
No Yes Trypanosoma vivax   1 1
No Yes Trypanosoma congolense 2.4   1 1
No Yes Trypanosoma brucei gambiense v4.1   1 1
No Yes Trypanosoma brucei TREU927 v4.1   1 1
No Yes Pythium iwayamai DAOM BR242034 22   1 1
No Yes Pythium vexans DAOM BR484 22   1 1
No Yes Phytophthora sojae 1.1   1 1
No Yes Perkinsus marinus ATCC 50983   2 2
No Yes Naegleria gruberi   1 1
No Yes Trichomonas vaginalis   8 6
No Yes Emiliania huxleyi CCMP1516   1 1
No Yes Haliangium ochraceum DSM 14365   4 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 272 61
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 446 71
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 209 34
No Yes Ascaris suum Victoria/Ghent Pig roundworm 106 28
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 150 35
No Yes Cryptococcus neoformans var. grubii H99   1 1
No Yes Cryptococcus neoformans B-3501A   1 1
No Yes Cryptococcus neoformans JEC21   1 1
No Yes Paracoccidioides brasiliensis Pb03   1 1
No Yes Histoplasma capsulatum H88   1 1
No Yes Histoplasma capsulatum G186AR   1 1
No Yes Batrachochytrium dendrobatidis JAM81   1 1
No Yes Trypanosoma brucei Lister 427 v4.1   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 505 148
No Yes Homo sapiens (NCBI version) Human 303 75
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 220 45
No Yes Heliconius numata (Incomplete)   12 9
No Yes Loa loa v3.3 (Request) Eye worm 74 20
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 63 26
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 55 14
No Yes Moniliophthora perniciosa FA553 (Genome survey)   1 1
No Yes Picea sitchensis (Incomplete) Sitka spruce 1 1
No Yes Ricinus communis (Early assembly) Castor bean 1 1
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   3 3
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 1 1
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 1 1
No Yes Homo sapiens 69_37 Human 219 45
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 212 44
No Yes Gorilla gorilla 69_3.1 Western gorilla 191 46
No Yes Pongo abelii 69_2 Sumatran orangutan 201 44
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 188 47
No Yes Macaca mulatta 69_1 Rhesus monkey 192 45
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 216 49
No Yes Otolemur garnettii 69_3 Small-eared galago 202 43
No Yes Microcebus murinus 69_1 Gray mouse lemur 178 42
No Yes Rattus norvegicus 69_3.4 Norway rat 203 51
No Yes Mus musculus 69_38 House mouse 222 47
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 182 41
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 193 41
No Yes Cavia porcellus 69_3 Domestic guinea pig 199 49
No Yes Oryctolagus cuniculus 69_2 Rabbit 202 46
No Yes Ochotona princeps 69 American pika 188 39
No Yes Tupaia belangeri 69 Northern tree shrew 156 37
No Yes Sus scrofa 69_10.2 Pig 143 48
No Yes Bos taurus 69_3.1 Cattle 205 47
No Yes Vicugna pacos 69_1 Alpaca 117 23
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 196 45
No Yes Mustela putorius furo 69_1.0 Domestic ferret 230 46
No Yes Ailuropoda melanoleuca 69_1 Giant panda 224 48
No Yes Canis familiaris 69_3.1 Dog 243 49
No Yes Felis catus 69 Domestic cat 141 37
No Yes Equus caballus 69_2 Horse 223 52
No Yes Myotis lucifugus 69_2.0 Little brown bat 183 43
No Yes Pteropus vampyrus 69_1 Large flying fox 203 43
No Yes Sorex araneus 69_1 European shrew 106 25
No Yes Erinaceus europaeus 69 Western European hedgehog 139 33
No Yes Procavia capensis 69_1 Cape rock hyrax 174 36
No Yes Loxodonta africana 69_3 African savanna elephant 187 43
No Yes Echinops telfairi 69 Small Madagascar hedgehog 144 32
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 144 28
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 117 25
No Yes Macropus eugenii 69_1.0 Tammar wallaby 183 39
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 181 44
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 212 48
No Yes Ornithorhynchus anatinus 69_5 Platypus 175 47
No Yes Petromyzon marinus 69_7.0 Sea lamprey 168 21
No Yes Meleagris gallopavo 69_2 Turkey 169 44
No Yes Gallus gallus 69_2 Chicken 171 37
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 187 40
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 175 46
No Yes Anolis carolinensis 69_2.0 Green anole 223 47
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 220 53
No Yes Latimeria chalumnae 69_1 Coelacanth 192 43
No Yes Gadus morhua 69_1 Atlantic cod 237 47
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 307 53
No Yes Takifugu rubripes 69_4 Torafugu 272 48
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 314 55
No Yes Oryzias latipes 69_1 Japanese medaka 275 44
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 308 56
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 337 58
No Yes Danio rerio 69_9 Zebrafish 342 61
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 155 51
No Yes Ciona intestinalis 69 Vase tunicate 143 62
No Yes Drosophila melanogaster 69_5 Fruit fly 168 35
No Yes Caenorhabditis elegans 69_215 Roundworm 126 26
No Yes 1_Upper_euphotic (meta-genome)   3 2
No Yes 3_Below_base_of_euphotic (meta-genome)   1 1
No Yes 5_Below_upper_mesopelagic (meta-genome)   1 1
No Yes 6_Upper_euphotic (meta-genome)   2 1
No Yes 7_Oxygen_minimum_layer (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   1 1
No Yes NCBI 2017_08 genome   143684 28917
No Yes Protozoadb 2010_08 (Protozoadb)   18 14
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   8 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   2 2
No Yes STRING v9.0.5 (STRING)   10524 2529
No Yes Uniprot 2018_03 genome   103788 23713
No Yes Global Ocean Sampling Expedition (GOS)   193 113
No Yes PDB chains (SCOP 1.75) (PDB)   26 18
No Yes Protein Data Bank (all PDB sequenc)   207 160
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   244 244
No Yes TargetDB (Targets)   96 34

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]